SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene595

Length: 1687 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene595

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3353 domain containing protein	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	77%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS20

Fln msg:

Fln protein: MAMVGLSIGVGEAPPKGPICGWGAKGGDARWRVPKRCGIVVCGGGYSRKPGPSWRSVGKENYRGQSGKRALQIHANSKADDSVPSEMSFETALNLLGVAEGASFEEILKAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNAGIGSTPEWLKKFLKNTPVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTTGGQFASTGADVPGLILATGFGASLYFLRKKNMKLGKAAVVTVGSLVAGAVLGGVVESWLQVDIVPLFGIRSPAVVVSEFVLLSQWLSSLYLQ*

Protein Length: 309

Fln nts: ATGGGGGCCCAGAACAATTTCTGAATCGGGTGAAACAGAAAGAAACTTCTGTTTTACCAGAGTTCGACAAAGAGATGACCCGTTGCTATCATGGATAAGTGTAACAAGGGGTGAAAATCGCACCTCGCCTCCCGTGGGGATTTCCATCCCACATAAATTAGCGGTCGTTTGCAAGCGTCCTACGCCAGCCACAATGTACAAATATCCACGGACTTGCCCACATGTTATTCCCCGCTCTCTGAAATCTGGCCAAGCAAGTAATATAACAATAATTGGAGCCTTCTGTGCCATTCAGCACCGTTCCTTTCCTCAGCTGCTTCAAG_-_ATGGCAATGGTGGGTTTGTCGATTGGCGTGGGCGAAGCGCCGCCGAAGGGTCCTATCTGCGGTTGGGGAGCGAAGGGGGGAGATGCTCGTTGGAGGGTTCCGAAACGGTGTGGAATAGTGGTTTGTGGAGGAGGGTATTCAAGAAAGCCAGGACCGAGCTGGAGAAGCGTTGGGAAGGAGAATTATAGGGGACAGAGTGGTAAAAGGGCTTTGCAGATACATGCCAATTCTAAGGCAGATGATTCTGTGCCGTCTGAGATGTCTTTTGAGACTGCGTTGAATCTTCTGGGTGTTGCAGAAGGGGCTTCTTTTGAAGAAATCCTTAAGGCGAAGAATTCGATTTTGGATAGGAATAGAGAGGACCAGGAGCTCGCTGCCCAGGTAGAGGCTGCCTATGATATGCTTCTTATGCAAAGCTTTATGCAGCGCAGGGCCGGGAAAGTTGTAGATAGCAGTATTCGGTTTGCTGATGTCAAACAGAGAGGCAATGCTGGTATTGGTAGTACTCCAGAGTGGCTAAAGAAATTTTTGAAGAATACACCAGTTACTGTTGAACCACCATCTGCCAATGATCTGGGTATACAGACTGGGGTTTATGGAGCTCTTATGGTTTGGACATTTGTGAGTGGGGTTTCACAGACAACAGGAGGGCAGTTTGCCAGTACTGGAGCTGATGTACCTGGTCTGATATTAGCTACTGGGTTTGGAGCTTCACTTTACTTTTTACGCAAGAAAAACATGAAACTAGGAAAGGCAGCTGTAGTAACTGTTGGAAGTCTTGTGGCTGGAGCAGTACTTGGAGGAGTAGTGGAATCATGGTTACAGGTAGACATAGTTCCACTATTTGGGATCAGATCACCTGCTGTGGTCGTGAGCGAATTTGTACTTCTCTCTCAATGGCTATCTTCATTGTACCTACAATAG___ACGGGTAACAGGTAGTAAGGTTTCCATAATGAAATGAACCTTGCCAAAACTCATGTATATGTAGAGTAAGCTGGCAGGTGTTGCAACGCTGCACATGATTATTGAAGGTTCATTCTTGAGAATGCTACATTATCTCTTAATAATAAAATTTAAGAGGTTTCAATCTAGGCTTTAAAATGACTCTAGTTGATTTCAATTTCTATCTGTACATACATGTACAATCAGTCACAGTTTCTAGTGTCTTAGAAAAGGGTCATTTGCAATGTATAGCTTGACTCAGTTAATGTACATTTCATTTATTCTGCCAAAGCAGATCAGTTTCAGGTGACAGTTGTAGAAATGATTACAGTGACTCCTCACTTACGAGGAGATTTTTGCTGTGCCACTTCGGTATCTTGTGCAATGAAAGTGTAAAATTATAATATCCACCTATTTTGTTT

Fln Alignment:

Contig595___MAMVGLSIGVGEAPPKGPICGWGAKGGDARWRVPKRCGIVVCGGGYSRKPGPSWRSVGKENYRGQSGKRALQIHANSKADDSVPSEMSFETALNLLGVAEGASFEEILKAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNAGIGSTPEWLKKFLKNTPVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTTGGQFASTGADVPGLILATGFGASLYFLRKKNMKLGKXXXXXXXXXXXXXXXXXXXESWLQVDIVPLFGIRSPAVVVSEFV
A9NS20_____________MAMVGLSIGVAEAPPKVSICGQGAERGDARWKSLKRCRIVVCGGGYSRKPRPSWRSVRKENYWGHSGKRALQIHANSKADDSVPFEMSFENALKLLGVAEGASFEEILRAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNSGIGSTPEWLKKFLKNTRVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTAGGQLPSTGADVPGLILATGFGASLYFLRKKNMKLGKAAAVTVGGLVAGAVLGGVVESWLQVDIVPLFGIRSPAVVVSEFV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1252		14	85		0.993533
1255	85		14		0.993533
1258	85			14	0.993533
1261		14		85	0.993533
1262	85			14	0.993533
1266	85			14	0.993533
1267		14	85		0.993533
1268	14		85		0.993533
1271			28	71	1.0
1311	83	16			0.994512
1313	83	16			0.994512
1316	83		16		0.994512
1318		16	83		0.994512
1321			83	16	0.994512
1326		16	83		0.994512
1330		16		83	0.994512
1331	16		83		0.994512
1333	83	16			0.994512
1395	75	25			0.996473
1431		75		25	0.996473
1443	75		25		0.996473
1453	20			80	0.995493
1454	20		80		0.995493
1457		81		18	0.999994
1613		71		28	1.0
1632	16	83			0.994512
1640			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain