SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene552

Length: 1028 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene552 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Noc2p family protein [Arabidopsis thaliana] dbj\|BAE98878.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE79394.1\| Noc2p family protein [Arabidopsis thaliana]	-	-	43%
FL-Next	sp=Nucleolar complex protein 2 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	nucleolar complex protein 2 homolog	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	69%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Uncharacterised protein family UPF0120	IPR005343	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZPV5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 273 aas, your sequence is shorter than subject: 342 - 779

Fln protein: RRDLGCHSKLLELHVTMGMGKI*LSFNFDNCKQQYF*HNHDISSW*D*WYIQEIAANASVRWKVR*AILEMKDTPRWKDLEGLIKSYFVSTLYVLSQMTDNELISFTLQRLRCSIIFLAAFPVYLRKILKVVLHFWGSGRGPLSVVSFLFIQDMVLHLGSDCFDYCLKSIYKIFAVNCKLVNTANLQQIELLKNCVVELYGVDLSNAYQHVFTFINQLGMVLRHALTSNTKEALEKAYSWQYINCLELWVKFLCANASNIDFQPLSYPMAQIVIGVARLVPTACYAPLKLRCTKMLNTLASARGIFIPVASLLFDMLECKELDRTPTGGYGKAFDFSTALKV

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCTTTTAGAACTGCATGTCACTATGGGGATGGGGAAGATATGACTCTCTTTCAATTTTGACAATTGTAAACAGCAATACTTTTAACACAATCATGATATCAGTTCTTGGTGAGATTGATGGTATATTCAGGAAATTGCTGCGAATGCCTCTGTCAGGTGGAAAGTAAGGTAGGCAATTTTAGAAATGAAAGACACGCCACGATGGAAGGACCTTGAGGGTCTCATCAAGTCATATTTTGTCAGCACTCTTTATGTTCTGAGCCAAATGACTGATAATGAATTGATTTCATTTACACTTCAACGCTTAAGATGTTCAATTATTTTTTTGGCAGCATTTCCTGTTTATTTACGCAAAATTTTAAAGGTTGTACTTCACTTCTGGGGTAGTGGCAGAGGACCACTCTCTGTTGTATCTTTCTTATTTATTCAAGATATGGTTCTTCATTTGGGTTCTGATTGTTTTGACTATTGCCTGAAAAGTATCTACAAGATTTTTGCAGTAAACTGCAAACTTGTCAACACAGCAAACCTTCAACAGATTGAGTTACTAAAGAACTGTGTTGTGGAACTCTATGGAGTGGACTTATCAAATGCTTATCAGCATGTATTTACATTCATTAATCAGTTGGGAATGGTTTTACGACATGCTCTCACATCAAATACCAAGGAAGCACTGGAGAAGGCTTACAGCTGGCAATATATTAATTGCCTTGAACTTTGGGTTAAATTTCTTTGTGCCAATGCCAGCAATATTGACTTCCAGCCTCTTTCCTATCCGATGGCTCAGATTGTAATTGGAGTTGCTCGTTTGGTGCCTACTGCATGCTATGCCCCTTTGAAGCTGCGATGTACGAAAATGTTAAACACACTTGCTTCTGCTAGAGGAATTTTTATTCCTGTGGCTTCTTTACTTTTTGATATGCTAGAGTGTAAAGAACTGGACAGGACACCAACTGGAGGATATGGGAAAGCTTTTGACTTTTCAACGGCATTGAAGGTACC

Fln Alignment:

Contig552___ILEMKDTPRWKDLEGLIKSYFVSTLYVLSQMTDNELISFTLQRLRCSIIFLAAFPVYLRKILKVVLHFWGSGRGPLSVVSFLFIQDMVLHLGSDCFDYCLKSIYKIFAVNCKLVNTANLQQIELLKNCVVELYGVDLSNAYQHVFTFINQLGMVLRHALTSNTKEALEKAYSWQYINCLELWVKFLCANASNIDFQPLSYPMAQIVIGVARLVPTACYAPLKLRCTKMLNTLASARGIFIPVASLLFDMLECKELDRTPTGGYGKAFDFSTALKV
Q9ZPV5_____________ILELTNTRPWKNYNHLVKSYLGNSLHVLNQMTDTEMITFTLRRLKHSSVFLAAFPSLLRKYIKVALHFWGTGSGALPVVSLLFLRDLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAFVFIRQLAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQIITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEMKELNRPPTGGVGKGVDLRTLLKV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
479		83		16	0.994512
674		66		33	0.997452
782	50		50		1.0
838	33	16			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain