SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene596

Length: 1854 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene596

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp\|A9LNK9.1\|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb\|ABX260	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	cleavage and polyadenylation specificity factor cpsf30	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	70%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	70%
Blast2go	RNA binding	GO:0003723	Molecular Function	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	70%
Blast2go	mRNA cleavage and polyadenylation specificity factor complex	GO:0005847	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Distance to subject end: 101 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 416 - 667

Fln protein: MEDPEGALSFDFEGGLEAGPAIPSYTHVLGNSIISDDLNTVTPSNGAAVFDVAGHKPSAQSGGRSFRQTVCRHWLRSLCMKGDDCGFLHQYDKSRMPVCRFFTRFGVCREQDCVYKHTNDEAKECNMYKLGFCPNGPDCRYRHQKMPGPPPPVEEVFQKTQQLAAAMNDAYPNRHPQHKHNNYHQSDRTYSQQPLASASQRLPGSSPVRGDPKNQQKQRIHRLPQHQANQSQGQSLNPMENGLLSQPNTVSAAMPLPQGHSRYFIVKSSNRENLELSVQQGMWATQRNNEAKLNEAFDSCDNVILIFSINRTRHFQGCAKMMSKIGGFVGGGGWKYAHGTAHYGRNFSLKWLKLCELTFQKTRHLRNPYNENLPVKISRDCQELENSIGEQLASLLYLEPDSELMATACAVESKRK

Protein Length: 417

Fln nts: ATGGGGGGAGCTTCCGGCGATCGGAAAACCGAGCTTGAAACCTGACAAAAGAACTAGGAAGCTTGTATACACCGAGTAGAACTCCAATATTGCAGCAAGAACTCAAATATTGCAGCAACAATTGACATAATCGCGTCGGGCACATTTTCTTCGTCCCAACGAGTTCTATGTCGCGGAAAATGGCGAAGATTTGAAGGAGAAATCGTACTTACAAATACTGAAAAGAAGGGGTAGATATATCATTTTCAAAGCCGAAGAAACCTATTATTTAGAGCTCAAGTTGACTCCGCATAACCTTCCATGGCACCTGCGGCGCTCATTTTTATATGAGGTGGGCGAATTTGTTCGAATTTTGGCTCTACACGGTTTGATGCGGCCGTTTGTTTGATTATATGAGTAAATAAAATCACTTTTGAAGCCCACAAAATTATGTGAAACATCGTCTTATTTCGAAGTAAATAGGGTTTATAACAAGGGCTCACGGTTTGATGGAGGGTGCAGAGGAAGTTTGAAGACATTAGGGTTTAACACAAAGGCTTAGGGTTCGATGGAGGATCTACAGACGGTTTAAAGAAGTTAGTGTTGAAAACAAGAGAAGGTTTAG_-_ATGGAGGATCCAGAGGGGGCTTTGAGCTTTGATTTCGAGGGTGGTCTAGAAGCAGGGCCCGCTATTCCTTCTTATACACATGTATTGGGAAATTCTATAATTTCAGATGATTTAAATACCGTAACCCCTTCAAATGGGGCAGCTGTTTTTGACGTCGCTGGACACAAACCCTCTGCACAGTCTGGCGGAAGGAGTTTCAGGCAGACTGTGTGCAGGCACTGGCTGAGGAGTTTATGCATGAAGGGTGATGATTGTGGGTTCCTGCATCAGTATGACAAGAGCCGGATGCCGGTCTGTCGGTTCTTTACCCGATTTGGTGTGTGCAGAGAGCAGGATTGTGTTTACAAGCACACAAACGACGAAGCGAAAGAATGTAATATGTACAAACTTGGTTTCTGTCCAAATGGGCCTGATTGTCGATACAGGCATCAAAAGATGCCTGGTCCACCTCCACCTGTTGAAGAGGTTTTCCAAAAGACTCAACAGTTGGCTGCTGCCATGAATGATGCTTACCCAAACAGACATCCCCAGCACAAGCATAACAATTACCATCAATCAGATAGGACCTATTCTCAGCAGCCATTGGCAAGTGCTTCTCAGCGATTGCCTGGAAGTTCACCTGTACGTGGGGACCCAAAGAATCAGCAGAAACAACGGATACATCGTTTGCCCCAACATCAGGCCAATCAGAGTCAAGGCCAATCATTAAACCCCATGGAAAATGGATTATTGAGTCAACCTAACACAGTCTCTGCTGCAATGCCGCTTCCACAAGGACATTCTAGGTACTTTATTGTGAAGAGCAGCAATAGAGAAAATTTGGAACTCTCTGTACAACAAGGAATGTGGGCAACTCAACGAAATAATGAGGCAAAACTGAATGAAGCTTTTGATTCATGTGATAATGTAATTCTTATATTCTCAATCAACAGGACCCGCCATTTTCAGGGTTGTGCAAAGATGATGTCTAAAATTGGTGGATTTGTCGGTGGAGGGGGTTGGAAGTATGCACATGGGACTGCACATTATGGTCGAAACTTTAGTCTTAAGTGGTTGAAGCTTTGTGAGTTGACATTTCAAAAGACTCGGCATTTGAGGAATCCATACAATGAAAATTTACCTGTGAAGATCAGCCGAGATTGTCAAGAACTAGAGAATTCTATTGGGGAGCAGCTAGCTTCTCTGCTCTATTTGGAGCCAGACAGTGAACTTATGGCCACGGCATGTGCTGTTGAATCCAAACGCAAAGA

Fln Alignment:

Contig596___AAMPLPQGHSRYFIVKSSNRENLELSVQQGMWATQRNNEAKLNEAFD-----------SCDNVILIFSINRTRHFQGCAKMMSKIXXXXXXXXWKYAHGTAHYGRNFSLKWLKLCELTFQKTRHLRNPYNENLPVKISRDCQELENSIGEQLASL
D5A886_____________ADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVAKERSGGNPGSCP-VFLFFSVNASGQFCGVAEMVSSVDFHTSMNFWQ----QDKWNGFFPVKWHIIKDVPNSQFRHIILENNDHKPVTNSRDTQEIKFTQGIEMLNI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1013			80	20	0.995493
1038	80			20	0.995493
1082	83		16		0.994512
1396	16	83			0.994512
1398			16	83	0.994512
1522	14			85	0.993533
1524	85		14		0.993533
1525			14	85	0.993533
1725			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain