SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene674

Length: 3492 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene674
GTCATCTATCTATACCTATTATGAAGTCTGATTGAGAATTTTCGGCGGAGAATTTACTGGGAAAGGAAGAAGAGGAAAGGAGAGATGGCGACTCTGGGAGATATTGCAGTGGCGGGAGTCATAAATCTTTTGATCGCCCTTGGGTTTCTGTTGGCATTTACGTTTCTGAGGTTGCAGCCCATGAACGATAGAGTTTACTTTCCCAAATGGTATCTTAAGGGGTCAAGAAAAAGCCCCCGGCACTCCAGATCAGCTATAGGTAGATTCGTAAATTTGGATTACAAAACGTACCTGCGATTCCTGAATTGGATGCCGGAGGCTCTCAAAATGCCGGAGTCGGAGCTCATTGATCACGCAGGCTTTGATACTGTTGTTTACCTTCGGATCTACATTGTGGGTCTGAAAATCTTTGTACCTTTGGCAGTTCTTGCTTGTGCAATCCTTGTTCCAGTAAATGCCACAGGAGGGACTTTAGTAAACTTAAAGAAAGAGTTGGTCTTTAGTGACATTGACAAACTTTCAATATCAAATGTCCAGAGTGGTTCTCAAAGGTTTTGGGCTCATCTATTAATGGCGTATGTGTTTTCAGCATGGACATGTTTTGTGCTTTACGTAGAGTATGACAAAATAGCAAGCATGAGGCTGCATTTCTTGGCTTCACAACGTCGTCGTCCCGATCAATTCAGTGTCCTAGTCAGAAATGTGCCTCCAGATACCGATGAGACAATTAGTGAGCATGTTGATCACTTTTTTCGAGTTAACCATCCTGATCACTACCTCACTCATCAGGTTGTCTACAATGCAAATAAGCTTGCTAAGCTTGTTAAGAAGAAGGAGAAACTCAAAAACTGGCTTGATTACTACCAGATCAAGTATTCAAGACATCCTGAAAAGAGGCCCACAACAAAGGAAGGTTTTCTCGGTCTTTGGGGTGAAAGAGTGGATGCCATTGACTTTTACACAGCAGAAATTGACACTTTGGTTACGGAAATAGCAGAAGAACGAGAACGGGTACTGAAAGATCCTGAGGCAATCATGCCTGTTGCATTTGTTTCATTTAATACACGCTGGGGAGCTGCTGTTTGTGCACAAACACAACAAAGCAAGAACCCAACAATTTGGTTAACAGAGTGGGCCCCTGAGCCTCGTGATGTATACTGGAGCAATCTGGCCATTCCATTTGTTGCAATCGCAATTCGGAAACTAGTCATGGGTGTTACACTCTTTTTCCTTGTATTTTTCTTCATGATCCCAATTGCAGCAGTCCAGTCATTGGCCAACCTTGATGGAATTGAGAAGGTTGCTCCCTTCCTGAAACCAATAATAGAAGTGAAAATTATCAAGTCATTTCTTCAAGGATTTCTACCAGGGTTGGCTTTGAAGATATTTCTTATTTTACTTCCTACTATCTTGATGGTCATGTCAAAAATTGAAGGTTATGCAGCAACATCTATACTTGAAAGGAGAGCTGCTGCAAAGTATTATTACTTTATGCTGGTGAATGTATTTCTTGGAAGTATAATTACTGGAACAGCATTTCAACAGCTTCATGCTTTTCTTCATCAATCTCCAACAGAGATACCAAAGACTATTGGAGTTTCAATACCAATGAAAGCTACCTTTTTCATCACTTATATCATGGTTGATGGATGGGCTGGCATTGCTGGTGAAATTCTCCGATTGAAGCCGTTAATCATTTTTCATCTGAAGAACATGTTTTTGGTGAAGACTGAGAAGGATAGGGAGAATGCCATGGATCCTGGCAGTGTCGGTTTCCCAGAAGCACTTCCTCAACTTCAACTATACTTTCTTCTTGGACTTGTGTATGCAGTGGTCACGCCAATACTTCTGCCTTTCATAGTCATCTTTTTTGGATTTGCATACTTTGTGTATCGACATCAGGTTATCAATGTGTATAATCAGGAGTATGAGAGTGTAGCAGCATTTTGGCCTCATGTTCATAGTCGTATAGTTGCTGCATTAGTAATATCACAGCTACTACTACTTGGTCTGCTAAGCACTAAAAAAGCAGCTAACTCCACGCCTATACTTTTAGCCCTTCCAGTGTTGACAATTTGGTTTCACAAGTTTTGTAAAAGTCGTTTTGAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCATCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGATTATGCTTTCGTATTTAATCCTTCAGAGAAGGAGCTTAGAAATTCCCTGGATCATTGAAAGGAGAAATTGCTGGGATTGTTGAGTCTGTAGGAGCTGAGAGGGAATCTAACACAGCCTTGTCATTGCAATTGCTGGTGTACTGTACAAACTACTTATTATGATACAGGATCTTTTTTGAACATGTTTAAGCAGACATGGGCACTGTAAGATAAATTTGTATGTATGAACTTGAAGAGCAAAAGTAATCACATCTATTGATTGGAATATAGGTGAGTTGTGTTGCTCTTCTGGGCGTTGTTTTCTTTGATTTGCTTGAACTGTTCGAACTGCAGGACAGGTTAATTACATATAACAGAAAAGCTGTTTAATTGTCAGCTCCACAGCAGTCATGTTGAATACAACTTCCATAGTCAAAAATAACAAAGAAGGAAAAGAAGTCAACAATTGAACTCTAAAACACTGCTTGGAATCGTCGTCTAATCTTCACTGTGGGAACATCTGTGACAACTGGAAGAAGTAACACTGTTGTCTGGGCAGGGATCCACCATAAAACCCAAAAATACGGAGGTTCCAGTAATTATGGTTATCCAGATGAGGGCTATTTTGACAGAGTGAAGAAAGAACTAGCACTCGTTAATGTTATTTAAAGCGAGAGATTAATTGTTTCCAATGTGCAGCGTTCTGGAGAGGCATTAATATTTCAGGCTCCAGGCTTCCCTATGCAAAATTTTTGGGATAAAGCTGGTTAAAGTTATTGCTTAAACTTTAATTATGAAGCTAATATTCAGTGTAGGAGCTAATATTCATATTAACTCATTTTCCTTTGGCTTAAGTGTCACTGAACCATCGATATGTTCAGTCGGTATCATGACAAGGAATATGCAAACATGGGTTGCTCTATTTAAGAATTGCATTGTAATACACATTAAATACCGTAGCAGTGGTTCCCTTTCAATGCAATTCAAATTACTATTACCATAGAAGTATATAGAAATAATAATACAATTTCTTGAAAGGTTGTTGAGTAGAGAAGAAGATAATTATTGCTGTATGATGTGAATATGAAATCACTGCAGTGAAGTAAATTGAATAAATTAAAG

Ace file of the UniGene sp_v2.0_unigene674

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF221 domain containing protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	WWE domain	IPR004170	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg: your sequence is longer than subject: 769 - 717

Fln protein: MATLGDIAVAGVINLLIALGFLLAFTFLRLQPMNDRVYFPKWYLKGSRKSPRHSRSAIGRFVNLDYKTYLRFLNWMPEALKMPESELIDHAGFDTVVYLRIYIVGLKIFVPLAVLACAILVPVNATGGTLVNLKKELVFSDIDKLSISNVQSGSQRFWAHLLMAYVFSAWTCFVLYVEYDKIASMRLHFLASQRRRPDQFSVLVRNVPPDTDETISEHVDHFFRVNHPDHYLTHQVVYNANKLAKLVKKKEKLKNWLDYYQIKYSRHPEKRPTTKEGFLGLWGERVDAIDFYTAEIDTLVTEIAEERERVLKDPEAIMPVAFVSFNTRWGAAVCAQTQQSKNPTIWLTEWAPEPRDVYWSNLAIPFVAIAIRKLVMGVTLFFLVFFFMIPIAAVQSLANLDGIEKVAPFLKPIIEVKIIKSFLQGFLPGLALKIFLILLPTILMVMSKIEGYAATSILERRAAAKYYYFMLVNVFLGSIITGTAFQQLHAFLHQSPTEIPKTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLKNMFLVKTEKDRENAMDPGSVGFPEALPQLQLYFLLGLVYAVVTPILLPFIVIFFGFAYFVYRHQVINVYNQEYESVAAFWPHVHSRIVAALVISQLLLLGLLSTKKAANSTPILLALPVLTIWFHKFCKSRFEPAFRRYPLEEAMAKDTLERATEPNLNLKGYLTNSYLHPIFKSEENEENEMGEWRDDDSLVLTKRHSKLNTPGASENSYIASPEYDEETYNYQV*

Protein Length: 770

Fln nts: GTCATCTATCTATACCTATTATGAAGTCTGATTGAGAATTTTCGGCGGAGAATTTACTGGGAAAGGAAGAAGAGGAAAGGAGAG_-_ATGGCGACTCTGGGAGATATTGCAGTGGCGGGAGTCATAAATCTTTTGATCGCCCTTGGGTTTCTGTTGGCATTTACGTTTCTGAGGTTGCAGCCCATGAACGATAGAGTTTACTTTCCCAAATGGTATCTTAAGGGGTCAAGAAAAAGCCCCCGGCACTCCAGATCAGCTATAGGTAGATTCGTAAATTTGGATTACAAAACGTACCTGCGATTCCTGAATTGGATGCCGGAGGCTCTCAAAATGCCGGAGTCGGAGCTCATTGATCACGCAGGCTTTGATACTGTTGTTTACCTTCGGATCTACATTGTGGGTCTGAAAATCTTTGTACCTTTGGCAGTTCTTGCTTGTGCAATCCTTGTTCCAGTAAATGCCACAGGAGGGACTTTAGTAAACTTAAAGAAAGAGTTGGTCTTTAGTGACATTGACAAACTTTCAATATCAAATGTCCAGAGTGGTTCTCAAAGGTTTTGGGCTCATCTATTAATGGCGTATGTGTTTTCAGCATGGACATGTTTTGTGCTTTACGTAGAGTATGACAAAATAGCAAGCATGAGGCTGCATTTCTTGGCTTCACAACGTCGTCGTCCCGATCAATTCAGTGTCCTAGTCAGAAATGTGCCTCCAGATACCGATGAGACAATTAGTGAGCATGTTGATCACTTTTTTCGAGTTAACCATCCTGATCACTACCTCACTCATCAGGTTGTCTACAATGCAAATAAGCTTGCTAAGCTTGTTAAGAAGAAGGAGAAACTCAAAAACTGGCTTGATTACTACCAGATCAAGTATTCAAGACATCCTGAAAAGAGGCCCACAACAAAGGAAGGTTTTCTCGGTCTTTGGGGTGAAAGAGTGGATGCCATTGACTTTTACACAGCAGAAATTGACACTTTGGTTACGGAAATAGCAGAAGAACGAGAACGGGTACTGAAAGATCCTGAGGCAATCATGCCTGTTGCATTTGTTTCATTTAATACACGCTGGGGAGCTGCTGTTTGTGCACAAACACAACAAAGCAAGAACCCAACAATTTGGTTAACAGAGTGGGCCCCTGAGCCTCGTGATGTATACTGGAGCAATCTGGCCATTCCATTTGTTGCAATCGCAATTCGGAAACTAGTCATGGGTGTTACACTCTTTTTCCTTGTATTTTTCTTCATGATCCCAATTGCAGCAGTCCAGTCATTGGCCAACCTTGATGGAATTGAGAAGGTTGCTCCCTTCCTGAAACCAATAATAGAAGTGAAAATTATCAAGTCATTTCTTCAAGGATTTCTACCAGGGTTGGCTTTGAAGATATTTCTTATTTTACTTCCTACTATCTTGATGGTCATGTCAAAAATTGAAGGTTATGCAGCAACATCTATACTTGAAAGGAGAGCTGCTGCAAAGTATTATTACTTTATGCTGGTGAATGTATTTCTTGGAAGTATAATTACTGGAACAGCATTTCAACAGCTTCATGCTTTTCTTCATCAATCTCCAACAGAGATACCAAAGACTATTGGAGTTTCAATACCAATGAAAGCTACCTTTTTCATCACTTATATCATGGTTGATGGATGGGCTGGCATTGCTGGTGAAATTCTCCGATTGAAGCCGTTAATCATTTTTCATCTGAAGAACATGTTTTTGGTGAAGACTGAGAAGGATAGGGAGAATGCCATGGATCCTGGCAGTGTCGGTTTCCCAGAAGCACTTCCTCAACTTCAACTATACTTTCTTCTTGGACTTGTGTATGCAGTGGTCACGCCAATACTTCTGCCTTTCATAGTCATCTTTTTTGGATTTGCATACTTTGTGTATCGACATCAGGTTATCAATGTGTATAATCAGGAGTATGAGAGTGTAGCAGCATTTTGGCCTCATGTTCATAGTCGTATAGTTGCTGCATTAGTAATATCACAGCTACTACTACTTGGTCTGCTAAGCACTAAAAAAGCAGCTAACTCCACGCCTATACTTTTAGCCCTTCCAGTGTTGACAATTTGGTTTCACAAGTTTTGTAAAAGTCGTTTTGAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCATCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGA___TTATGCTTTCGTATTTAATCCTTCAGAGAAGGAGCTTAGAAATTCCCTGGATCATTGAAAGGAGAAATTGCTGGGATTGTTGAGTCTGTAGGAGCTGAGAGGGAATCTAACACAGCCTTGTCATTGCAATTGCTGGTGTACTGTACAAACTACTTATTATGATACAGGATCTTTTTTGAACATGTTTAAGCAGACATGGGCACTGTAAGATAAATTTGTATGTATGAACTTGAAGAGCAAAAGTAATCACATCTATTGATTGGAATATAGGTGAGTTGTGTTGCTCTTCTGGGCGTTGTTTTCTTTGATTTGCTTGAACTGTTCGAACTGCAGGACAGGTTAATTACATATAACAGAAAAGCTGTTTAATTGTCAGCTCCACAGCAGTCATGTTGAATACAACTTCCATAGTCAAAAATAACAAAGAAGGAAAAGAAGTCAACAATTGAACTCTAAAACACTGCTTGGAATCGTCGTCTAATCTTCACTGTGGGAACATCTGTGACAACTGGAAGAAGTAACACTGTTGTCTGGGCAGGGATCCACCATAAAACCCAAAAATACGGAGGTTCCAGTAATTATGGTTATCCAGATGAGGGCTATTTTGACAGAGTGAAGAAAGAACTAGCACTCGTTAATGTTATTTAAAGCGAGAGATTAATTGTTTCCAATGTGCAGCGTTCTGGAGAGGCATTAATATTTCAGGCTCCAGGCTTCCCTATGCAAAATTTTTGGGATAAAGCTGGTTAAAGTTATTGCTTAAACTTTAATTATGAAGCTAATATTCAGTGTAGGAGCTAATATTCATATTAACTCATTTTCCTTTGGCTTAAGTGTCACTGAACCATCGATATGTTCAGTCGGTATCATGACAAGGAATATGCAAACATGGGTTGCTCTATTTAAGAATTGCATTGTAATACACATTAAATACCGTAGCAGTGGTTCCCTTTCAATGCAATTCAAATTACTATTACCATAGAAGTATATAGAAATAATAATACAATTTCTTGAAAGGTTGTTGAGTAGAGAAGAAGATAATTATTGCTGTATGATGTGAATATGAAATCACTGCAGTGAAGTAAATTGAATAAATTAAAG

Fln Alignment:

Contig674___INLLIALGFLLAFTFLRLQPMNDRVYFPKWYLKGSRKSPRHSRSAIGRFVNLDYKTYLRFLNWMPEALKMPESELIDHAGFDTVVYLRIYIVGLKIFVPLAVLACAILVPVNATGGTLVNLK-KELVFSDIDKLSISNVQSGSQRFWAHLLMAYVFSAWTCFVLYVEYDKIASMRLHFLASQRRRPDQFSVLVRNVPPDTDETISEHVDHFFRVNHPDHYLTHQVVYXXXXXXXXXXXXXXXXXWLDYYQIKYSRHPEKRPTTKEGFLGLWGERVDAIDFYTAEIDTLVTEIAEERERVLKDPEAIMPVAFVSFNTRWGAAVCAQTQQSKNPTIWLTEWAPEPRDVYWSNLAIPFVAIAIRKLVMGVTLFFLVFFFMIPIAAVQSLANLDGIEKVAPFLKPIIEVKIIKSFLQGFLPGLALKIFLILLPTILMVMSKIEGYAATSILERRAAAKYYYFMLVNVFLGSIITGTAFQQLHAFLHQSPTEIPKTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLKNMFLVKTEKDRENAMDPGSVGFPEAXXXXXXXXXXXXVYAVVTPILLPFIVIFFGFAYFVYRHQVINVYNQEYESVAAFWPHVHSRIVAALVISQXXXXXXXSTKKAANSTPILLALPVLTIWFHKFCKSRFEPAFRRYPLEEAMAKD-TLERATEPNLNLKGYLTNSYLHP
B8LKM0_____________INTGLCVLLLSFYSVLRKQPDNVYVYAPRRVAEEQAK--REGPFSLERLVPSP--------GWIVRAWRLSEDEFLSAAGFDAFVFLRIFIFSIRIFSIAGIIGVFVLLPLNYTGNQLRTVDWADIPNQSLDLFTIANVQDGSKRLWVHFCAVYLISGAACCLLYLEYKGIAEKRFSYFNSSPPQPNHFTILVRGIPKSDQHSMSETVEEFFTLYHPSTYFSHQMVYHSNRVQSLMHEAEKLYKRILHLKTKPRL---QRKSHREGFLGLFGAKVDPVDLYTKKLEDVEENVKLEQSTFYQN-EKELPAAFVSFRSRYGAAMASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTFVQGLTQLTELESFLPFLKKVLKLTIVSDIITGYLPSLILQMFQYFVPPIMLLFSAMRGHISNSGKMKSACIMVLSFTIWNVFFATVLSGSVISQINTFL-SDPKDIPRQLAVVVPGQATFFITYVLTSGWTGLSLEIARIFPLI----GNFFIRHFSNITEDADCAPSFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQMLKVYSPRFESAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKVPFASGWVIPMTVITLLFNDYCRKRFLPIFNRYPAEILIKRDGEDERNPQMMASFLDSLVNAYRDP

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
794	20			80	0.995493
795	20	80			0.995493
797	80		20		0.995493
798		80		20	0.995493
921		88		11	0.923564
1224		88		11	0.923564
1238	11			88	0.923564
2492	6		93		0.999364
2661	14		85		0.993533
2662			85	14	0.993533
3044	85			14	0.994477
3046		85	14		0.994477
3088	87		12		0.993502
3090		12		87	0.993502
3091	87		12		0.993502
3092	87			12	0.993502
3093			12	87	0.993502
3095		12		87	0.993502
3096		12		87	0.993502
3098		87		12	0.993502
3105		85	14		0.999986
3106	85			14	0.999986
3108	14		78	7	0.999983
3109		85		14	0.999986
3112		85	14		0.999986
3113		85	14		0.999986
3116	85		14		0.999986
3121	84	15			0.999991
3263		84		15	0.999986
3280	84			15	0.999986
3283		83		16	0.999991
3366	15	84			0.999986
3409	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain