SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene539

Length: 1071 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene539 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide deformylase n=1 Tax=Populus trichocarpa RepID=B9GKW9_POPTR	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	peptide deformylase 1a	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Formylmethionine deformylase.	EC:3.5.1.31	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Cysteine and methionine metabolism	00270		81%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		81%
Blast2go	Peptide deformylase.	EC:3.5.1.88	-	81%

Source	GOs	Term	Type	Identity
Blast2go	co-translational protein modification	GO:0043686	Biological Process	81%
Blast2go	translation	GO:0006412	Biological Process	81%
Blast2go	formylmethionine deformylase activity	GO:0008463	Molecular Function	81%
Blast2go	iron ion binding	GO:0005506	Molecular Function	81%
Blast2go	peptide deformylase activity	GO:0042586	Molecular Function	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Formylmethionine deformylase	IPR000181	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQN9

Fln msg:

Fln protein: MGCGLASSPTIRTNATTAILASLNSPGGALGSPRYSPNRLACIATTTLVSTSSGIHSRLLSSFCHLINVDGYPKYGLLGSKPMHRAHLRTSTVSLAGGFFGFGKKKIALPEIVHAGDPVLHECAEEVALDEIGSERIQKIIDNMIAVMWDAPGCGLAAPQIGVPLQMIVLEDKEEYIRFTLKEEAEAQERHPFDLLIIINPKLKSKGTKTAKFFEGCLSVNGFRGLVERYLEVEVTGFGRDGLPIKVNATGWKARILQHECDHLAGLLYVDKLIPRTFRTAENLRLPLASGCPKPGID*

Protein Length: 300

Fln nts: ATGGGGAACCAGGATTGCTACGGATGCGCTGCTATTGCGAGTGAAG_-_ATGGGTTGTGGATTGGCATCATCTCCCACCATTCGAACCAATGCTACAACTGCCATTTTAGCTTCTCTGAACTCCCCAGGCGGGGCTTTGGGCAGTCCCAGGTACAGCCCAAATCGGCTGGCTTGCATTGCAACAACCACACTGGTTTCTACCTCTTCGGGAATTCACAGTAGACTCTTATCCAGCTTCTGTCATTTGATAAATGTTGATGGGTATCCGAAATATGGATTGTTGGGCTCAAAACCGATGCACAGGGCACATCTGAGGACATCGACAGTGTCTCTGGCAGGTGGGTTCTTTGGATTTGGGAAGAAGAAGATTGCTTTACCGGAGATAGTGCACGCGGGCGATCCCGTGCTACATGAATGTGCAGAAGAAGTAGCATTGGATGAAATTGGCAGCGAGAGGATTCAGAAGATTATAGATAATATGATTGCAGTCATGTGGGATGCACCTGGCTGTGGGCTTGCTGCCCCACAAATCGGAGTACCATTGCAGATGATTGTTCTAGAAGACAAGGAAGAATATATCAGGTTTACGCTAAAGGAGGAAGCTGAAGCTCAGGAACGCCATCCGTTTGATCTTTTGATAATAATAAATCCTAAACTTAAATCAAAGGGCACAAAGACTGCAAAATTTTTTGAAGGATGTCTCAGTGTGAATGGATTTCGTGGACTAGTTGAAAGATATTTGGAGGTTGAAGTAACCGGTTTCGGGCGTGATGGACTTCCAATAAAAGTAAATGCTACTGGTTGGAAGGCAAGGATATTGCAGCATGAATGTGATCATCTTGCTGGTCTGCTTTATGTTGACAAACTGATCCCTAGAACATTCAGAACGGCGGAGAACCTTAGATTGCCTCTTGCAAGCGGTTGTCCCAAGCCAGGCATCGATTAA___GTTCATTTGAAAATTTATTCCTACCCAGTATTACCAATTGCTCATTTTGATTTTGGATAATTTTCTTTCCCTTCTGAAACAGATGCTTTCACTAGCGTTTCTGAAACAGATGCTTTCACTAGCGTTAG

Fln Alignment:

Contig539___MGCGLASSPTIRTNATTAILASLNSPGGALGSPRYSPNRLACIATTTLVSTSSGIHSRLLSSFCHLINVDGYPKYGLLGSKPMHRAHLRTSTVSLAXXXXXXXXXKIA-------LPEIVHAGDPVLHECAEEVALDEIGSERIQKIIDNMIAVMWDAPGCGLAAPQIGVPLQMIVLEDKEEYIRFTLKEEAEAQERHPFDLLIIINPKLKSKGTKTAKFFEGCLSVNGFRGLVERYLEVEVTGFGRDGLPIKVNATGWKARILQHECDHLAGLLYVDKLIPRTFRTAENLRLPLASGCPKPGID
A9NQN9_____________MGCGLPSSPTFGTNASTAILASLNFSVGALDSHRYSPNRLACNATTTLVSTSVGIHSRLLSTSCHLLNVDGCRKYGLLGTKPMQRGHQRTSTVALAGGFFGFGKKKTGFGKKKTVLPEIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVLEDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERHLEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIPRTFRTVENFRLPLATGCPKPGVD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
366		88	11		0.999952
390	16			83	0.999991
488	10			90	0.90298
489	90		10		0.90298
490	90			10	0.90298
491	90		10		0.90298
492	10	90			0.90298
507		90	10		0.90298
508	10			90	0.90298
509		10		90	0.90298
516		11		88	0.923564
518	11		88		0.923564
519	88			11	0.923564
717		87		12	0.992554
718		87	12		0.992554
719		87	12		0.992554
721	87			12	0.992554
722	87			12	0.992554
724		87	12		0.992554
725		87	12		0.992554
726	87		12		0.992554
732		87	12		0.992554
733	12	87			0.992554
736		87	12		0.992554
737	12	87			0.992554
827			16	83	0.994512
915			14	85	0.993533
985	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain