SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene514

Length: 1989 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene514
CATATCAGAAGTAACGAGACACACGCGGTAAGTCACTCTCAAGCCTGCTGGACCACTCTTCCAAATCAGATGTTTTGTAACAGGCGATTCCTACCTCTTCCAAGTCTGAAGAAACAATGGATTGGAGCGTAGAATATGCGACAGCATCAATAGCGCTGGCTTTGTTGGTGATACTATATTTCAAAATGAAATGCAGTGGTGACCTGTGCCATCCTGTGGCTGCAACCGTTGTTTCTCACATCATCAATTTCAAACGCATACATGACTATCTTTGTGATCATCACAGACGCTACAAAACTTACAGGATATCTTATCCTACTTTCAGCTACGTTTATACCACGGATCCTGCAAATGTGGAGCACATTCTTAGAAAAAATTTTGCAAACTACGTCAAGGGAAAGTTCATCCATGATATTATGGAAGACCTTTTCGGGGATGGCATTTTGATCGTTGATGGTGAGCAGTGGCGACAACAGCGAAAATTAGCTAGTTTTGAGTTCTCTACCAAAATGTTGAAGGACTTCAGCAGTGTTGCTTTCCGAGAGAATGTAGTGAAACTTTCCAAAATTCTTTTGGGAGCTTCTGGAGCAAAGCAAGCAGTAGAGATGCAGGGTCTTTTACTGAAATCAACAATGGATGCAATCTGCAAACTGGGCTTTGGGGTGGAAATCAACAGCTTATCAAAGGCCAACTCTGGAGCAGAGGCATCTTTTGCAGAGGCTTTTGATACTGCAAATGCTATGCTTTTGTGGCGTTATGTTGATCTTTCTTGGAAATTAAAACGATACTTCAATATTGGGTCAGAAGTCACCATGAAGGAAAGCATCAAAACAGTGGATGATTTTGTCTACAAGGTCATTCAGAAGAGAAGAAAGGAGATTTCCGTCCAAAATAACTATGTAAAACCAGATATATTGTCTCGCTTTATTGCATTGAGTGAGAAACACCCAGAGAATTGCTCGGACAAGTATCTCCGAGATATTATTCTGAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAAAATCCAGATGTTGAAGGAAAAATTCTGCAAGAAATTTGTGGCCTGGTCAAGGAAAATGAATGTATATCAATTGAAGAATCTATAAGTATGTTTTCTCAAAGTCTGACGCAATCAGTATTGGATAACATGCACTATCTTCAAGCAGCTTTATCAGAAGCCTTGCGCCTACACCCAGCTGTTCCTGTGGATGGAAAATATGTAGTTTCTGATGACATCCTTCCCGATGGATTCAAAGTCAAGAAAGGTGATATAATCAATTATGTCCCTTACTCAATGGGAAGAATGACATACCTCTGGGGCAGTGATGCAGAGGAGTTTAGGCCAGAGAGGTGGCTTCAGAATGGAGTTTTTACGCCTCAATCACCATTCAAATTCACTGCATTTCAGGCTGGACCTCGCATTTGTCTTGGCAAGGACTTTGCATACATGCAAATGAAGATTTTTGCTGCTGTGCTTGTACGTTTCTTCAAATTTGAAGCTGTTGAAGGTAAGGAAGTGAAATATCGTCCCTCACTGACACTCCATATGACTGAAGATGGATTAAATCTTCGTGTCAAGCCTAGATTAGATTGCTGATCACAGTTTTACTTCACAATAAGGTACAGCAATACACAGAAAGCTTTTATCCGTTGTACATAAGTATTTTAAGATATTCTGATTTTGTCTAGTTGAAGGCATCTTATTTTGAGTCATACCACAATATCAAAACCCCCTTGGGTGATGAAAACATTGTTTGAATAGAAAATGTTGAAGGAGCCAGACAAGTAGAACACACTAGGCACAGTCTACAGAACAGTGCTTCACAATATAAGTTATATCATCTTATGTATTCATAGGTGCCCATCTGTGGCATCAATTCCCTGTTTTTCTAATAAGAACTTTATCTTATTCTTTTGAATAAATGTTTAATAAAATAATAAAGAATTACTGG

Ace file of the UniGene sp_v2.0_unigene514 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	58%
FL-Next	sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine).	-	-	58%
Blast2go	cytochrome p450	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	70%
Blast2go	iron ion binding	GO:0005506	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK3

Fln msg:

Fln protein: MDWSVEYATASIALALLVILYFKMKCSGDLCHPVAATVVSHIINFKRIHDYLCDHHRRYKTYRISYPTFSYVYTTDPANVEHILRKNFANYVKGKFIHDIMEDLFGDGILIVDGEQWRQQRKLASFEFSTKMLKDFSSVAFRENVVKLSKILLGASGAKQAVEMQGLLLKSTMDAICKLGFGVEINSLSKANSGAEASFAEAFDTANAMLLWRYVDLSWKLKRYFNIGSEVTMKESIKTVDDFVYKVIQKRRKEISVQNNYVKPDILSRFIALSEKHPENCSDKYLRDIILNFMIAGRDTTAVTLCWFFHLLCKNPDVEGKILQEICGLVKENECISIEESISMFSQSLTQSVLDNMHYLQAALSEALRLHPAVPVDGKYVVSDDILPDGFKVKKGDIINYVPYSMGRMTYLWGSDAEEFRPERWLQNGVFTPQSPFKFTAFQAGPRICLGKDFAYMQMKIFAAVLVRFFKFEAVEGKEVKYRPSLTLHMTEDGLNLRVKPRLDC*

Protein Length: 507

Fln nts: CATATCAGAAGTAACGAGACACACGCGGTAAGTCACTCTCAAGCCTGCTGGACCACTCTTCCAAATCAGATGTTTTGTAACAGGCGATTCCTACCTCTTCCAAGTCTGAAGAAACA_-_ATGGATTGGAGCGTAGAATATGCGACAGCATCAATAGCGCTGGCTTTGTTGGTGATACTATATTTCAAAATGAAATGCAGTGGTGACCTGTGCCATCCTGTGGCTGCAACCGTTGTTTCTCACATCATCAATTTCAAACGCATACATGACTATCTTTGTGATCATCACAGACGCTACAAAACTTACAGGATATCTTATCCTACTTTCAGCTACGTTTATACCACGGATCCTGCAAATGTGGAGCACATTCTTAGAAAAAATTTTGCAAACTACGTCAAGGGAAAGTTCATCCATGATATTATGGAAGACCTTTTCGGGGATGGCATTTTGATCGTTGATGGTGAGCAGTGGCGACAACAGCGAAAATTAGCTAGTTTTGAGTTCTCTACCAAAATGTTGAAGGACTTCAGCAGTGTTGCTTTCCGAGAGAATGTAGTGAAACTTTCCAAAATTCTTTTGGGAGCTTCTGGAGCAAAGCAAGCAGTAGAGATGCAGGGTCTTTTACTGAAATCAACAATGGATGCAATCTGCAAACTGGGCTTTGGGGTGGAAATCAACAGCTTATCAAAGGCCAACTCTGGAGCAGAGGCATCTTTTGCAGAGGCTTTTGATACTGCAAATGCTATGCTTTTGTGGCGTTATGTTGATCTTTCTTGGAAATTAAAACGATACTTCAATATTGGGTCAGAAGTCACCATGAAGGAAAGCATCAAAACAGTGGATGATTTTGTCTACAAGGTCATTCAGAAGAGAAGAAAGGAGATTTCCGTCCAAAATAACTATGTAAAACCAGATATATTGTCTCGCTTTATTGCATTGAGTGAGAAACACCCAGAGAATTGCTCGGACAAGTATCTCCGAGATATTATTCTGAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAAAATCCAGATGTTGAAGGAAAAATTCTGCAAGAAATTTGTGGCCTGGTCAAGGAAAATGAATGTATATCAATTGAAGAATCTATAAGTATGTTTTCTCAAAGTCTGACGCAATCAGTATTGGATAACATGCACTATCTTCAAGCAGCTTTATCAGAAGCCTTGCGCCTACACCCAGCTGTTCCTGTGGATGGAAAATATGTAGTTTCTGATGACATCCTTCCCGATGGATTCAAAGTCAAGAAAGGTGATATAATCAATTATGTCCCTTACTCAATGGGAAGAATGACATACCTCTGGGGCAGTGATGCAGAGGAGTTTAGGCCAGAGAGGTGGCTTCAGAATGGAGTTTTTACGCCTCAATCACCATTCAAATTCACTGCATTTCAGGCTGGACCTCGCATTTGTCTTGGCAAGGACTTTGCATACATGCAAATGAAGATTTTTGCTGCTGTGCTTGTACGTTTCTTCAAATTTGAAGCTGTTGAAGGTAAGGAAGTGAAATATCGTCCCTCACTGACACTCCATATGACTGAAGATGGATTAAATCTTCGTGTCAAGCCTAGATTAGATTGCTGA___TCACAGTTTTACTTCACAATAAGGTACAGCAATACACAGAAAGCTTTTATCCGTTGTACATAAGTATTTTAAGATATTCTGATTTTGTCTAGTTGAAGGCATCTTATTTTGAGTCATACCACAATATCAAAACCCCCTTGGGTGATGAAAACATTGTTTGAATAGAAAATGTTGAAGGAGCCAGACAAGTAGAACACACTAGGCACAGTCTACAGAACAGTGCTTCACAATATAAGTTATATCATCTTATGTATTCATAGGTGCCCATCTGTGGCATCAATTCCCTGTTTTTCTAATAAGAACTTTATCTTATTCTTTTGAATAAATGTTTAATAAAATAATAAAGAATTACTGG

Fln Alignment:

Contig514___VEYATASIALALLVILYFKMKCSGDLCHPVAATVVSHIINFKRIHDYLCDHHRRYKTYRISYPTFSYVYTTDPANVEHILRKNFANYVKGKFIHDIMEDLFGDGILIVDGEQWRQQRKLASFEFSTKMLKDFSSVAFRENVVKLSKILLGASGAKQAVEMQGLLLKSTMDAICKLGFGVEINSLS--KANSGAEASFAEAFDTANAMLLWRY-VDLSWKLKRYFNIGSEVTMKESIKTVDDFVYKVIQKRRKEI-SVQNNYVKPDILSRFIALSEKHPEN-CSDKYLRDIILNFMIAGRDTTAVTLCWFFHLLCKNPDVEGKILQEICGL--VKENXXXXXXXXXSMFSQSLTQSVLDNMHYLQAALSEALRLHPAVPVDGKYVVSDDILPDGFKVKKGDIINYVPYSMGRMTYLWGSDAEEFRPERWLQNGVFTPQSPFKFTAFQAGPRICLGKDFAYMQMKIFAAVLVRFFKFEAVEGKEVKYRPSLTLHMTEDGLNLRVKPRLD
Q50EK3_____________VTVSALALACSLWIASYLRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSSGVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVIHFRRQEMFSAEKENVRPDILSRYIIISDKETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDAKEFKPERWIQDGIFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRLN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1639		83	16		0.994512
1640	83	16			0.994512
1641			16	83	0.994512
1642	16			83	0.994512
1726	77		22		0.999999
1735	22			77	0.999999
1736		11	88		0.923564
1738		11	88		0.923564
1739	11			88	0.923564
1755	25			75	1.0
1799		14	85		0.993533
1816	83	16			0.994512
1817		16		83	0.994512
1818	83	16			0.994512
1819	16		83		0.994512
1909		33	66		0.997452
1910	33	66			0.997452
1911		66	33		0.997452
1912	33			66	0.997452
1913		33	66		0.997452
1915		33		66	0.997452
1917		66	33		0.997452
1920	66		33		0.997452
1925		66		33	0.997452
1928	66		33		0.997452
1931		33		66	0.997452
1932		33		66	0.997452
1933		33	66		0.997452
1934		33	66		0.997452
1935	66	33			0.997452
1937			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain