SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene537

Length: 2262 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene537
CTAGACTTGGACAAGAGTTGTTGGATCTCCACCACCTCAAGTGGATGCCATTGCAAGCCAGATTCCAATGCTGTTAATAATGAAATCTGTTTGGACAATCTTTCTATTCGAGAACTCCATGAGGCCTTCCGGAGGACATTTGGGCGTGAAACTTCTGTTAAGGACAAACAATGGCTCAAACGTCGTATTTCGATGGGATTGAATAGCCCTCGTGATGTAGCCAATAATAATGCCGTATTGGAAAAGAAACCATCTGGTCATAAGAAACTAGAAAAAGATTTCAGCTTTGAAAGCAGGCATATTATTGATCAACCTGTGCACTCATTGCCAACCATACAACCCATCAACACTAAAGTGGCAGCTGGTAGTGCTTTTGAGTCGTTTGGGAGAAAACAGCCTCGTGGGAAGATTGCTTCGACTACCTCTTTCATGGAAGTAGAGAAAGTAACAAATGGATTTGATGATGAATTTGTGGGTCATGGGATGAGAGCAGGAAAGAGATTGCGGAAGCCAAAGGCAGAGTATGGAGAAAATTTAGAAGTTGTAGATGCAGAGAGGATGGCTGGAAAGACAGTGCGAAGACCAAAATCAGAGTATTTAGACTATGATGAAGATTTTGATACAGAGAAAATAGCAGGGAAAAGAGTTCGAAAACCAAAAGTAGAGTATGGAGAGTATGATGAAGTTTTTTGTTCAGAGAAGACAGCAGGGAAAAGGATGCGGAAACCTACTCGAAGATACATTGAAGAACTTTCAGAAGAAGAGCCGAGAGCATATAGTGGAAGGACAGTTCCTGCTGTCAGAGATTCAGGTCATGGGCACTCACCACTAAAGTCTCGTGTCAGGCCTCCATACTTGAATGGAGTTGAGGGAATGGCATTGGTAACGAGGCACGACTCTCTTGGTGGGTCTGGGATTCAAGTTCCATTTGTTTCTCGAGTGCGCAGGGGACGCCCAAGGAAAAATTGCACATCTCTTCTGAAATATAATCCAAGTGGAATGGCTGCCAAACTTGTAAAGAAAGCTTTATCAGTGCGAGCTGCACGTTATGATGGGGATGGCGCAGATATGAAGTGGAGAACTAGGGTTCCGTCTGAATCTGTTGAGCAAACTGTCGATGAGAACAGCCAAAATGACGAAAATATGCTGCTGCCAGTGAGCACAGAGGATCAATCCTTTTCTGATCCTCTTGATTATGATATGGAAGAGGACAATTCAGATGACTATGTTGCAACTGTTCCAACAGCAAAAGGTGGGACTCGAAGGAAACATCACCGTGCCTGGACTTTGGGAGAAGTGATGAAACTGGTAGAGGGTGTTTCAAGGTGTGGTGCTGGAAGGTGGTCTGAAATTAAAAGACTTGCATTTTCAGCTTATGGACATCGCACTTCAGTCGACCTTAAGGATAAGTGGCGAAATTTGCTTAGAGCTAGCTATGCCCAATTGCAGTCAAACAAAGAGGGTAGATCGCAGAGAAAGCATGCATCAGTACCTATTCCTGCCCCAATTTTAGTTCGTGTAAGAGAACTAGCTGCTACGCAGTCACGATCTCTTGGCACCCCTAATTGTAGTTCAGTGAGTCGCAGCGGGAGAACTGTACATAAGAAGCTACCTGTGTAAATGTAAATTGTGTATGAAAAGATGACCTATGTGAATAAACTATGGACTCTTTAAACTTATCCAGGTTGGGAGGTTCCCTCATGCAAAATAAGCGATGTTGAAGCATGCATTGCTCTAATTCCTTGCCTAAGCTCTGTTATTTGAAAGTGTCTACCCATGTTATATATATAGGCCTCTACTGGAAACACTGTTTGGGAGAGTTGGGTTTGGTGAAGGATTTAATCAATGCATGAGTTATGGCGGGAGGAATGTTTAAGATAGGTTGTGACAACATTACAAGGTGTCATGAGATGCTCCTCAAGTCAGACGGTGTATTGGCAACCGCAAGGAAATATAATGCAAGTTTGCTTACGCCTTCTACGTTAGATGGACTCTTGATACACGGAGATAAAGTTTGTATAGTAGTTAGAGGAAAGAAGTACTTTTCATAATCCATCTTGAATCTATGTCAGCCAGTTACCAGTTATATCTATAGTTTCAGAGACTTCTGTCCCACAATTTTCTGTTGAGCAAACCCGAAAAGGGCTGGTATAGATTTCATCTGTATTTCAGTTTGATGTTTTGTTTTATACGCTCAAAGATTAACTGTTTCATTGGCCGGCATCTTTATAATTAACCATTACAGGCAGTATCTGTTTTAAT

Ace file of the UniGene sp_v2.0_unigene537 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MYB transcription factor-like [Oryza sativa Japonica Group] dbj\|BAD17383.1\| MYB transcription factor-like [Oryza sativa Japonica Group]	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	myb family transcription factor	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	56%
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015706	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A978

Fln msg:

Fln protein: MHCSNSLPKLCYLKVSTHVIYIGLYWKHCLGELGLVKDLINA*

Protein Length: 44

Fln nts: CTAGACTTGGACAAGAGTTGTTGGATCTCCACCACCTCAAGTGGATGCCATTGCAAGCCAGATTCCAATGCTGTTAATAATGAAATCTGTTTGGACAATCTTTCTATTCGAGAACTCCATGAGGCCTTCCGGAGGACATTTGGGCGTGAAACTTCTGTTAAGGACAAACAATGGCTCAAACGTCGTATTTCGATGGGATTGAATAGCCCTCGTGATGTAGCCAATAATAATGCCGTATTGGAAAAGAAACCATCTGGTCATAAGAAACTAGAAAAAGATTTCAGCTTTGAAAGCAGGCATATTATTGATCAACCTGTGCACTCATTGCCAACCATACAACCCATCAACACTAAAGTGGCAGCTGGTAGTGCTTTTGAGTCGTTTGGGAGAAAACAGCCTCGTGGGAAGATTGCTTCGACTACCTCTTTCATGGAAGTAGAGAAAGTAACAAATGGATTTGATGATGAATTTGTGGGTCATGGGATGAGAGCAGGAAAGAGATTGCGGAAGCCAAAGGCAGAGTATGGAGAAAATTTAGAAGTTGTAGATGCAGAGAGGATGGCTGGAAAGACAGTGCGAAGACCAAAATCAGAGTATTTAGACTATGATGAAGATTTTGATACAGAGAAAATAGCAGGGAAAAGAGTTCGAAAACCAAAAGTAGAGTATGGAGAGTATGATGAAGTTTTTTGTTCAGAGAAGACAGCAGGGAAAAGGATGCGGAAACCTACTCGAAGATACATTGAAGAACTTTCAGAAGAAGAGCCGAGAGCATATAGTGGAAGGACAGTTCCTGCTGTCAGAGATTCAGGTCATGGGCACTCACCACTAAAGTCTCGTGTCAGGCCTCCATACTTGAATGGAGTTGAGGGAATGGCATTGGTAACGAGGCACGACTCTCTTGGTGGGTCTGGGATTCAAGTTCCATTTGTTTCTCGAGTGCGCAGGGGACGCCCAAGGAAAAATTGCACATCTCTTCTGAAATATAATCCAAGTGGAATGGCTGCCAAACTTGTAAAGAAAGCTTTATCAGTGCGAGCTGCACGTTATGATGGGGATGGCGCAGATATGAAGTGGAGAACTAGGGTTCCGTCTGAATCTGTTGAGCAAACTGTCGATGAGAACAGCCAAAATGACGAAAATATGCTGCTGCCAGTGAGCACAGAGGATCAATCCTTTTCTGATCCTCTTGATTATGATATGGAAGAGGACAATTCAGATGACTATGTTGCAACTGTTCCAACAGCAAAAGGTGGGACTCGAAGGAAACATCACCGTGCCTGGACTTTGGGAGAAGTGATGAAACTGGTAGAGGGTGTTTCAAGGTGTGGTGCTGGAAGGTGGTCTGAAATTAAAAGACTTGCATTTTCAGCTTATGGACATCGCACTTCAGTCGACCTTAAGGATAAGTGGCGAAATTTGCTTAGAGCTAGCTATGCCCAATTGCAGTCAAACAAAGAGGGTAGATCGCAGAGAAAGCATGCATCAGTACCTATTCCTGCCCCAATTTTAGTTCGTGTAAGAGAACTAGCTGCTACGCAGTCACGATCTCTTGGCACCCCTAATTGTAGTTCAGTGAGTCGCAGCGGGAGAACTGTACATAAGAAGCTACCTGTGTAAATGTAAATTGTGTATGAAAAGATGACCTATGTGAATAAACTATGGACTCTTTAAACTTATCCAGGTTGGGAGGTTCCCTCATGCAAAATAAGCGATGTTGAAGC_-_ATGCATTGCTCTAATTCCTTGCCTAAGCTCTGTTATTTGAAAGTGTCTACCCATGTTATATATATAGGCCTCTACTGGAAACACTGTTTGGGAGAGTTGGGTTTGGTGAAGGATTTAATCAATGCATGA___GTTATGGCGGGAGGAATGTTTAAGATAGGTTGTGACAACATTACAAGGTGTCATGAGATGCTCCTCAAGTCAGACGGTGTATTGGCAACCGCAAGGAAATATAATGCAAGTTTGCTTACGCCTTCTACGTTAGATGGACTCTTGATACACGGAGATAAAGTTTGTATAGTAGTTAGAGGAAAGAAGTACTTTTCATAATCCATCTTGAATCTATGTCAGCCAGTTACCAGTTATATCTATAGTTTCAGAGACTTCTGTCCCACAATTTTCTGTTGAGCAAACCCGAAAAGGGCTGGTATAGATTTCATCTGTATTTCAGTTTGATGTTTTGTTTTATACGCTCAAAGATTAACTGTTTCATTGGCCGGCATCTTTATAATTAACCATTACAGGCAGTATCTGTTTTAAT

Fln Alignment:

Contig537___MHCSNSLPKLCYLKV----STHVIYIGLYWKHCLGELGLVKDLIN
D5A978_____________MHCSNSLPKLCYLEVLPKQKTYECYIGLYWKNCLGELGLVKDLIN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1712	16		83		0.994512
1716		83		16	0.994512
1819		25		75	0.996473
1820		25		75	0.996473
2086			88	11	0.923564
2166			33	66	1.0
2169	33			66	1.0
2173	66		33		1.0
2174	66	33			1.0
2179			33	66	1.0
2180			33	66	1.0
2184		33		66	1.0
2185			33	66	1.0
2187		33		66	1.0
2188			33	66	1.0
2202		25	25	50	0.995533
2203	25	50			0.995533
2205			75	25	0.996473
2206	33		66		0.997452
2208	33			66	0.997452
2210			33	66	0.997452
2211		33	66		0.997452
2215			33	66	0.997452
2217			66	33	0.997452
2222		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain