SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene544

Length: 858 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene544

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxiredoxin Q, chloroplastic n=4 Tax=Populus RepID=PRXQ_POPJC	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	peroxiredoxin q	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine metabolism	00360		82%
Blast2go	Methane metabolism	00680		82%
Blast2go	Phenylpropanoid biosynthesis	00940		82%
Blast2go	Biosynthesis of phenylpropanoids	01061		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Biosynthesis of secondary metabolites	01110		82%
Blast2go	Peroxiredoxin.	EC:1.11.1.15	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	82%
Blast2go	peroxiredoxin activity	GO:0051920	Molecular Function	82%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
176	90		10		0.90298
241	90		10		0.90298
327	88			11	0.923564
417		83		16	0.994512
471		31	68		1.0
748	66	33			0.997452
751		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain