SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene532

Length: 2439 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene532
GGGGCCTTGTTCAGTTTGATCCAGAGAAGCGATGGACACCTGGCCAGGCTGCACGGCATCCTTTTGTGACTGAAGAAGCCTTTACTTGTCCTTACACGCCTGCCCCAGAAACACCTCGCAAACCAGTCAGTCAGATAGTTACAGTGGATCACAATCCAGGATCAGGTCATTGGTTTGGTGCTGGGCTTTCTCCCCAGGTTGTGAACATGAACAAAGGCATTCACTACAATAGCCCACAGTATCAGATGGCTCCTTTTTCCTATGCTAGTAGTTATGGTAGCCTTGGAAGCCATGGTAGTTATGGGGATGGTGTTGGTCTTGGGAGTAGTTTTGGGAGCTATGGAGACACTAGTAATGCCTATATGGGATACTTCCCAATCACACCTTCTGGACTTAATATACAGAGTCATGGTACTCCTGGCGGTACTGCTGTTGGAGCAAGTCCTGACACGAGGTGGAGGTTCTCACAAGCTCCTCCTGGGCATGCTCTTGGTATAAGCCCCTCTAGTGGCATGTTGAGGCCCATGTCCTTGGGAGCTAGTCCTTCTCAGTTTACTCCTCCAAGCTCTCAGATACAGGTTTCTTCTGGATCTCCTATAGGTTCGCCTGGCAGGTATGGACCAACCTCACCTGCCAGAAATAGTATTCATGTTGCTGGTTTAGGAAAGGCAGCTGCAGTCGGCCAGTATCACAAACGAAGGGGTTTCAGTATATCTGGCAGTTCGCATTTGCCACCCCAGGATAATATACCACAGCATTGGCAAGGTCACCAAAACAACGTGGGAGTCAATATGGATGTGGGTGCTGGTGGCATTGTAGATGGAAATACCCGAGGTGGTTATCCGGGCTCCCCTCGCAACAGTCAAGCAACTTCTCATCTTCAACCTTGGAGGCAAAGGGGTGGAAATGGTGTCACTACAGCGTTGATGGTATCAAATCAGCAAAAAAATTCCAGTGTATATGCGTCTGGTTTATATGGGGAGTCTCTGACTTCAATGGAGACATGCTCGGAGGGATTGGAAAGCAGTTCACCACCACCAGATCCTGGAGATTGGGATCCAAATTACAGTGATGAACTTCTTTTGCAAGAGGACGGGTCTGAGATAATTTCACCAAAGTCTGGATTTAGTGGAGTAGTACGATCAAGTCAAGGATCAGGTTCTGCTATTTCATCTGGTGCTGGAAGTGGTAGATCCGGTCGCAGCTATCCCCAGTCTCAAGCAGTTTCAAGCAGTAACCCAAACGTTCAAAGACTAAATGGAGTTCAGGGATATGTTAATCTAGAAGGCAGCCCACCATCAGCTCATGGAATTCAGCCAGGTTATAGTCGATCAATGTCAAAACCTTTGCATCACGGCGCATATTCAACTCAGCAGAGTCGATTGGGGCCACAGTCATCTCAGATCTTCCAGCAACATTTCCAGTACCACTATCATCCTCAATCAATGCTAAATCCTGATCAGCAGTTGATTCCTAATGCATTAGGGCATCTGCACATACATCAATCAAGTAATGCAGGACACAGTCAGCTTTCCAATGGAGGAGGGGGGAGGGGCCCTGGTTATTCAGTATCCTCCACTCAGATAGATACCCGAGCAGAACACGCTCGGGCTTCTGGATTTGGAAGTAGGATAAGCATTGGGGCACCTGGTCATGCAAACTATCCTCAAGATCATATTTTGGAGAGCACCTTACAATGCTTGCATGGGATTCCTCATACTCAAGGACAAGGCTCTCTAACAAATGAAATATCTTGGGGTACTCAGGGTCGAAGGACTGGTCATCCCTTCACCACTATTCCACCATCTAATGGCAGAAGAGATTACAGGAGGATTGGTTGATTTTAAAAGCTGGCTTATTTCTGTTTTTCAGGAGGATATCAATATTCTTTATTGGATCCGTTCATGCATTCCAGTTCTGTATAAGATGCTAGAAATGGTATTCCTCAAGTTTGTATTTCTTAAGATGTAATGGTCTGGGCATGTTTGCCAACCAAAACATATTTCTTTGTTTAGTGCCCCCCCAAAGAAATTGTCAATTGGATAGGCTGACTTGAGCTTTGAGAGTAATAGTTATAACTTGTGACTTACTCATAAGTAGCCAGTCCCTTAAGATTACCAATGACATGATTGCTGGCGGTGCTACACATGTTACAAGCAAGAAAATTTCTCTCCTTTCATAAGATATTTCGTGCCCTTGTCTTGTACATCTGCCATACATATGAATTTCCATCTCTACTTAATACTAAATGGTAGGTTGATTTAAATTGCTGCAAAGTTAAAACTGACAATCTCATTATTTAGATTATGCTGTACCTATGATCTTCTGTTCACTGCTGTTTCTTTTCTGTTTCATTCAATCTGTTAATATGTGACATTTCAATGTAAATCTATTTCAATTATCGTTTTAGTTTGAGACATTATATTGCGGTAGTCAAGC

Ace file of the UniGene sp_v2.0_unigene532 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SDF7_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	yak1-like protein 1	-	-	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	58%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	58%
Blast2go	ATP binding	GO:0005524	Molecular Function	58%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	58%
Blast2go	cytosol	GO:0005829	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR87

Fln msg: your sequence is shorter than subject: 613 - 1070

Fln protein: GLVQFDPEKRWTPGQAARHPFVTEEAFTCPYTPAPETPRKPVSQIVTVDHNPGSGHWFGAGLSPQVVNMNKGIHYNSPQYQMAPFSYASSYGSLGSHGSYGDGVGLGSSFGSYGDTSNAYMGYFPITPSGLNIQSHGTPGGTAVGASPDTRWRFSQAPPGHALGISPSSGMLRPMSLGASPSQFTPPSSQIQVSSGSPIGSPGRYGPTSPARNSIHVAGLGKAAAVGQYHKRRGFSISGSSHLPPQDNIPQHWQGHQNNVGVNMDVGAGGIVDGNTRGGYPGSPRNSQATSHLQPWRQRGGNGVTTALMVSNQQKNSSVYASGLYGESLTSMETCSEGLESSSPPPDPGDWDPNYSDELLLQEDGSEIISPKSGFSGVVRSSQGSGSAISSGAGSGRSGRSYPQSQAVSSSNPNVQRLNGVQGYVNLEGSPPSAHGIQPGYSRSMSKPLHHGAYSTQQSRLGPQSSQIFQQHFQYHYHPQSMLNPDQQLIPNALGHLHIHQSSNAGHSQLSNGGGGRGPGYSVSSTQIDTRAEHARASGFGSRISIGAPGHANYPQDHILESTLQCLHGIPHTQGQGSLTNEISWGTQGRRTGHPFTTIPPSNGRRDYRRIG*

Protein Length: 614

Fln nts: GGGGCCTTGTTCAGTTTGATCCAGAGAAGCGATGGACACCTGGCCAGGCTGCACGGCATCCTTTTGTGACTGAAGAAGCCTTTACTTGTCCTTACACGCCTGCCCCAGAAACACCTCGCAAACCAGTCAGTCAGATAGTTACAGTGGATCACAATCCAGGATCAGGTCATTGGTTTGGTGCTGGGCTTTCTCCCCAGGTTGTGAACATGAACAAAGGCATTCACTACAATAGCCCACAGTATCAGATGGCTCCTTTTTCCTATGCTAGTAGTTATGGTAGCCTTGGAAGCCATGGTAGTTATGGGGATGGTGTTGGTCTTGGGAGTAGTTTTGGGAGCTATGGAGACACTAGTAATGCCTATATGGGATACTTCCCAATCACACCTTCTGGACTTAATATACAGAGTCATGGTACTCCTGGCGGTACTGCTGTTGGAGCAAGTCCTGACACGAGGTGGAGGTTCTCACAAGCTCCTCCTGGGCATGCTCTTGGTATAAGCCCCTCTAGTGGCATGTTGAGGCCCATGTCCTTGGGAGCTAGTCCTTCTCAGTTTACTCCTCCAAGCTCTCAGATACAGGTTTCTTCTGGATCTCCTATAGGTTCGCCTGGCAGGTATGGACCAACCTCACCTGCCAGAAATAGTATTCATGTTGCTGGTTTAGGAAAGGCAGCTGCAGTCGGCCAGTATCACAAACGAAGGGGTTTCAGTATATCTGGCAGTTCGCATTTGCCACCCCAGGATAATATACCACAGCATTGGCAAGGTCACCAAAACAACGTGGGAGTCAATATGGATGTGGGTGCTGGTGGCATTGTAGATGGAAATACCCGAGGTGGTTATCCGGGCTCCCCTCGCAACAGTCAAGCAACTTCTCATCTTCAACCTTGGAGGCAAAGGGGTGGAAATGGTGTCACTACAGCGTTGATGGTATCAAATCAGCAAAAAAATTCCAGTGTATATGCGTCTGGTTTATATGGGGAGTCTCTGACTTCAATGGAGACATGCTCGGAGGGATTGGAAAGCAGTTCACCACCACCAGATCCTGGAGATTGGGATCCAAATTACAGTGATGAACTTCTTTTGCAAGAGGACGGGTCTGAGATAATTTCACCAAAGTCTGGATTTAGTGGAGTAGTACGATCAAGTCAAGGATCAGGTTCTGCTATTTCATCTGGTGCTGGAAGTGGTAGATCCGGTCGCAGCTATCCCCAGTCTCAAGCAGTTTCAAGCAGTAACCCAAACGTTCAAAGACTAAATGGAGTTCAGGGATATGTTAATCTAGAAGGCAGCCCACCATCAGCTCATGGAATTCAGCCAGGTTATAGTCGATCAATGTCAAAACCTTTGCATCACGGCGCATATTCAACTCAGCAGAGTCGATTGGGGCCACAGTCATCTCAGATCTTCCAGCAACATTTCCAGTACCACTATCATCCTCAATCAATGCTAAATCCTGATCAGCAGTTGATTCCTAATGCATTAGGGCATCTGCACATACATCAATCAAGTAATGCAGGACACAGTCAGCTTTCCAATGGAGGAGGGGGGAGGGGCCCTGGTTATTCAGTATCCTCCACTCAGATAGATACCCGAGCAGAACACGCTCGGGCTTCTGGATTTGGAAGTAGGATAAGCATTGGGGCACCTGGTCATGCAAACTATCCTCAAGATCATATTTTGGAGAGCACCTTACAATGCTTGCATGGGATTCCTCATACTCAAGGACAAGGCTCTCTAACAAATGAAATATCTTGGGGTACTCAGGGTCGAAGGACTGGTCATCCCTTCACCACTATTCCACCATCTAATGGCAGAAGAGATTACAGGAGGATTGGTTGA___TTTTAAAAGCTGGCTTATTTCTGTTTTTCAGGAGGATATCAATATTCTTTATTGGATCCGTTCATGCATTCCAGTTCTGTATAAGATGCTAGAAATGGTATTCCTCAAGTTTGTATTTCTTAAGATGTAATGGTCTGGGCATGTTTGCCAACCAAAACATATTTCTTTGTTTAGTGCCCCCCCAAAGAAATTGTCAATTGGATAGGCTGACTTGAGCTTTGAGAGTAATAGTTATAACTTGTGACTTACTCATAAGTAGCCAGTCCCTTAAGATTACCAATGACATGATTGCTGGCGGTGCTACACATGTTACAAGCAAGAAAATTTCTCTCCTTTCATAAGATATTTCGTGCCCTTGTCTTGTACATCTGCCATACATATGAATTTCCATCTCTACTTAATACTAAATGGTAGGTTGATTTAAATTGCTGCAAAGTTAAAACTGACAATCTCATTATTTAGATTATGCTGTACCTATGATCTTCTGTTCACTGCTGTTTCTTTTCTGTTTCATTCAATCTGTTAATATGTGACATTTCAATGTAAATCTATTTCAATTATCGTTTTAGTTTGAGACATTATATTGCGGTAGTCAAGC

Fln Alignment:

Contig532___GLVQFDPEKRWTPGQAARHPFVTEEAFTCPYTPAPETPRKPVSQIVTVDHNPGSGHWFGAGLSPQVVNMNKGIHYNSPQYQMAPFXXXXXXXXXXXXXXXXXGVGLGSSFGSYGDTSNAYMGYFPITPSGLNIQSHGTPGGTAVGASPDTRWRFSQAPPGHALGISPSSGMLRPMSLGASPSQFTPPSSQIQVSSGSPIGSPGRYGPTSPARNSIHVAGLGKAAAVGQYHKRRGFSISGSSHLPPQDNIPQHWQGHQNNVGVNMDVGAGGIVDGNTRGGYPGSPRNSQATSHLQPWRQRGGNGVTTALMVSNQQKNSSVYASGLYGESLTSMETCSEGLEXXXXXXXXXXXXPNYSDELLLQEDGSEIISPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPQSQAVSSSNPNVQRLNGVQGYVNLEGSPPSAHGIQPGYSRSMSKPLHHGAYSTQQ---SRLGXXXXXXXXXXXXXXXXXXSMLNPDQQLIPNALGHLHIHQSSNAXXXXXXXXXXXXXXXXXXXSTQIDTRAEHARASGFGSRISIGAPGHANYPQDHILESTLQCLHGIPHTQGQGSLTNEISWGTQGRRTGHPFTTIPPS-NGRRDYRRIG
C0PR87_____________GLVEFDPEKRWTPGQAARHPFVTEEAFTCPYMPAPETPRKPVSQIVTVDHNPGSGHWFGAGLSPQVVNMNKGIHFNSPQYQMAPFSYASSYGSLGSHGSYGDGVGLGSSFGSYGDTSNAYMGYCPITPSGLNIQNHGTPGGTSLGASPDTRWRLSQAPPGHALGISPSSGMLRPMSLGASPSQFTPPSSQIQVSSGSPIGSPGRYGPTSPARSGIHVTGLGKAAAVGQYHKRRGFSISGSSHLSPQDNIPQHWQGHQNNLGVNMDVGAGSFVDGNTRGGYPGSPRNSQATSHLQPSRQRGGNGIATASMVSNHQKNSSVYGSGLFGESPTAMETCSEGLESSSSPPDPGDWDPNYSDELLFQEDGSDIISPKSGSSGVVRSGQGSSSSSSSGAGIGRSGRSYPQCQASSSSNPNVQRLNGCQGYVNLEGSPPSAHGMQPGYIRSMSKPLHHGSYSTPQNPLSRLGQQSSQIFQQHFQYQYHPQSMLNPDQQLVSNAFGQLHIHQSSNV--GHGQLSNGGRGSGYSLSSTQIDTRAEHTRVSGIGSRISIGAPGHANYPQDHFLESTSQCLPGIPHTQGQGSLTNEISW---GRRTGHPFTTLPPSINGRRDYRRIG

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
1005		25		75	0.996473
1102	88		11		0.923564
1517		72		27	1.0
1540		88	11		0.923564
1541	11	88			0.923564
1543			11	88	0.923564
1661	18		81		0.999994
1784	90			10	0.90298
1787	90		10		0.90298
1790	88		11		0.923564
1795			11	88	0.923564
1796	88	11			0.923564
1798	11			88	0.923564
1800			12	87	0.992554
1801			12	87	0.992554
1804	12			87	0.992554
1805		14	85		0.993533
1809		14	85		0.993533
1815	16		83		0.994512
1835		60	40		1.0
1851	20	80			0.995493
1854			80	20	0.995493
1855	80			20	0.995493
1859	50	50			1.0
1860	50	50			1.0
1862	50	50			1.0
1992		11		88	0.923564
2204		66		33	1.0
2220	83	16			0.994512
2221	16			83	0.994512
2226	16			83	0.994512
2227	16			83	0.994512
2229			16	83	0.994512
2233		16		83	0.994512
2234	33		66		1.0
2236	16			83	0.994512
2238	83		16		0.994512
2356			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain