SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene510

Length: 1997 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene510
TTGAGCGTAAATGTAGAAGCGGGAAATGGGAGATATTTCGCTTTCAGTAATTTGAAAAGCCATTGTTACAGCACTTTAATGTGAGGCTTACCGTGATTTTACGCCAAGTTTTCATCCGCAAATGTTGATCTTAGTTCGATTTGCGTGTTGAATGATTAAAGGCAAACTGTGATTTACATTAGAAGCGGATTATAGTTTGTGCGACCGTGACTGTTGTCATCTCTCCTGTGGAATAAAGATTGCCATGAGCTCCAATGGTACGGTGAACCCGAGGAGATTTTCTCCGAAACGATCTCCTCCTTGTGAGAATTACGTGCGTTTCAACAAAAGCGATGACGAAGACGAAACACAGAATGATGTTTTTAATATCCTTCACAAGAAAGCACCATTGGAGAGCCTCAGGAAATGGAGGCAAGCAACATTGGCTCTTAATGCATCTCGGCGGTTTAGGTATACTTTAGATCTAAAAAGGGCTGAGGAAAAAGAACAGATTATAAGAAAGATCAGAGCCAGTGCTCAAGCTGTAAGGGCAGTCTATCTCTTCAAGAAAGGTGTTCAAAATACAAAGAAAGAGGAGGAAGCTCCCCCAGAAGGATTTGAAATTGGACCAACAACACTTGCAAACTTGGTTAGAGAGCGTGACCTGAATTGTCTACAGCAGCTGGGAGGGGTAAATAAAGTAGCCGAGCTATTACATACTGATCTGGAGAAGGGTATTAATGAAGTTCCAGAAGAAATTCAACGTCGAGTGAATGCTTATGGAGAGAACTCGTATCCACGAAAGGCTGCACGCAATTTTTTTGTTTTCGTGTGGGAGGCATTACAAGACACAACACTCATAATTTTGATGGTTTGTGCGGCCCTGTCACTTGTTTTCGGCATAAAAACTGAAGGCATTAAGGAAGGGTGGTTTGATGGTGGGAGTATATTTTTTGCTGTGATCCTTGTCATTTTTGTTACAGCAATCAGTGATTACAGACAATCTCTTCAATTCCAAAATCTGAATGAGGAGAAGAGAAACATTCAACTTCAGGTGATCAGAGGTGGAAGAAGAAGTAAAGTTTCCATATTCGATCTTGTTGTTGGTGATGTTGTTCCCCTCAATATTGGTGATCAGGTCCCTGCAGATGGCATCCTTATTGAAGGACATTCACTATCAATTGATGAATCTAGTATGACTGGGGAGAGCAAATATGTTTATAAAGATAAGAAAAATCCCTTTCTGATGTCTGGCTGTAAGGTGGCAGATGGCTATGGTACCATGCTGGTAACTGGTGTGGGATTAAATACTGAGTGGGGTTTAGTGATGGCTACCATATCAGAGGATAATGGGGAAGAAACTCCCCTACAGGTCCGCCTCAACGGTGTTGCGACTTTTATTGGTAAGGTTGGACTTGCAGTGGCAGTTCTAGTCTTTCTTATCCTCATAGTTAGATTTTTTACTGGACATACAGAGGACTCCGATGGGAAACCCATGTTTAAAGCAGGAAAGACCAAGGTTGGAGATGCGTTTAATGGAATTGTTAAAATATTTGCAATTGCGGTCACCATTGTTGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACCCTGACTTTAGCTTATTCAATGAGGAAGATGATGGCGGACAAGGCTTTGGTACGAAGGTTGTCAGCCTGCGAGACTATGGGCTCTGCTACGACAATTTGTAGTGACAAAACAGGAACACTGACCTTGAATCAGATGACAGTTGTTAAGGCGTTCATTGCTGGTGAAAGCAGAGAGCCGCCGGACAGTTCAGAAAGTCTTCCATCTCTCGTACAAGCACTTCTTGTTGAGGGTATATCCCAGAATACTACAGGGAGTGTCTGTAAATCTAAGGGTAGTGGAGAGATGGAAGTGACTGGATCCCCAACAGAGAAGGCTATTCTTTCTTGGGCATTGAAGCTTGGAATGAATTTTGATGATGAAAGATCCAAATCTTCCGTCTTACATGTTTTTACTTTCAACTCGG

Ace file of the UniGene sp_v2.0_unigene510

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Autoinhibited calcium ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IN45_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	calcium-transporting atpase plasma membrane-type-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	78%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	78%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Distance to subject end: 520 aas, your sequence is shorter than subject: 584 - 955

Fln protein: MSSNGTVNPRRFSPKRSPPCENYVRFNKSDDEDETQNDVFNILHKKAPLESLRKWRQATLALNASRRFRYTLDLKRAEEKEQIIRKIRASAQAVRAVYLFKKGVQNTKKEEEAPPEGFEIGPTTLANLVRERDLNCLQQLGGVNKVAELLHTDLEKGINEVPEEIQRRVNAYGENSYPRKAARNFFVFVWEALQDTTLIILMVCAALSLVFGIKTEGIKEGWFDGGSIFFAVILVIFVTAISDYRQSLQFQNLNEEKRNIQLQVIRGGRRSKVSIFDLVVGDVVPLNIGDQVPADGILIEGHSLSIDESSMTGESKYVYKDKKNPFLMSGCKVADGYGTMLVTGVGLNTEWGLVMATISEDNGEETPLQVRLNGVATFIGKVGLAVAVLVFLILIVRFFTGHTEDSDGKPMFKAGKTKVGDAFNGIVKIFAIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVKAFIAGESREPPDSSESLPSLVQALLVEGISQNTTGSVCKSKGSGEMEVTGSPTEKAILSWALKLGMNFDDERSKSSVLHVFTFNS

Protein Length: 585

Fln nts: TTGAGCGTAAATGTAGAAGCGGGAAATGGGAGATATTTCGCTTTCAGTAATTTGAAAAGCCATTGTTACAGCACTTTAATGTGAGGCTTACCGTGATTTTACGCCAAGTTTTCATCCGCAAATGTTGATCTTAGTTCGATTTGCGTGTTGAATGATTAAAGGCAAACTGTGATTTACATTAGAAGCGGATTATAGTTTGTGCGACCGTGACTGTTGTCATCTCTCCTGTGGAATAAAGATTGCC_-_ATGAGCTCCAATGGTACGGTGAACCCGAGGAGATTTTCTCCGAAACGATCTCCTCCTTGTGAGAATTACGTGCGTTTCAACAAAAGCGATGACGAAGACGAAACACAGAATGATGTTTTTAATATCCTTCACAAGAAAGCACCATTGGAGAGCCTCAGGAAATGGAGGCAAGCAACATTGGCTCTTAATGCATCTCGGCGGTTTAGGTATACTTTAGATCTAAAAAGGGCTGAGGAAAAAGAACAGATTATAAGAAAGATCAGAGCCAGTGCTCAAGCTGTAAGGGCAGTCTATCTCTTCAAGAAAGGTGTTCAAAATACAAAGAAAGAGGAGGAAGCTCCCCCAGAAGGATTTGAAATTGGACCAACAACACTTGCAAACTTGGTTAGAGAGCGTGACCTGAATTGTCTACAGCAGCTGGGAGGGGTAAATAAAGTAGCCGAGCTATTACATACTGATCTGGAGAAGGGTATTAATGAAGTTCCAGAAGAAATTCAACGTCGAGTGAATGCTTATGGAGAGAACTCGTATCCACGAAAGGCTGCACGCAATTTTTTTGTTTTCGTGTGGGAGGCATTACAAGACACAACACTCATAATTTTGATGGTTTGTGCGGCCCTGTCACTTGTTTTCGGCATAAAAACTGAAGGCATTAAGGAAGGGTGGTTTGATGGTGGGAGTATATTTTTTGCTGTGATCCTTGTCATTTTTGTTACAGCAATCAGTGATTACAGACAATCTCTTCAATTCCAAAATCTGAATGAGGAGAAGAGAAACATTCAACTTCAGGTGATCAGAGGTGGAAGAAGAAGTAAAGTTTCCATATTCGATCTTGTTGTTGGTGATGTTGTTCCCCTCAATATTGGTGATCAGGTCCCTGCAGATGGCATCCTTATTGAAGGACATTCACTATCAATTGATGAATCTAGTATGACTGGGGAGAGCAAATATGTTTATAAAGATAAGAAAAATCCCTTTCTGATGTCTGGCTGTAAGGTGGCAGATGGCTATGGTACCATGCTGGTAACTGGTGTGGGATTAAATACTGAGTGGGGTTTAGTGATGGCTACCATATCAGAGGATAATGGGGAAGAAACTCCCCTACAGGTCCGCCTCAACGGTGTTGCGACTTTTATTGGTAAGGTTGGACTTGCAGTGGCAGTTCTAGTCTTTCTTATCCTCATAGTTAGATTTTTTACTGGACATACAGAGGACTCCGATGGGAAACCCATGTTTAAAGCAGGAAAGACCAAGGTTGGAGATGCGTTTAATGGAATTGTTAAAATATTTGCAATTGCGGTCACCATTGTTGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACCCTGACTTTAGCTTATTCAATGAGGAAGATGATGGCGGACAAGGCTTTGGTACGAAGGTTGTCAGCCTGCGAGACTATGGGCTCTGCTACGACAATTTGTAGTGACAAAACAGGAACACTGACCTTGAATCAGATGACAGTTGTTAAGGCGTTCATTGCTGGTGAAAGCAGAGAGCCGCCGGACAGTTCAGAAAGTCTTCCATCTCTCGTACAAGCACTTCTTGTTGAGGGTATATCCCAGAATACTACAGGGAGTGTCTGTAAATCTAAGGGTAGTGGAGAGATGGAAGTGACTGGATCCCCAACAGAGAAGGCTATTCTTTCTTGGGCATTGAAGCTTGGAATGAATTTTGATGATGAAAGATCCAAATCTTCCGTCTTACATGTTTTTACTTTCAACTCGG

Fln Alignment:

Contig510___EIQRRVNAYGENSYPRKAARNFFVFVWEALQDTTLIILMVCAALSLVFGIKTEGIKEGWFDGGSIFFAVILVIFVTAISDYRQSLQFQNLNEEKRN---IQLQVIRGGRRSKVSIFDLVVGDVVPLNIGDQVPADGILIEGHSLSIDESSMTGESKYVYKDK-KNPFLMSGCKVADGYGTMLVTGVGLNTEWGLVMATISEDNGEETPLQVRLNGVATFIGKVGXXXXXXXXXXXXXRFFTGHTEDSDGKPMFKAGKTKVGDAFNGXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVKAFI
B8LQS1_____________EGENRLQIFGFNKLEEKKESKFLKFL--GFMWNPLSWVMEIAAIMAIALANGDNKPPDWQD----FLGIVVLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGRWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGV--HTFFGKAAHLVDSTNNVG-----HFQKVLTAIGNFCICSIAIGIVIEII-------------VMYPIQHRKYRDGINN-------LLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
357		33		66	1.0
374		33		66	0.997452
375	33			66	0.997452
387	66			33	0.997452
390	66		33		0.997452
391		33		66	0.997452
404	33		66		0.997452
406	66	33			0.997452
414	33		66		0.997452
444			75	25	0.996473
445		75	25		0.996473
446	25		75		0.996473
447		25	75		0.996473
448		25		75	0.996473
451	75		25		0.996473
453		25	75		0.996473
455	75		25		0.996473
460	25			75	0.996473
603	87	12			0.992554
604	87	12			0.992554
611		87		12	0.992554
612	87		12		0.992554
613	87			12	0.992554
616	87			12	0.992554
690		14	85		0.993533
700	88		11		0.923564
701		88	11		0.923564
796	16			16	0.988813
798	83			16	0.994512
853		25	75		1.0
856			25	75	1.0
859	25			75	1.0
860		25	75		1.0
862			75	25	1.0
863			75	25	1.0
864		75	25		1.0
865		75	25		1.0
893		20	80		0.999996
894	80		20		0.999996
895	80			20	0.999996
897	20	10	70		0.999998
899	80	20			0.999996
902	80		20		0.999996
903	80	20			0.999996
904			80	20	0.999996
911		10		90	0.90298
913	10		90		0.90298
1082		30	70		1.0
1208	66			33	0.997452
1209	33		66		0.997452
1310		20	80		0.995493
1405	25			75	0.996473
1449	12	87			0.992554
1453	75		12	12	0.975346
1538			10	90	0.90298
1918		33		66	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1551	1562	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain