SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene599

Length: 2357 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene599
GTAAAGGCCCCACGCAGAAACGCGCCCTGTTCACGTCGGGACCGGGACCAGGAACGACAATAAACCTTCACATCGCCCCTGTAGTTTCGAAATTAAACATATAGCCAAGAAAAAGGAGGATTGGTGTCAGCGGCGACATACAAAGTTTATGTGCCCATCTTGCTGCTGGAAATTGATGGAACAGCTCGTGAATTTCGTTATCCGTCCGCCCAGAGCTGATTATAGTCCCACACATGACTTACTAGAGCCGGAGTTTGTTCTTAGAGGACGCACATTTCGGCGCAAAGATTTGGAGGTTGTTAGTGAACATGGGCATATCTTGAAGTGCAGCCATTACATGCCACACCCAATACCTCAAGGCAGAACATTACCATGTGTAATTTATTGTCATGGAAACAGTGGATGCCGAGCGGATGCTATTGAAGCTGTCATGATTTTGCTTCCTTCATATATTACAGTGTTCACCCTTGATTTCTCTGGCTCTGGACTATCAGATGGAGAATATGTCACTTTGGGGTGGAGGGAGAAGGATGATTTGAAGGCAGTCGTCAACTTTTTGCGAACAGATGAACAAGTTTCATGCATTGGTTTGTGGGGTCGATCAATGGGGGCTGTAACAAGCTTGATGTATGGGGCTGAAGATCCATCAATTGCAGGGCTGGTTCTTGATAGTCCTTTTGCAAACTTAGTTGATCTGATGATGGAGCTGGTTGATGTGTACAAGATCCGCCTCCCAAAGTTCACTGTTAAAGTTGCAGTTCAATATATGCGAAAGGTGATCCAGAAGAAGGCGCATTTTGATATCATGGATCTTGATGTTGTTAAGATAGCGACAAAATCTTTTATTCCTGCATTATTTGGACATGGCACAGGGGACCTTTTTATTCAGCCTCATCATTCAGATCTCATATATAACTCATATGCAGGTGACAAAAACATCATCAAGTTTGAGGGTGACCACAACTCTCCACGACCACCATTCTATTATGATTCAATAAGCATTTTCTTTCATAATGTCTTGCATCCTCCAGATGATTTGATTGAACAACATGCTTCTGAATGTTTATATGACTACTTCGATGAATTAGGAAATCTGGATGAGAACGTGTTGCATGAAGGTCCAGGATCCACACAAAATGATACCACTGAAGATGCCATTGATAATTTTTGCCCTAGGTGGCAAATGAGTAGAACTGAGGTACCTTTTGAATTTGCAGACAACTCAGAAAAAACTGTAGGCATCATCCATGCAGAGGACTTAAGTGGACAGGAGAGGAAAGAAAACAGTGATGCTGAAGGTACATCCAATAAATGCGATAAAAGCAGTGACAGCATCCTTGACAAAAATTGCATTGATACTGTAGCAGCATTTCCCACAGGCAACCAAGTTTCTGACTGTCCTTTGGATAGATTTGCTCAAGTTCCAATTTCAATAGATGATGAAGAAAGGATGGTCATGGAAGCAATCATTGCCTCCCTTCGAGATATGGAAACTGGAGAAGCTTCTCAAAATAAAACCTCCCAACCTTCAGATACTATATCCTCTAAGAAAGCTTCAGAAACATTTTTCAAGACATTTATAGTGGCCCTGAAAAAGAGTTTTCACAGGCCACAACGTCTGAAATAATGATATCACCATGTACGGATGGTTCCCAAACACAATCTGGTTCACCTGATAAAGTCAAGGCACAAACTGAGACTTGTTATGACTCATCTGCTGAAAGCAACACATCAACAAGCATATCAAAAGGAAGCCACCAACAGGGTAGTTTTTTCCATAATGACCAATAGCAACAGCTGCAACCAGTGGGTTTGTCTATGATGGCAATATCCTTAAAATGGCGAAGCGTGAAGCCTAGCAAACAGCCAACAGTATTTGTTTGTACATTATCAATTCAGTGTACTTACTACATATGATGAATTATAAATTAAGGCCTATTGGGGTCTGGCAGTTTCATGTTGCCCACTGTTGACATCATTGTAATTTTAGAGCTTCTGATCCAGGGTATTGGCTTTGATTACTTTTAAAAAGACACAAAACAGGTAAGTGGAACCAGTGCAGAATTATATTTTATAAACCTGCACTTACCACATCCTGTGACAATTGTTTCGTCATGTATCAAGAATGTCAACTTGCTGTCATTTGTCAGAGAGGACACTGTTTCATGATATTGCGTCCATAATCTGTTGCAATTATTTATATTTAGATTGGTTCGACATGGAAACTTTGGCATTCTGTAGTGGAAAATCTGCAGGAAAGTGGTTAAACGGCAATCTGTAAATACGTGTCCTTGGAGAAATGTTGTTGAAGGAAAATGTATTCATAATTTGCTCGTGGGTTCATCTCGATTGCAATC

Ace file of the UniGene sp_v2.0_unigene599 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RST1_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	esterase lipase domain-containing protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLI1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: RQNLLFLHYLDMAQGTFLFSLIIQISYITHMQVTKTSSSLRVTTTLHDHHSIMIQ*

Protein Length: 57

Fln nts: GTAAAGGCCCCACGCAGAAACGCGCCCTGTTCACGTCGGGACCGGGACCAGGAACGACAATAAACCTTCACATCGCCCCTGTAGTTTCGAAATTAAACATATAGCCAAGAAAAAGGAGGATTGGTGTCAGCGGCGACATACAAAGTTTATGTGCCCATCTTGCTGCTGGAAATTGATGGAACAGCTCGTGAATTTCGTTATCCGTCCGCCCAGAGCTGATTATAGTCCCACACATGACTTACTAGAGCCGGAGTTTGTTCTTAGAGGACGCACATTTCGGCGCAAAGATTTGGAGGTTGTTAGTGAACATGGGCATATCTTGAAGTGCAGCCATTACATGCCACACCCAATACCTCAAGGCAGAACATTACCATGTGTAATTTATTGTCATGGAAACAGTGGATGCCGAGCGGATGCTATTGAAGCTGTCATGATTTTGCTTCCTTCATATATTACAGTGTTCACCCTTGATTTCTCTGGCTCTGGACTATCAGATGGAGAATATGTCACTTTGGGGTGGAGGGAGAAGGATGATTTGAAGGCAGTCGTCAACTTTTTGCGAACAGATGAACAAGTTTCATGCATTGGTTTGTGGGGTCGATCAATGGGGGCTGTAACAAGCTTGATGTATGGGGCTGAAGATCCATCAATTGCAGGGCTGGTTCTTGATAGTCCTTTTGCAAACTTAGTTGATCTGATGATGGAGCTGGTTGATGTGTACAAGATCCGCCTCCCAAAGTTCACTGTTAAAGTTGCAGTTCAATATATGCGAAAGGTGATCCAGAAGAAGGCGCATTTTGATATCATGGATCTTGATGTTGTTAAGATAGCGACAAAATCTTTTATTCCTGCATTATTTGGACATGGCACAGGGGACCTTTTTATTCAGCCTCATCATTCAGATCTCATATATAACTCATATGCAGGTGACAAAAACATCATCAAGTTTGAGGGTGACCACAACTCTCCACGACCACCATTCTATTATGATTCAATAA___GCATTTTCTTTCATAATGTCTTGCATCCTCCAGATGATTTGATTGAACAACATGCTTCTGAATGTTTATATGACTACTTCGATGAATTAGGAAATCTGGATGAGAACGTGTTGCATGAAGGTCCAGGATCCACACAAAATGATACCACTGAAGATGCCATTGATAATTTTTGCCCTAGGTGGCAAATGAGTAGAACTGAGGTACCTTTTGAATTTGCAGACAACTCAGAAAAAACTGTAGGCATCATCCATGCAGAGGACTTAAGTGGACAGGAGAGGAAAGAAAACAGTGATGCTGAAGGTACATCCAATAAATGCGATAAAAGCAGTGACAGCATCCTTGACAAAAATTGCATTGATACTGTAGCAGCATTTCCCACAGGCAACCAAGTTTCTGACTGTCCTTTGGATAGATTTGCTCAAGTTCCAATTTCAATAGATGATGAAGAAAGGATGGTCATGGAAGCAATCATTGCCTCCCTTCGAGATATGGAAACTGGAGAAGCTTCTCAAAATAAAACCTCCCAACCTTCAGATACTATATCCTCTAAGAAAGCTTCAGAAACATTTTTCAAGACATTTATAGTGGCCCTGAAAAAGAGTTTTCACAGGCCACAACGTCTGAAATAATGATATCACCATGTACGGATGGTTCCCAAACACAATCTGGTTCACCTGATAAAGTCAAGGCACAAACTGAGACTTGTTATGACTCATCTGCTGAAAGCAACACATCAACAAGCATATCAAAAGGAAGCCACCAACAGGGTAGTTTTTTCCATAATGACCAATAGCAACAGCTGCAACCAGTGGGTTTGTCTATGATGGCAATATCCTTAAAATGGCGAAGCGTGAAGCCTAGCAAACAGCCAACAGTATTTGTTTGTACATTATCAATTCAGTGTACTTACTACATATGATGAATTATAAATTAAGGCCTATTGGGGTCTGGCAGTTTCATGTTGCCCACTGTTGACATCATTGTAATTTTAGAGCTTCTGATCCAGGGTATTGGCTTTGATTACTTTTAAAAAGACACAAAACAGGTAAGTGGAACCAGTGCAGAATTATATTTTATAAACCTGCACTTACCACATCCTGTGACAATTGTTTCGTCATGTATCAAGAATGTCAACTTGCTGTCATTTGTCAGAGAGGACACTGTTTCATGATATTGCGTCCATAATCTGTTGCAATTATTTATATTTAGATTGGTTCGACATGGAAACTTTGGCATTCTGTAGTGGAAAATCTGCAGGAAAGTGGTTAAACGGCAATCTGTAAATACGTGTCCTTGGAGAAATGTTGTTGAAGGAAAATGTATTCATAATTTGCTCGTGGGTTCATCTCGATTGCAATC

Fln Alignment:

Contig599___QNLLFLHYLDMAQGTFLFSLIIQISYITHMQVTKT
A9NLI1_____________QSLLFLHYLDMAWRTILSSLIIQISYTTHMLVTKT

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
1083	33			66	0.997452
1084	33			66	0.997452
1086		66	33		0.997452
1266		83	16		0.994512
1383		10		90	0.90298
1384	10		90		0.90298
1385			90	10	0.90298
1583		12		87	0.992554
1664		12		87	0.992554
1666	87	12			0.992554
1716		18		81	0.999994
1720	10			90	0.90298
1739	90			10	0.90298
1740			90	10	0.90298
1872		33		66	1.0
1875		33		66	1.0
1877	33	66			1.0
1882		66		33	1.0
2021	11			88	0.923564
2027			88	11	0.923564
2057			37	62	1.0
2078		12		87	0.992554
2132	11			88	0.923564
2133	22		77		0.999999
2134		11		88	0.923564
2135	11		88		0.923564
2136			77	22	0.999999
2137			88	11	0.923564
2142		12		87	0.992554
2144	87			12	0.992554
2148		14	85		0.993533
2149	14	85			0.993533
2151		85		14	0.993533
2239	80	20			0.995493
2242	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain