SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene561

Length: 1006 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene561 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Expressed protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	31%
Blast2go	uncharacterized protein	-	-	4.38987e-31	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2R2Z3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 126 aas, your sequence is shorter than subject: 335 - 471

Fln protein: VVTLAVTQCIIH*TTALWAGLGVWH*RSIKTKIILRYLSGRAGK*NPKLSRNPAPRVSGNKMVELKCD*KEPLSYNSILDERKRLADRTQLEWALKAAKSEAKGMSSQDSQMEAVITEAVRSRSSYFKKQSDSLTFEGVRRLLEDDLGLETFTLDAYKQLIKKLLQENFDSSEEEDASGNLTENEIEAEDSKLEKRSRSSEPSKQKMQTEYNGVLKEQEDELLKKLAVEDTDIEKPDQDQTGRMGLDKVDTEVKDKKELSVEVNEAVIREAFSKRASYLRAEIESITMGGVRRLLEQDLKLEKKALDSHKALIEKLVDQVLASPIDAPDDVKETK

Protein Length: 336

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTATAATTCACTGAACTACCGCGCTCTGGGCAGGACTAGGGGTTTGGCATTGACGTTCCATTAAAACAAAAATAATTCTAAGATACTTGTCAGGAAGAGCGGGCAAGTAAAACCCCAAACTTTCAAGAAACCCAGCTCCCAGGGTTTCCGGAAATAAAATGGTGGAACTGAAATGCGATTAAAAGGAGCCCCTTTCATACAATTCAATACTGGACGAGCGGAAGAGGCTGGCAGACAGAACACAGTTGGAGTGGGCATTGAAAGCAGCAAAGAGCGAAGCGAAAGGCATGTCTAGCCAGGATTCTCAGATGGAGGCGGTCATCACTGAAGCTGTGCGCTCTCGGTCATCCTACTTCAAGAAACAATCCGATTCTTTGACCTTTGAAGGTGTTCGCCGACTCTTGGAAGATGATCTGGGACTGGAAACTTTCACGTTGGATGCATACAAGCAATTGATTAAGAAGCTTTTACAAGAGAACTTCGATAGTTCGGAGGAGGAGGATGCCTCTGGGAATCTAACAGAAAATGAAATTGAAGCTGAGGACTCAAAATTAGAAAAAAGGTCCAGAAGTTCAGAGCCTTCAAAACAAAAAATGCAAACTGAATATAATGGCGTATTAAAGGAGCAAGAGGATGAACTGCTGAAAAAACTAGCAGTTGAGGACACTGATATTGAGAAACCAGACCAGGACCAAACAGGTCGAATGGGTCTGGATAAAGTTGACACTGAGGTCAAAGACAAAAAAGAGTTGTCTGTTGAGGTGAATGAGGCAGTAATAAGAGAAGCTTTTTCGAAGAGAGCTTCTTATCTGCGAGCTGAAATAGAATCTATCACTATGGGAGGTGTTCGTCGACTTCTTGAACAAGACCTTAAACTTGAGAAGAAAGCACTTGATTCCCATAAAGCTTTGATTGAAAAGCTTGTTGATCAGGTGCTTGCTAGTCCAATTGATGCACCTGATGATGTTAAAGAAACAAAA

Fln Alignment:

Contig561___KGMSSQDSQMEAVITEAVRSRSSYFKKQSDSLTFEGVRRLLEDDLGLETFTLDAYKQLIKKLLQENFDSSEEEDASGNLTENEIEAEDSKLEKRSRSSEPSKQKMQTEYNGVXXXXXXXXXXXLAVEDTDIEKPDQDQTGR
Q2R2Z3_____________KDHSSGSDISEATIKNAIVKRASYFRENSETITLQGVRRTLEEDLKLQKKALDAYKSFISTEL----DNILQEPANGTKKTSKTESHKDSGQKTSKNSKRARQDSDTS----------------EINDSHCERGDSDEDAR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
665	11		88		0.999952
786	90			10	0.90298
787	90	10			0.90298
788	90	10			0.90298
790	10		90		0.90298
791		10	90		0.90298
805	10		90		0.90298
890		33	66		1.0
891	66	33			1.0
893	66	33			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
479	490	TCC TCC TCC TCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain