SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene613

Length: 4187 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene613
ATGGGGGACTCTGAGTTCAAAATGTCTCGTTGTTTTCCCGCTTAAATCCACAGACAGCACTAACAGAGCATATAAACCCTTACTTCCAGCTTCCCATTACCATATGTGCCAACAGATCGATACGCCATTGACGAAGGTCTTCGCTGGAATCGCTCTGCGAATAACAAAACCCCGGCCTAATCTTTTACGGTGATGAAATCGGTCCGGATCCAAGGAGCTTTCATCAGCCTGTAACCAAACAAACAAGAAGAATGGGACGCTTGCAGGATACACCTGACAATTCAAGTGCCATGGACTGTAACGGAAACAATGGCAAGAGCAGGTCCACTCAGCCGAGGCTTTTCATCAGAGAAATGGTTATGGAGAACTTCAAGTCCTATGCTGGAGAACAGCGGGTTGGCCCCTTCCACAAGAGTTTCTCAGCTGTGGTGGGCCCAAATGGGAGTGGTAAAAGCAATGTAATTGATGCAATGCTCTTTGTTTTTGGCAAGCGTGCTAAGCAGATGCGTTTGAACAAAGTATCTGAACTCATCCATAACTCCACTAATCATCAGAACCTAGAGAAAGCAAGTGTGTCCGTGCATTTCCAGGAAATAATTGATTTGGATGGTGAAAATTATGAACCTGTTAAAGGAAGTGATTTTGTTGTCACCCGTGTTGCTTTCCGAGACAATTCGTCCAAATATTATGTAAACAATCGAGGCAGTAATTTCACTGAAGTGACAAAGAAATTGAGATCAAAAGGAGTCGACTTGGATAACAATCGTTTTCTCATTCTGCAGGGTGAAGTAGAGCAAATATCATTGATGAAGCCCAAGTCACAAGGACCTCATGATGAAGGTTTTTTGGAGTACTTGGAGGATATTATTGGGTCTGATCAATACGTTGAAAAGATTGAGGAGGCCAGCAAAGAGCTTGAAGTTCTGAATGAAAAAAGATCAGGCATTGTTCAAAGAGTCAAATTAGCTGAAAAAGAAAAGGACTCTTTGGAGAGTGCCAAAAATGAAGCGGAAGCTTTTATGATGAAGGAAGCAGAACTATATAAATGGCAGGAGAAGGCTAGTGAACTTGCTTTACAGAATGCCAATACCCATGTAGCCGAGTTACAAGAAAATGTCAGGAAACTAGAAGGAAACCTTAAGGAGGAAAAAGAAAAGTTCAAACAAAATTCAAAGGCAATGAAGGAGCTTGAGGCAAACCACAATAAACATTTGAAGAGACAAGAGGAACTTGAAACAAAATTAAAAGCATGTAAGGACGAGTTCAAGGAATTTGAAAGGCAGGATGTCAAATATCGAGAGGATATAAAGCATATGAATCAAAAAATTGAAGAAAATAGAGGAAAAACTTGCAAAGGATGCTGCAAAGATTGAGGAGATTGAAAAGGAGTCAGAAGAATCAATCCAAATAATACCAAGACTTGAAGAAGAGATTGTGAAATTGTCGGAATCACTTACCGAGGAGGAAAAAGTGCTGGAGAAGATCAAAGAGAGTTCAAAAGTGGAAACAGAAAAGCATCGTGATGAACTTGCTAGTGTTCGAGCAGAGTTGGAACCTTGGGAAAAACAGCAAATTGATTGTAAAGGCAAGCTTGATGTTGCAAAATCTGAGAGCAAGCTTTTGCGACAGAAGCACGAGGCTGGACGAAAGGCTTTTGACACAGCACAAAATCAGATGAAGGAAATCAAACAGAAAATCAAGGATAAGGAGGTGGAACTTCGAAACATGGAGGCCGCAATAGACAAAAATAAGCTTTTAGGATCAGAAGCTCGAAGTGAAGAACAGACTTGCACAAAAGAAGAAGAGTCCCTTGCTTCTCTTGAACAAGCAGCGAGGCAAAAGGTATCAGAACTTTCCTCGATTTTGGAGTCAGAGAAGAGTCAGGGATCTGTTTTAAGGGCTATTCTTCAAGCAAAGGAATCAAAGCAGATACAGGGTATATATGGGCGGCTAGGAGACCTTGGTGCAATTCATGCAAAATATGACATTGCTATATCGACTGCTTGTGGAGGGCTTGATTTTATTGTGGTCGAAACTACATCTGCTGCCCAGTCGTGTGTTGAACTATTGCGCAGCAAGAACCTTGGTATCGCAACATTTATGATACTCGAGAAGCAAGAAAACCATCTACCCAGATTGAAGGAGAAAGTTAAAACACCTGAAGGAGTTCCACGGTTATTTGACTTAATTACTGTTCAGGAAGAACGTCTCAAATTAGCATTCTTTGCTGCACTGGGAAATACTGTTGTAGCAAAAGATCTCGACCAGGCCACAAGAATAGCCTATGGTCCAGACAAGGAATTCAGGCGTGTGGTCACATTGGATGGTGCAGTTTTTGAGAAGTCTGGTACAATGAGTGGTGGTGGGGGGAAACCCCAGGGTGGTAAGATGGGAACATCCATTCGGTCTTCTAGTGTTTCTGGAGAAGCTATTGCAAATGCTGAAAAGGAGCTTGAAAGCTTGGTTGAACAATTGAAAATCTTACGGCAAAGGATAAGTGGTGCTGTGAAGCAGTATCAAGGAGCTGAAAAGGCCCTGTCACATTTGGAGTTGGAAATAGCCAAGGCTCGAATGGAGATAGAAGGGTTGAGTGCTAGGCATGCTGACATTGAGAAGCAGCTTGACTCTTTAAAGTCTGCCGCACAGCCATCAAAGATTGAGATAGAAAGATTGAAAGAACTTGATCAGATTATTGCTAATGAAGAAAAGGAGCTTGCACATCTTGTGAAGGGTTCTAAAAAGCTGAAAGAGAAGGCGGGCGACCTTCAAAATAAGATAGAGAATGCAGGAGGAGAGAAATTAAAGAAACAAAAAGAGAAAGTAGCAAAACTACAGGGTGATATTGATAAGTCAAATACAGAAATAAATCGTCGTAAGGTTCAGATTAACACGGGCAAGAAAACACTCCAAAAATTACAGAAGGCAATTGAGGAGGGAACAAAAGAAAAGGAGAAAGCTGGTGATGAGAAAGAGAAGAAGGCAGCCAATTTCAAAGAGACCGAAGAGAAAGCAGTTTTGGTGGAAGAAAATTATAAAATAACAGAAGAGGTACTAGACAAACATAATGAAGAGTTGGAGAAAACTAAGAAAGAGTTCAATGAACTAAAGAAGACAATGGAAGAGCTGCGATCAGGAGAGGTTGATGTGCAATACAAACTAGAAGACACGAAGAAAATCACCAAGGATTGGGAAATGAAGGCAAAGGGCTACACGAAGAAGCTAGAAGAAATCCACAAGGCTCTTGCACAACATATTGAGCAAATTCGAAATGAAGGGATTGATCCTGCATTGCTCCAGGCAACCCTAGGAAATGAGCAATTGCTTGAACCTTGTAGCCTAGAGACAGCATTGGAAAAAGTTGCATTGTTTGAGGCTCAACTTAAGGAGTCGAAGCCAAGTCTGGATGCAATCCAAGAGTACCGGAACAAGGCTGCTTTATATAATGAACGTGTTCAGGAACTTAATACTGTAACTCAAGAACGTGATGATCTCAAGAGACAACACGATGAGCTACGGAAGAAACGGCTGGATGAGTTCATGGCAGGCTTCAATACTATTTCACTGAAATTGAAAGAAATGTATCAGATGATCACTCTTGGGGGTGATGCTGAATTGGAGCTTGTTGACTCGTTGGATCCCTTTGCTGAAGGTGTCGTTTTCAGTGTCCGCCCTCCTAAAAAGAGCTGGAAAAACATTGCTAATTTATCTGGTGGTGAAAAGACATTAAGCTCATTGGCACTGGTCTTTGCACTTCATCATTATAAACCTACTCCTCTCTATGTTATGGATGAAATTGATGCTGCTTTAGATTTTAAGAATGTCTCGATAGTGGGCCACTACATCAAGGATCGTACTAAGGATGCCCAATTCATAATTATAAGTTTGAGAAACAACATGTTCGAGTTGGCAGACAGATTGATTGGTATATACAAAACTGACAACTGCACAAAAAGTGTAACTATCGATCCAAGGAGCTTTGCTGTTAGTGCAGGTGCAAATTAAACTTTCTACACTAATGGTGTAGGTACAGTTCTATCTTATTGTAAAGTATCCATTACTCATGGGTACTGTGGATATGTCTGATTATGTAACAGTTGATCGATTAGTTTCTCATCAGAAATTGTTTGTAAAACGTTTATTATTATTATTATTTTTTAATGCAATTGAAAGTATAACTTTAATGTTGC

Ace file of the UniGene sp_v2.0_unigene613 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative SMC protein [Oryza sativa Japonica Group] gb\|EEC79459.1\| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb\|EEE64226.1\| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	SMCs flexible hinge	IPR010935	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9A1

Fln msg: your sequence is longer than subject: 776 - 295

Fln protein: MKEIKQKIKDKEVELRNMEAAIDKNKLLGSEARSEEQTCTKEEESLASLEQAARQKVSELSSILESEKSQGSVLRAILQAKESKQIQGIYGRLGDLGAIHAKYDIAISTACGGLDFIVVETTSAAQSCVELLRSKNLGIATFMILEKQENHLPRLKEKVKTPEGVPRLFDLITVQEERLKLAFFAALGNTVVAKDLDQATRIAYGPDKEFRRVVTLDGAVFEKSGTMSGGGGKPQGGKMGTSIRSSSVSGEAIANAEKELESLVEQLKILRQRISGAVKQYQGAEKALSHLELEIAKARMEIEGLSARHADIEKQLDSLKSAAQPSKIEIERLKELDQIIANEEKELAHLVKGSKKLKEKAGDLQNKIENAGGEKLKKQKEKVAKLQGDIDKSNTEINRRKVQINTGKKTLQKLQKAIEEGTKEKEKAGDEKEKKAANFKETEEKAVLVEENYKITEEVLDKHNEELEKTKKEFNELKKTMEELRSGEVDVQYKLEDTKKITKDWEMKAKGYTKKLEEIHKALAQHIEQIRNEGIDPALLQATLGNEQLLEPCSLETALEKVALFEAQLKESKPSLDAIQEYRNKAALYNERVQELNTVTQERDDLKRQHDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYIKDRTKDAQFIIISLRNNMFELADRLIGIYKTDNCTKSVTIDPRSFAVSAGAN*

Protein Length: 777

Fln nts: ATGGGGGACTCTGAGTTCAAAATGTCTCGTTGTTTTCCCGCTTAAATCCACAGACAGCACTAACAGAGCATATAAACCCTTACTTCCAGCTTCCCATTACCATATGTGCCAACAGATCGATACGCCATTGACGAAGGTCTTCGCTGGAATCGCTCTGCGAATAACAAAACCCCGGCCTAATCTTTTACGGTGATGAAATCGGTCCGGATCCAAGGAGCTTTCATCAGCCTGTAACCAAACAAACAAGAAGAATGGGACGCTTGCAGGATACACCTGACAATTCAAGTGCCATGGACTGTAACGGAAACAATGGCAAGAGCAGGTCCACTCAGCCGAGGCTTTTCATCAGAGAAATGGTTATGGAGAACTTCAAGTCCTATGCTGGAGAACAGCGGGTTGGCCCCTTCCACAAGAGTTTCTCAGCTGTGGTGGGCCCAAATGGGAGTGGTAAAAGCAATGTAATTGATGCAATGCTCTTTGTTTTTGGCAAGCGTGCTAAGCAGATGCGTTTGAACAAAGTATCTGAACTCATCCATAACTCCACTAATCATCAGAACCTAGAGAAAGCAAGTGTGTCCGTGCATTTCCAGGAAATAATTGATTTGGATGGTGAAAATTATGAACCTGTTAAAGGAAGTGATTTTGTTGTCACCCGTGTTGCTTTCCGAGACAATTCGTCCAAATATTATGTAAACAATCGAGGCAGTAATTTCACTGAAGTGACAAAGAAATTGAGATCAAAAGGAGTCGACTTGGATAACAATCGTTTTCTCATTCTGCAGGGTGAAGTAGAGCAAATATCATTGATGAAGCCCAAGTCACAAGGACCTCATGATGAAGGTTTTTTGGAGTACTTGGAGGATATTATTGGGTCTGATCAATACGTTGAAAAGATTGAGGAGGCCAGCAAAGAGCTTGAAGTTCTGAATGAAAAAAGATCAGGCATTGTTCAAAGAGTCAAATTAGCTGAAAAAGAAAAGGACTCTTTGGAGAGTGCCAAAAATGAAGCGGAAGCTTTTATGATGAAGGAAGCAGAACTATATAAATGGCAGGAGAAGGCTAGTGAACTTGCTTTACAGAATGCCAATACCCATGTAGCCGAGTTACAAGAAAATGTCAGGAAACTAGAAGGAAACCTTAAGGAGGAAAAAGAAAAGTTCAAACAAAATTCAAAGGCAATGAAGGAGCTTGAGGCAAACCACAATAAACATTTGAAGAGACAAGAGGAACTTGAAACAAAATTAAAAGCATGTAAGGACGAGTTCAAGGAATTTGAAAGGCAGGATGTCAAATATCGAGAGGATATAAAGCATATGAATCAAAAAATTGAAGAAAATAGAGGAAAAACTTGCAAAGGATGCTGCAAAGATTGAGGAGATTGAAAAGGAGTCAGAAGAATCAATCCAAATAATACCAAGACTTGAAGAAGAGATTGTGAAATTGTCGGAATCACTTACCGAGGAGGAAAAAGTGCTGGAGAAGATCAAAGAGAGTTCAAAAGTGGAAACAGAAAAGCATCGTGATGAACTTGCTAGTGTTCGAGCAGAGTTGGAACCTTGGGAAAAACAGCAAATTGATTGTAAAGGCAAGCTTGATGTTGCAAAATCTGAGAGCAAGCTTTTGCGACAGAAGCACGAGGCTGGACGAAAGGCTTTTGACACAGCACAAAATCAG_-_ATGAAGGAAATCAAACAGAAAATCAAGGATAAGGAGGTGGAACTTCGAAACATGGAGGCCGCAATAGACAAAAATAAGCTTTTAGGATCAGAAGCTCGAAGTGAAGAACAGACTTGCACAAAAGAAGAAGAGTCCCTTGCTTCTCTTGAACAAGCAGCGAGGCAAAAGGTATCAGAACTTTCCTCGATTTTGGAGTCAGAGAAGAGTCAGGGATCTGTTTTAAGGGCTATTCTTCAAGCAAAGGAATCAAAGCAGATACAGGGTATATATGGGCGGCTAGGAGACCTTGGTGCAATTCATGCAAAATATGACATTGCTATATCGACTGCTTGTGGAGGGCTTGATTTTATTGTGGTCGAAACTACATCTGCTGCCCAGTCGTGTGTTGAACTATTGCGCAGCAAGAACCTTGGTATCGCAACATTTATGATACTCGAGAAGCAAGAAAACCATCTACCCAGATTGAAGGAGAAAGTTAAAACACCTGAAGGAGTTCCACGGTTATTTGACTTAATTACTGTTCAGGAAGAACGTCTCAAATTAGCATTCTTTGCTGCACTGGGAAATACTGTTGTAGCAAAAGATCTCGACCAGGCCACAAGAATAGCCTATGGTCCAGACAAGGAATTCAGGCGTGTGGTCACATTGGATGGTGCAGTTTTTGAGAAGTCTGGTACAATGAGTGGTGGTGGGGGGAAACCCCAGGGTGGTAAGATGGGAACATCCATTCGGTCTTCTAGTGTTTCTGGAGAAGCTATTGCAAATGCTGAAAAGGAGCTTGAAAGCTTGGTTGAACAATTGAAAATCTTACGGCAAAGGATAAGTGGTGCTGTGAAGCAGTATCAAGGAGCTGAAAAGGCCCTGTCACATTTGGAGTTGGAAATAGCCAAGGCTCGAATGGAGATAGAAGGGTTGAGTGCTAGGCATGCTGACATTGAGAAGCAGCTTGACTCTTTAAAGTCTGCCGCACAGCCATCAAAGATTGAGATAGAAAGATTGAAAGAACTTGATCAGATTATTGCTAATGAAGAAAAGGAGCTTGCACATCTTGTGAAGGGTTCTAAAAAGCTGAAAGAGAAGGCGGGCGACCTTCAAAATAAGATAGAGAATGCAGGAGGAGAGAAATTAAAGAAACAAAAAGAGAAAGTAGCAAAACTACAGGGTGATATTGATAAGTCAAATACAGAAATAAATCGTCGTAAGGTTCAGATTAACACGGGCAAGAAAACACTCCAAAAATTACAGAAGGCAATTGAGGAGGGAACAAAAGAAAAGGAGAAAGCTGGTGATGAGAAAGAGAAGAAGGCAGCCAATTTCAAAGAGACCGAAGAGAAAGCAGTTTTGGTGGAAGAAAATTATAAAATAACAGAAGAGGTACTAGACAAACATAATGAAGAGTTGGAGAAAACTAAGAAAGAGTTCAATGAACTAAAGAAGACAATGGAAGAGCTGCGATCAGGAGAGGTTGATGTGCAATACAAACTAGAAGACACGAAGAAAATCACCAAGGATTGGGAAATGAAGGCAAAGGGCTACACGAAGAAGCTAGAAGAAATCCACAAGGCTCTTGCACAACATATTGAGCAAATTCGAAATGAAGGGATTGATCCTGCATTGCTCCAGGCAACCCTAGGAAATGAGCAATTGCTTGAACCTTGTAGCCTAGAGACAGCATTGGAAAAAGTTGCATTGTTTGAGGCTCAACTTAAGGAGTCGAAGCCAAGTCTGGATGCAATCCAAGAGTACCGGAACAAGGCTGCTTTATATAATGAACGTGTTCAGGAACTTAATACTGTAACTCAAGAACGTGATGATCTCAAGAGACAACACGATGAGCTACGGAAGAAACGGCTGGATGAGTTCATGGCAGGCTTCAATACTATTTCACTGAAATTGAAAGAAATGTATCAGATGATCACTCTTGGGGGTGATGCTGAATTGGAGCTTGTTGACTCGTTGGATCCCTTTGCTGAAGGTGTCGTTTTCAGTGTCCGCCCTCCTAAAAAGAGCTGGAAAAACATTGCTAATTTATCTGGTGGTGAAAAGACATTAAGCTCATTGGCACTGGTCTTTGCACTTCATCATTATAAACCTACTCCTCTCTATGTTATGGATGAAATTGATGCTGCTTTAGATTTTAAGAATGTCTCGATAGTGGGCCACTACATCAAGGATCGTACTAAGGATGCCCAATTCATAATTATAAGTTTGAGAAACAACATGTTCGAGTTGGCAGACAGATTGATTGGTATATACAAAACTGACAACTGCACAAAAAGTGTAACTATCGATCCAAGGAGCTTTGCTGTTAGTGCAGGTGCAAATTAA___ACTTTCTACACTAATGGTGTAGGTACAGTTCTATCTTATTGTAAAGTATCCATTACTCATGGGTACTGTGGATATGTCTGATTATGTAACAGTTGATCGATTAGTTTCTCATCAGAAATTGTTTGTAAAACGTTTATTATTATTATTATTTTTTAATGCAATTGAAAGTATAACTTTAATGTTGC

Fln Alignment:

Contig613___MEELRSGEVDVQYKLEDTKKITKDWEMKAKGYTKKLEEIHKALAQHIEQIRNEGIDPALLQATLGNEQLLEPCSLETALEKVALFEAQLKESKPSLDAIQEYRNKAALYNERVQELNTVTQERDDLKRQHDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYIKDRTKDAQFIIISLRNNMFELADRLIGIYKTDNCTKSVTIDPRSFAVSAGAN
D5A9A1_____________MEELRSGEVDAQYKLEDMKKITKDWEMKAKGYTKKLEEIHKALAQHIEQIRNEGIDPALLQATLGNEQLLQPCSLETAMEKVALFEAQLKESKPSLDAIQEYRNKAALYNERVQELNTVTQERDDLKKQRDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDASLDFKNVSIVGHYIKDRTKDAQFIIISLRNNMFELADRLIGIYKTDNCTKSVTIDPRSFSVSAGAN

SNPs (tot: 3)

Position	A %	C %	G %	Probability
3885	66		33	0.997452
4096	62		37	1.0
4103	80	20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
36	52	AAT AAT AAT AAT AAT AA	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain