SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene554

Length: 1585 nt

Origin of reads: Inia v1 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene554

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gb\|AAA33647.1\| ATP synthase delta subunit [Pisum sativum]	-	-	5.0e-38	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	68%
Blast2go	proton transport	GO:0015992	Biological Process	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%
Blast2go	membrane	GO:0016020	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U9

Fln msg:

Fln protein: MDASMQSMSAVNLHRAPCPRALQFQQISQKLPFVVLEHNSYSTRLVATLHFTISKRGLCTASKSNFTHNPLVPKTRIKSNVRDCRFAYIVMQGTAAGGYAAALVEIAQSNKMLETINEDVCKLSQLLQNQELHDFLVKPVIQPEKKKSMLKAVADDAQFQPCTLNFLDFLVDKKRIDIIMDIMEEFQSIYTELTDTQVAVVTSAMKLGNHQMAQIARKIQRLSGASNVRLKNAIDPSLIAGFIISYEKDGKHMIDMSVKSKLEKLAAQIDSAEKIGVCNIC*

Protein Length: 283

Fln nts: ATACGAGGTCATATCCTCTTTCACGTTTCGCTACATATATTAGCCCTCGGCCATTAGTATTTCCCCGTCTCTTACCTTCATGTGATTGGGTATGCTCCTCCCTTTCTTTCTACTGGAATTAACCGTTTTGACTCAGTAATCCGAAGCTTCAATTCCATGGTTCATCTCCCCCTTGAACTGGATTATCTACAGCAGAACTAAG_-_ATGGATGCATCAATGCAGTCTATGTCAGCAGTAAATCTGCACCGAGCTCCCTGTCCTCGAGCTCTGCAGTTTCAGCAGATTTCCCAAAAGCTGCCTTTTGTTGTTTTGGAACATAACTCGTACTCAACTAGGTTGGTTGCAACCTTGCATTTCACTATCTCGAAGAGAGGGCTTTGCACTGCCTCGAAGAGCAATTTCACTCACAATCCTCTGGTTCCAAAGACTCGGATAAAATCAAATGTTCGTGATTGTAGATTTGCTTATATTGTTATGCAAGGTACTGCTGCAGGAGGATATGCTGCAGCTCTAGTGGAAATTGCACAATCGAATAAAATGCTGGAGACAATCAATGAAGATGTCTGCAAACTTTCGCAGCTGTTGCAGAACCAGGAACTACATGATTTCCTTGTCAAACCCGTCATTCAACCAGAGAAGAAGAAGAGTATGCTCAAGGCTGTTGCCGATGATGCTCAATTTCAGCCCTGCACACTTAATTTCTTGGATTTTCTTGTTGACAAGAAAAGGATTGACATAATCATGGATATCATGGAGGAATTCCAATCAATTTATACTGAATTGACAGATACTCAAGTTGCAGTTGTTACTTCTGCCATGAAGCTTGGGAACCACCAGATGGCGCAGATAGCTAGGAAGATCCAGAGATTAAGTGGTGCTAGTAATGTGAGACTAAAGAATGCTATTGACCCATCTTTGATTGCAGGTTTCATTATCAGCTATGAGAAAGATGGCAAGCACATGATAGACATGAGTGTGAAAAGCAAATTGGAGAAGTTAGCAGCTCAAATTGACTCTGCAGAAAAAATTGGAGTATGTAATATATGTTAA___AGCATTCTGAATACAAGCAATCAAGTTCTTTGTAGGCAAAGATCTTCCTTTCTTCCAGTAGTGAGTAGTAATGCCTTGCAAGAATATCTTTGAAATGTTTGAGAAATGCTGGCCTCGGTCCTTCACTCCTCTCCACTGGGATCTTCTCTAATGATTGTAGGGCTTGATATTCACTTCCCAAGACTCGTATTGGATATCAAAGTGGAAGGATTTCTTCTATAATTTTCAGTAGTAGCTGAGGTTCTAACTGAAGGGCAGAAGGTAAGAGTTGAAAGTAATGTATGGAGAGCAATGGGTCAGTGCTAAATTCTAAGGATGAGTAGTCAACTGAGCGAATTTTGATTAATCTGAAGTTCATGTTGAATTATAACTAATTGCAATCTATTTATGTAAAAATAAGTATGTTGAATGACAGATTGCAAGGGTTGTTGGATAACAGAATAATGAAGTGATAATGCAGTGTTGAACTTTGCGTTCAAATGCATTTGATGTATGATTATTGTTGTCGAAATTGAACAATTCAACCTTTTGTAGCTC

Fln Alignment:

Contig554___MDASMQSMSAVNLHRAPCPRALQFQQISQKLPFVVLEHNSYSTRLVATLHFTISKRGLCTASKSNFTHNPL---VPKTRIKSNVRDCRFAYIVMQGTAAGGYAAALVEIAQSNKMLETINEDVCKLSQLLQNQELHDFLVKPVIQPEKKKSMLKAVADDAQFQPCTLNFLDFLVDKKRXXXXXXXXXXFQSIYTELTDTQVAVVTSAMKLGNHQMAQIARKIQRLSGASNVRLKNAIDPSLIAGFIISYEKDGKHMIDMSVKSKLEKLAAQIDSAEKIGVCNI
D5A7U9_____________MDTLTQSLATLNVHSRPPAQVLQSREPVQLLPAAILSPRSRSSRPFAPAHLTISKKGIEAAFKNSYTLDALASRIPQANAESPVRR---AVVVMRESAAGGYAAALLQFAQANNMLEMINGDMEKLSHLLKNRELYDFLINPITENGKKKSILKSIADDAKFQTYTLNFLNLLISKQKIGIVNNILKEFESLYNELTDTQVAFVSSALKLENRELAQIAKKIQSLTGARNVKLKCIIDSSLIAGFVIRFGKDASRIIDMSVKSRLELLSAPINSTEKVGAFGI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1446	75			12	0.975346
1447	12			87	0.992554
1466	90		10		0.90298
1468		10		90	0.90298
1530	80		20		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
633	644	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain