SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene633

Length: 1527 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene633

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	inositol phosphate kinase [Glycine max]	-	-	65%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 1; Zea mays (Maize).	-	-	63%
Blast2go	inositol phosphate kinase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-tetrakisphosphate 1-kinase.	EC:2.7.1.134	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Inositol phosphate metabolism	00562		0.0	78%
Blast2go	Inositol-1,3,4-trisphosphate 5/6-kinase.	EC:2.7.1.159	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Phosphatidylinositol signaling system	04070	78%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	78%
Blast2go	inositol trisphosphate metabolic process	GO:0032957	Biological Process	78%
Blast2go	inositol tetrakisphosphate 1-kinase activity	GO:0047325	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	78%
Blast2go	inositol-1,3,4-trisphosphate 5/6-kinase activity	GO:0035300	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q84Y01

Fln msg: STOP codon was not found. Distance to subject end: 27 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MSNEKRYGIGYALAPKKKQSFIQISLVELARKRGIDLICIDYNKPLIDQGPFDCILHKLTGEEWKKQLQEYTLKHPHVCIIDRPEAIERLHNRISMLQVVSELRVIQKNETFGIPKQIVVYLAEDLSCSETPVELKFPVIAKPLVADGSMKSHKMSLVFNSEGLLKLKPPLVLQEFVNHGGVIFKVYVVGDYVKCVKRKSLPDVAEEMLKTAEGSMSFCQISNVTQDHENENYYGIMNLEDAEMPPATFVSDIAKGLRQALGLNLFNFDVIRDTKAGNHYLVIDINYFPGYAKMPAYESVLTDFFCKIFDEKKSLEGGAVTDAKLDEKINATRKQDGVYEGIAECCNVDEKIEAT

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTTTGCATATTCCTTCTTTGATTTCCAAACCTTTGAAATTAAGTGCCTGTATTATTTATATCGTCGTGACCTTGGCTGTCACTCAGGTGTGTTGTAATGAGCATCGAACCCTAGGGAGCTTCGGCGCCAAATTTTCTGAGAGTTGTCCCAACCTCGGAACGAACGATTAGTCTTCTAAAAGTTGGGAGGCTTCTAGCCAAAAACCAAAGAAGCTGATGCGATGAAAGATTGCTGGCATTGCCAGTATTTGAACGCCCACCGTCGGGATCGATAGTGTATCCCTGGTAAGCTGCGGAGCTTAATTTTCATTTTCTTGTAAAGTCGTATTTTAGAATTGGGTGTCGAGGTTTTGAAATGTTCGTTGAATTTTCGAGCGACCCACTTCTCGCAGCACATTTTCTGATACGAAATTCTGTGTGAAAAGAACCAAAA_-_ATGTCGAACGAGAAACGTTATGGAATTGGGTATGCCCTGGCACCCAAGAAGAAACAGAGCTTTATCCAGATTTCATTAGTTGAGCTTGCCAGGAAACGGGGTATAGACCTAATTTGTATTGATTACAATAAACCTTTGATAGATCAGGGCCCCTTTGATTGTATTCTGCACAAACTAACCGGGGAGGAGTGGAAAAAACAGTTGCAGGAATACACATTAAAACACCCACACGTCTGCATTATTGATAGGCCAGAGGCCATTGAGAGGCTACACAATCGAATTTCGATGCTGCAGGTGGTGTCCGAATTGAGGGTTATACAGAAGAATGAGACATTTGGGATACCTAAACAAATTGTTGTGTATTTGGCCGAAGACCTGTCTTGTTCGGAGACCCCGGTGGAGTTGAAATTCCCAGTGATTGCGAAGCCGCTCGTTGCTGATGGGAGCATGAAGTCACACAAGATGTCTCTCGTGTTCAATTCTGAAGGGCTGCTGAAGCTGAAGCCTCCGCTGGTGTTGCAGGAGTTTGTTAATCATGGCGGGGTGATATTCAAAGTGTATGTTGTGGGGGATTATGTTAAGTGTGTGAAGAGGAAGTCCCTGCCTGATGTGGCTGAGGAGATGCTTAAGACCGCAGAGGGCTCTATGTCGTTCTGCCAGATTTCGAATGTTACCCAGGATCATGAGAATGAGAATTACTATGGGATTATGAATCTGGAGGATGCCGAAATGCCGCCGGCAACGTTTGTTTCTGATATTGCTAAGGGCCTGCGGCAGGCCTTGGGGTTGAATTTATTCAATTTTGATGTTATCAGAGATACCAAGGCTGGGAATCATTATCTGGTTATAGATATCAATTACTTTCCTGGCTATGCTAAGATGCCAGCTTATGAATCGGTGCTGACTGATTTTTTCTGTAAGATTTTTGATGAGAAGAAGTCATTGGAGGGTGGTGCAGTTACTGATGCTAAGTTGGATGAGAAGATTAATGCTACCAGAAAGCAAGATGGTGTTTATGAGGGTATCGCTGAGTGCTGTAATGTGGATGAGAAGATTGAAGCTACCAG

Fln Alignment:

Contig633___MSNEKRYGIGYALAPKKKQSFIQISLVELARKRGIDLICIDYNKPLIDQGPFDCILHKLTGEEWKKQLQEYTLKHPHVCIIDRPEAIERLHNRISMLQVVSEL-RVIQKNETFGIPKQIVVYLAEDLSCSETPVELKFPVIAKPLVADGSMKSHKMSLVFNSEGLLKLKPPLVLQEFVNHGGVIFKVYVVGDYVKCVKRKSLPDVAEEMLKTAEGSMSFCQISNVTQDHENENYYGIMNLEDAEMPPATFVSDIAKGLRQALGLNLFNFDVIRDTKAGNHYLVIDINYFPGYAKMPAYESVLTDFF
Q84Y01_____________VTHPPRYVIGYALAPKKQQSFIQPSLVAQAASRGMDLVPVDASQPLAEQGPFHLLIHKLYGDDWRAQLVAFAARHPAVPIVDPPHAIDRLHNRISMLQVVSELDHAADQDSTFGIPSQVVVYDAAALADFGLLAALRFPLIAKPLVADGTAKSHKMSLVYHREGLGKLRPPLVLQEFVNHGGVIFKVYVVGGHVTCVKRRSLPDVSPEDDASAQGSVSFSQVSNLPTERTAEEYYGEKSLEDAVVPPAAFINQIAGGLRRALGLQLFNFDMIRDVRAGDRYLVIDINYFPGYAKMPGYETVLTDFF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
667		20		80	0.995493
694	16	83			0.994512
842		14		85	0.993533
861	14		85		0.993533
925	87		12		0.992554
947	16	83			0.994512
950	83		16		0.994512
1175		11		88	0.923564
1191		87		12	0.992554
1208		88		11	0.923564
1227	12			87	0.992554
1274	16			83	0.994512
1275		16		83	0.994512
1278		83		16	0.994512
1379	25			50	0.995533
1380	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain