SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene617

Length: 1471 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene617 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	0.0001	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	photomorphogenesis repressor protein	-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	86%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	86%
Blast2go	response to red light	GO:0010114	Biological Process	86%
Blast2go	response to far red light	GO:0010218	Biological Process	86%
Blast2go	short-day photoperiodism, flowering	GO:0048575	Biological Process	86%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	86%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	86%
Blast2go	identical protein binding	GO:0042802	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	86%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%
Blast2go	regulation of photoperiodism, flowering	GO:2000028	Biological Process	86%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	KDPG/KHG aldolase	IPR000887	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ7

Fln msg: Separated hits, possible frame ERROR between 88 and 91, your sequence is shorter than subject: 177 - 347

Fln protein: CCVQFPPDSANMITFGSADYKIYCYDLRxxKIPWCTLAGHGKAVSYVKFIDSSTIVSASTDNTLKLWDLTKANPSGVSNNACTLTYTGHTNEKNFVGLSVVDGYIACGSETNSVFAYYKSLPMPMGSHRFGFADPISSQEMEDDSGQFVSSVCWRGKSKIMVAANSTGNIKLLEMV*

Protein Length: 178

Fln nts: TTGCTGTGTGCAGTTTCCACCTGATTCTGCAAATATGATAACGTTTGGTTCTGCTGATTACAAGATCTATTGTTATGATTTGCGCAAxxxAAAGATTCCATGGTGCACTTTAGCAGGTCATGGGAAGGCAGTTAGCTATGTAAAGTTCATAGATTCCAGCACAATTGTTTCTGCATCCACGGATAACACACTCAAGTTGTGGGATCTTACAAAAGCCAATCCTTCTGGGGTATCCAATAATGCTTGTACTCTGACCTATACTGGTCATACCAATGAGAAGAATTTTGTGGGACTTTCTGTCGTGGATGGATATATTGCATGTGGTTCAGAGACAAATTCTGTTTTTGCCTACTACAAATCTCTGCCTATGCCTATGGGATCACATAGATTTGGATTCGCAGACCCTATATCTAGTCAAGAAATGGAAGATGATAGTGGTCAATTTGTTTCAAGTGTATGCTGGAGAGGGAAATCAAAAATAATGGTGGCTGCAAATTCCACTGGCAATATTAAGTTGTTAGAGATGGTCTGAGAGTTTAAAAAAACCATCGGGGTGTAGTTTTTTGAAAGATCAAGAAAAGAGTGCCAAATTATTCCCTTTATTCCCTAAGATCATTTTCACATTTGATATACTCAATGGCAGGGAAGTGATTGAAAATTGGTCATGAATTGTAATCTTGAGGGCACGACAGATATAGAACATCTACTACCAGGATCGGTGAAGATATTTTCTTGGATTGGATGTCACTTCTTGTGAAGGTGTTACGAGATGCATGGTAGTTTGTGTGGGAAATGCGAGAAGCATCAATATCTGGATCAGCTAAAGCTTTGTTTGTAGGCCAAGAAAATGGGGTAACACTGCGGTTGCTTGTAAAAAATGAAAGAGATCAAGTATGATTCTTGTAATAGGAGATACCAACTTGTGTAGTAGTCACATACCAGAGAAATATCTCGAATACCTGTATACTAGTCATATGACTTGGTTCTTTTCTACTCAGAGTAGTAGAAGCCTTTATTGGGAATCAGAAAACTCAACAGTCTATTTGATTGGGTGGGTGAATATCTGTCTATTGATCAATCACTTTTAATTGTACAGCTCATTATTATCATTTTGTGAAGTTCAAATTCTGTTAAACAATTACCGAAGAAAGGTGCTTTTCGGTTTCTGATTAAGAATCTTTTCATAGACATCCTAAGAACGGGAAAATAAGGTGAACCAACAACAATGAAGCTGACATGCCTCTGAGTTTGGAGAAGCTGAACGATGTATTTTTCTCCTGGCATTTGCCTGTAGAATCAAGTGTGTGGGCTTTTTGTTGATTTTTGCTTATCCTATAATTCAAATTGATCATTGGGAAAAATAAATTTTGTTAGGACTACAACAGTTGTCATGTGCAAGTATCATCTTGGAGTCAAAGTTGCAGATTACAGAAATGTATATATTTATATTTTTAACCTGAGTTTTTCGATCC

Fln Alignment:

Contig617___CCVQFPPDSANMITFGSADYKIYCYDLRNxKIPWCTLAGHGKAVSYVKFIDSSTIVSASTDNTLKLWDLTKANPSGVSNNACTLTYTGHTNEKNFVGLSVVDGYIACGSETNSVFAYYKSLPMPMGSHRFGFADPISSQEMEDDSGQFVSSVCWRGKSKIMVAANSTGNIKLLEMV
D5ADQ7_____________CCVQFQPDSGHLIALGSADYKIYCYDLRNxKTPWYILASHSKTVSYVKFLDSASLVSASTDNTLKLWDLA-TNKGRILKNPVR-TFTGHTNVKNFVGLSVADGYIATGSETNEVFVYHKSLPMPVASYKFNCEDPMTGLEMEDDSAQFVSCVCWRGQTQTLVATNSTGNIKILEMV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1154	75		25		0.996473
1293		70		30	1.0
1380		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain