SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene597

Length: 2117 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene597
AATGTCTGGGATATTAATTTAGGGCTTTTCCATACGCGTCAGGTGTTTTCATCATATTTTATTTAAGCCTACTGAGCAGTCAATATGAGCCGTTTTATCTGACCATCTCCCTGAATTCTAGCTTTAGGGCATCATTCCGAGCTTGCAGCAACACGCGTCCTTGAATTTCGTCAATTTGTTCGTCTCTCGAGATTTTCCCTCATTTCTGAAATTACAGCCGTTTTCATGTTTCGAGAGTCATTGGTTGCTGCAGCAATAGAGCATTGCTGTGAATATACAGTGACATTATTTCTCAAGGCAAGCAGGGTGGAGTATCATTCCACAGCATTAGGTTACGATTGTTTGAGCTTCTACAATGAAAAAGACTAACCAGGGACAGTTACATTATGTATTTCTAGTTGCAGGAATGGTCTGCCTTCAAATCTTTGCTCCCAAATGTTCTGCAGCAAAAACTCAGGGAATGTTGGATAGTATTATGGGTTTCCTTCGAGGACGCCCCACTATACAAGCAACAGAGCAGCAACTACGACACCAGAAACAGAATTCTTCTTTTCCAGTACAGAATCCGGAAGAAGTAGTTAAAATGGTTCAAAAAAGTATCAATGATTCTCGAAGACAGCTTACCTATTTGACCTGTGGAACCGGGAATCCCATCGATGACTGTTGGCGCTGTGATCCAAACTGGCAAATGAACAGGCAAAAACTTGCAGATTGTGCCATTGGCTTTGGCCGAGAGGCCATTGGAGGGAAGAATGGTCAATACTATGTGGTAACTGATCCCAGTGACCATGATCCTGTGAATCCCACCCCCGGTACTCTTCGCTACGCCGTTATTCAAAACGAGCCGTTATGGATTATATTCGAGAGCGACATGATCATTCAGCTCAAGGAAGAGCTCCTCATGAACAGCTTCAAGACAATCGATGGCAGAGGCGTTGATGTCCACATTGCTCATGGTGCCTGCATTACGATACAGTATGTGACCAACATCATCATTCATGGCGTTAGCATCCACGACTGCATTCAGACGGGCAATGCTATGGTGAGGGATTCTCCAGAACATTATGGCTGGAGAACGTTGGCAGACGGGGATGGCATTTCAATTTTTGGAGGACGCTACATCTGGATAGACCGCTGTGCTTTTTCCAGCTGTAACCACGGCCTAATAGATGCAATCATGGGATCCACTGCCATCACCATATCAAACAATTACTTCACTCAGCATGACCTGGTCATGCTTCTTGGTCACAGCGACAGCTATGTGCAAGATGTTATAATGCAAGTAACGATCGCCTACAATTACTTCGGGGAAGGGCTTGTCCAAAGGATGCCTAGGTGTCGACATGGGTACTTTCACGTGGTGAACAACCAGTATGTACACTGGGAAATGTATGCAATCGGTGGGAGCGCTAACCCAACAATTAACAGTGAAGGCAACATATTCATAGCGTCCGATGACGCCAACGTTAAGCAGGTAACTAAACGGGTTACTGCAGGAGACGAGGGAGAGGAGGCAAACGAGGTATGGCAGGACTGGAACTGGAGATCGGTAGGAGACCAAATGCTGAACGGTGCATATTTTGTCCCTTCAGGCTCCATAGCGGACTCTAGCTATACCCTAGCCTCCAGTCTGGGAGCAAAGCCAGCGGTCTTTGTCGAAACCCTTACCGAAGAGGCAGGCGTCTTACAAGGCAGATCCCAAACAAGTAGCCGCAACGGCAACAGTCATCTGTCAGTTTCAGCTGCACCGAGTTCAATCTTGTCAGCGTCTCACCGTCATCAGATAATATTCTTCTTCATGTGCACTGCGTGGCTAGTATTGACAGCGTTGAACGTTTGAAGGTAGTGTTTGTCTTCTTCCTATGGACAATCGTTTAATACGAGCTGGTATTGACAGCGTTGAACGTTTGAAGGTAGTGTTTGTCTTCTTCCTCTGGACAATCGTTTAATACGAGCTGGAAGCCCAATTATCTCTGGTCTTGATGTCAGAACGTAGGTTCCGTGGGCCAATGTACGTTCTGTGAGCTGTGCCATTCCATGGATGATGTTCCAGTTTGTATCAAGTTTTTGTTATAAAAATTATTTCAAAAATATTGTATAGATTTTAGATATTAATA

Ace file of the UniGene sp_v2.0_unigene597 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase [Gossypium hirsutum]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	pectate lyase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectate lyase.	EC:4.2.2.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040		0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	pectate lyase activity	GO:0030570	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS41

Fln msg:

Fln protein: MKKTNQGQLHYVFLVAGMVCLQIFAPKCSAAKTQGMLDSIMGFLRGRPTIQATEQQLRHQKQNSSFPVQNPEEVVKMVQKSINDSRRQLTYLTCGTGNPIDDCWRCDPNWQMNRQKLADCAIGFGREAIGGKNGQYYVVTDPSDHDPVNPTPGTLRYAVIQNEPLWIIFESDMIIQLKEELLMNSFKTIDGRGVDVHIAHGACITIQYVTNIIIHGVSIHDCIQTGNAMVRDSPEHYGWRTLADGDGISIFGGRYIWIDRCAFSSCNHGLIDAIMGSTAITISNNYFTQHDLVMLLGHSDSYVQDVIMQVTIAYNYFGEGLVQRMPRCRHGYFHVVNNQYVHWEMYAIGGSANPTINSEGNIFIASDDANVKQVTKRVTAGDEGEEANEVWQDWNWRSVGDQMLNGAYFVPSGSIADSSYTLASSLGAKPAVFVETLTEEAGVLQGRSQTSSRNGNSHLSVSAAPSSILSASHRHQIIFFFMCTAWLVLTALNV*

Protein Length: 496

Fln nts: AATGTCTGGGATATTAATTTAGGGCTTTTCCATACGCGTCAGGTGTTTTCATCATATTTTATTTAAGCCTACTGAGCAGTCAATATGAGCCGTTTTATCTGACCATCTCCCTGAATTCTAGCTTTAGGGCATCATTCCGAGCTTGCAGCAACACGCGTCCTTGAATTTCGTCAATTTGTTCGTCTCTCGAGATTTTCCCTCATTTCTGAAATTACAGCCGTTTTCATGTTTCGAGAGTCATTGGTTGCTGCAGCAATAGAGCATTGCTGTGAATATACAGTGACATTATTTCTCAAGGCAAGCAGGGTGGAGTATCATTCCACAGCATTAGGTTACGATTGTTTGAGCTTCTACA_-_ATGAAAAAGACTAACCAGGGACAGTTACATTATGTATTTCTAGTTGCAGGAATGGTCTGCCTTCAAATCTTTGCTCCCAAATGTTCTGCAGCAAAAACTCAGGGAATGTTGGATAGTATTATGGGTTTCCTTCGAGGACGCCCCACTATACAAGCAACAGAGCAGCAACTACGACACCAGAAACAGAATTCTTCTTTTCCAGTACAGAATCCGGAAGAAGTAGTTAAAATGGTTCAAAAAAGTATCAATGATTCTCGAAGACAGCTTACCTATTTGACCTGTGGAACCGGGAATCCCATCGATGACTGTTGGCGCTGTGATCCAAACTGGCAAATGAACAGGCAAAAACTTGCAGATTGTGCCATTGGCTTTGGCCGAGAGGCCATTGGAGGGAAGAATGGTCAATACTATGTGGTAACTGATCCCAGTGACCATGATCCTGTGAATCCCACCCCCGGTACTCTTCGCTACGCCGTTATTCAAAACGAGCCGTTATGGATTATATTCGAGAGCGACATGATCATTCAGCTCAAGGAAGAGCTCCTCATGAACAGCTTCAAGACAATCGATGGCAGAGGCGTTGATGTCCACATTGCTCATGGTGCCTGCATTACGATACAGTATGTGACCAACATCATCATTCATGGCGTTAGCATCCACGACTGCATTCAGACGGGCAATGCTATGGTGAGGGATTCTCCAGAACATTATGGCTGGAGAACGTTGGCAGACGGGGATGGCATTTCAATTTTTGGAGGACGCTACATCTGGATAGACCGCTGTGCTTTTTCCAGCTGTAACCACGGCCTAATAGATGCAATCATGGGATCCACTGCCATCACCATATCAAACAATTACTTCACTCAGCATGACCTGGTCATGCTTCTTGGTCACAGCGACAGCTATGTGCAAGATGTTATAATGCAAGTAACGATCGCCTACAATTACTTCGGGGAAGGGCTTGTCCAAAGGATGCCTAGGTGTCGACATGGGTACTTTCACGTGGTGAACAACCAGTATGTACACTGGGAAATGTATGCAATCGGTGGGAGCGCTAACCCAACAATTAACAGTGAAGGCAACATATTCATAGCGTCCGATGACGCCAACGTTAAGCAGGTAACTAAACGGGTTACTGCAGGAGACGAGGGAGAGGAGGCAAACGAGGTATGGCAGGACTGGAACTGGAGATCGGTAGGAGACCAAATGCTGAACGGTGCATATTTTGTCCCTTCAGGCTCCATAGCGGACTCTAGCTATACCCTAGCCTCCAGTCTGGGAGCAAAGCCAGCGGTCTTTGTCGAAACCCTTACCGAAGAGGCAGGCGTCTTACAAGGCAGATCCCAAACAAGTAGCCGCAACGGCAACAGTCATCTGTCAGTTTCAGCTGCACCGAGTTCAATCTTGTCAGCGTCTCACCGTCATCAGATAATATTCTTCTTCATGTGCACTGCGTGGCTAGTATTGACAGCGTTGAACGTTTGA___AGGTAGTGTTTGTCTTCTTCCTATGGACAATCGTTTAATACGAGCTGGTATTGACAGCGTTGAACGTTTGAAGGTAGTGTTTGTCTTCTTCCTCTGGACAATCGTTTAATACGAGCTGGAAGCCCAATTATCTCTGGTCTTGATGTCAGAACGTAGGTTCCGTGGGCCAATGTACGTTCTGTGAGCTGTGCCATTCCATGGATGATGTTCCAGTTTGTATCAAGTTTTTGTTATAAAAATTATTTCAAAAATATTGTATAGATTTTAGATATTAATA

Fln Alignment:

Contig597___QGQLHYVFLVAGMVCLQIFAPKCSAAKTQGMLDSIMGFLRGRPTIQATEQQLRHQKQNSSFPVQNPEEVVKMVQKSINDSRRQLTYLTCGTGNPIDDCWRCDPNWQMNRQKLADCAIGFGREAIGGKNGQYYVVTDPSDHDPVNPTPGTLRYAVIQNEPLWIIFESDMIIQLKEELLMNSFKTIDGRGVDVHIAHGACITIQYVTNIIIHGVSIHDCIQTGNAMVRDSPEHYGWRTLADGDGISIFGGRYIWIDRCAFSSCNHGLIDAIMGSTAITISNNYFTQHDLVMLLGHSDSYVQDVIMQVTIAYNYFGEGLVQRMPRCRHGYFHVVNNQYVHWEMYAIGGSANPTINSEGNIFIASDDANVKQVTKRVTAGDEGEEANEVWQDWNWRSVGDQMLNGAYFVPSGSIADSSYTLASSLGAKPAVFVETLTEEAGVLQGRSQTSSRNGNS-HLSVSAAPSSILSASHRHQIIFFFMCTAWLVLTA
B8LS41_____________QSQLCYLILFAELICLQILAPKCSAEKTQGMMDSFMGFLRGRPTIQVTEQT---QQQNSSFPVEAPDEVVKMVQKSINDSRRQLSYLSCGTGNPIDDCWRCEPNWQMNRQRLADCAIGFGRDAIGGKNGRYYVVTDSSDEDAVNPKPGTLRHAVIQDEPLWIIFQSDMVIQLKEELMMNSFKTIDGRGADVHIAHGACITIQFVTNIIIHGVSIHDCFQAGNAMVRNTPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYFTHHDKVMLLGHSDSYVGDAIMQVTIAFNYFGEGLMQRMPRCRHGYFHIVNNHYSHWEMYAIGGSANPTINSEGNRFIAPDNANAKQVTKRLNAVD------EEWMRWNWRSAGDLMVNGAFFVPSGAGTGNNYALASSVGAKSAFLVKTITEDAGVLQSRTHSSRSNDNTGRMSVSAAPMSILSAAHSHQIIYFFLCALCYVLTA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1804		12		87	0.992554
1806		87		12	0.992554
1814	14			85	0.993533
1815		14	85		0.993533
1816	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain