SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene505

Length: 2614 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene505
CGTCGTGACCTTGGCTGTCACTCAATTCGGAGGCCTTACATTTCTCCGCAGTCATACATTTTGTCCAAAATTAATACGATTTCGCTCAGACCGTCTATATCTCCCACCTATTAAAATAAACCTCCAAAACTGGCGGTTTCCTCTGTGATTATCAACAAACAAGCTTCTGTAACGCCAAGCTACGGTTCAGGCACCAGCAAACCGCGATCTGCGAAGCGCCAGCAGCAGGACCGTGGAATAAATATATCGTGGCTCTATATTTCATAGGGCCTGCAGGGTCGAGGGTGGGAGGATCACAATGGATTATAATCGGCTGAGAAGTGGGGGGAGCCCCGTTTATTCTCGGCAAAGGAGCGGAGCCAGCAGCACGAGCACCAATTCATCATCTTCTCCTTCGAGGTCCCCGGCCCATCCTGCCGCCGCTGCTCATCATCACCATGTCCGGTCCGGATCGACCGCGCTCTCCAACATCAAGAGAACTCAGAATTATGCCGCGAAGGCTGCCGCTCAGCGTCTCGCCCAGGTCATGGCTTCTCAGTCCAATGACGATGACGATGAGGACGATATGCCCTTCCGCTACGGCTCTACCCCCTCTTCCAATTCCTATGCCAGCGCTAACAGTATTCACAACATCGGCTCCTCCGCCAAGGCTACCCGATCACCCTCTCCTGCGTTAGGAAGAAATTTCATTGAGCACACTTCAACCATCCGCTCTACATCAGCTGGTCGGCCATCTATTGCAGGTCGGCCAGCACCCTTGGTTCCACCAAGTGGAGCAACAGTAAGGCAAAGGCCAACCATACCTCCCTTGGATACTACTGATATACGTCGGGATAAAAGATTTCCTGCTGACCTTGGGCGTTTGAATATCCGAGATGGAACTGGTAATCAACGAGAGGCTTCAGGTCTCCGTGATGAGATTGATATGCTTCAAGAGGAGAATGAAACTCTTCTTGATAAGCTCCGGCTTGCGGAAGAAAAATGGGAGGAGACAGAAGCCAGAGCAAGGGAGCTTGAAAAACAGGTTGCATCCCTCGGAGAAGGCATTTCATTGGAGGCACGCTTATTAAACAGAAAGGAGGCAGCATTGCGTCAGAGGGAGGCTGCTCTTAAAGCTGCAGCACAAACTAAGGATGTTAAAGATGATGAAATAGCAGCCCTTCGATTGGAAGCAGAGGCTGCAAGGGATGAGGCGGCATCAGCTGCTGAACAGTTTCGTGAAGCAGAAGCTGAAGCAAAATCACTGCGTTCAATGACTCAAAGGATGATTTTAACTCAGGAAGAAATGGAAGAAGTGGTTCTGAAGAGATGTTGGCTTGCTCGTTATTGGAGTCTAGCTGTGCGTCATGGAATTCATGCAGATATTGCTGGCCCAAAGCATGAACATTGGTCATCTCTAGCCCCTCTTCCCCTTGAGCTGGTTATCTCTGCAGGACAGAAAGCAAAAGAAGATCCTGGGAAGCTAAGTCGACCTTCAGAAAATGGATATGATGAACCTGAAAAAAGGGCTAAAATTACACGTGATCTGAATGATCTAAATGGGGAAGGAAATATTGAGAGCATGCTTTCTGTTGAGAAAGGTCTGCGTGAGCTTGCTTCTGTGAAGGTGGAGGATGCTGTGGTGTTTGCAATGTCTTCAACATCGACGACCAAACCTTGTTCGGGGGGCCAGGCATTTCCAGACTTGAAATCTCCAGTGGATAGTCCAAAGCTTGTTGAGGCATTTGAACTGAGCCAGGAAGAGGTTGAAGATGTTCAGTTTAAGCAGGCCTGGCTTATATATTTTTGGCGAAGAGCCAAGAACCATGGAGTGGAAGAGGATATTGCAGATGAGCGCCTACAGTACTGGATTAGCCGAAATAATCAGTTGCCCACATCTCATGATGCAGTTGATGTTGAACGAGGCCTTGTAGAGCTTCGGAAGCTTGGGATAGAAGATCAATTGTGGGAAGCATCTCGGAAGGAAATTGAACTAGAAGTTAATAATCAGAAGAACAATGCAGAGGCAGAAGCAGCTGCTACATGATCATGATTCCAAGGCGAAAACTTCAAATTTTTTGGGTTGAATCAATAATTTATCAGTTAGTTCCAATTTCAGGTTACACAAATCTGCTCCTGATATGTTTGGATAATTATGTAAAATAAAATACGAGCTGCAGTCAATTACTTTTAGCTGACTGGGGGGTATTGCAGTTAAGCATTGTTGGGCTTGCTGATTTCAAAATCAAAGAAAACTTAATTTTAAGCACACTTACGATTTTCGTCGATTTGTTGAGAATTCCTGGTTTTCTCTGACTGGGGGGTATTGCAGTTAAGCATTGTTGGGCTTGCTGATTTCAAAATCAAAGAAAACTTAATTTTAAGCACACCTACGATTTTCGTCGATTTGTTGAGAATTCCTGGTTTTCTCCTCACAGGGCCAAGAGCATGTAAGAAAAATTTTCTGAGATGAAATCCAGCTGTAAATTTGAAGCATGCGTGTTTCTGGCAGATAAGAGGTTGTATGGGTATGACTTTCTGAAACAAATGTATAACTGAAAGGTAAATTAATATAATCGTTATTTTCGCATAGAACGGAGTATTTTGAGTTAACTGGCTTATTACAACTGATTAG

Ace file of the UniGene sp_v2.0_unigene505 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Macoilin multi-domain protein	-	-	3.0e-08	20%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GT38

Fln msg:

Fln protein: MDYNRLRSGGSPVYSRQRSGASSTSTNSSSSPSRSPAHPAAAAHHHHVRSGSTALSNIKRTQNYAAKAAAQRLAQVMASQSNDDDDEDDMPFRYGSTPSSNSYASANSIHNIGSSAKATRSPSPALGRNFIEHTSTIRSTSAGRPSIAGRPAPLVPPSGATVRQRPTIPPLDTTDIRRDKRFPADLGRLNIRDGTGNQREASGLRDEIDMLQEENETLLDKLRLAEEKWEETEARARELEKQVASLGEGISLEARLLNRKEAALRQREAALKAAAQTKDVKDDEIAALRLEAEAARDEAASAAEQFREAEAEAKSLRSMTQRMILTQEEMEEVVLKRCWLARYWSLAVRHGIHADIAGPKHEHWSSLAPLPLELVISAGQKAKEDPGKLSRPSENGYDEPEKRAKITRDLNDLNGEGNIESMLSVEKGLRELASVKVEDAVVFAMSSTSTTKPCSGGQAFPDLKSPVDSPKLVEAFELSQEEVEDVQFKQAWLIYFWRRAKNHGVEEDIADERLQYWISRNNQLPTSHDAVDVERGLVELRKLGIEDQLWEASRKEIELEVNNQKNNAEAEAAAT*

Protein Length: 577

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGGAGGCCTTACATTTCTCCGCAGTCATACATTTTGTCCAAAATTAATACGATTTCGCTCAGACCGTCTATATCTCCCACCTATTAAAATAAACCTCCAAAACTGGCGGTTTCCTCTGTGATTATCAACAAACAAGCTTCTGTAACGCCAAGCTACGGTTCAGGCACCAGCAAACCGCGATCTGCGAAGCGCCAGCAGCAGGACCGTGGAATAAATATATCGTGGCTCTATATTTCATAGGGCCTGCAGGGTCGAGGGTGGGAGGATCACA_-_ATGGATTATAATCGGCTGAGAAGTGGGGGGAGCCCCGTTTATTCTCGGCAAAGGAGCGGAGCCAGCAGCACGAGCACCAATTCATCATCTTCTCCTTCGAGGTCCCCGGCCCATCCTGCCGCCGCTGCTCATCATCACCATGTCCGGTCCGGATCGACCGCGCTCTCCAACATCAAGAGAACTCAGAATTATGCCGCGAAGGCTGCCGCTCAGCGTCTCGCCCAGGTCATGGCTTCTCAGTCCAATGACGATGACGATGAGGACGATATGCCCTTCCGCTACGGCTCTACCCCCTCTTCCAATTCCTATGCCAGCGCTAACAGTATTCACAACATCGGCTCCTCCGCCAAGGCTACCCGATCACCCTCTCCTGCGTTAGGAAGAAATTTCATTGAGCACACTTCAACCATCCGCTCTACATCAGCTGGTCGGCCATCTATTGCAGGTCGGCCAGCACCCTTGGTTCCACCAAGTGGAGCAACAGTAAGGCAAAGGCCAACCATACCTCCCTTGGATACTACTGATATACGTCGGGATAAAAGATTTCCTGCTGACCTTGGGCGTTTGAATATCCGAGATGGAACTGGTAATCAACGAGAGGCTTCAGGTCTCCGTGATGAGATTGATATGCTTCAAGAGGAGAATGAAACTCTTCTTGATAAGCTCCGGCTTGCGGAAGAAAAATGGGAGGAGACAGAAGCCAGAGCAAGGGAGCTTGAAAAACAGGTTGCATCCCTCGGAGAAGGCATTTCATTGGAGGCACGCTTATTAAACAGAAAGGAGGCAGCATTGCGTCAGAGGGAGGCTGCTCTTAAAGCTGCAGCACAAACTAAGGATGTTAAAGATGATGAAATAGCAGCCCTTCGATTGGAAGCAGAGGCTGCAAGGGATGAGGCGGCATCAGCTGCTGAACAGTTTCGTGAAGCAGAAGCTGAAGCAAAATCACTGCGTTCAATGACTCAAAGGATGATTTTAACTCAGGAAGAAATGGAAGAAGTGGTTCTGAAGAGATGTTGGCTTGCTCGTTATTGGAGTCTAGCTGTGCGTCATGGAATTCATGCAGATATTGCTGGCCCAAAGCATGAACATTGGTCATCTCTAGCCCCTCTTCCCCTTGAGCTGGTTATCTCTGCAGGACAGAAAGCAAAAGAAGATCCTGGGAAGCTAAGTCGACCTTCAGAAAATGGATATGATGAACCTGAAAAAAGGGCTAAAATTACACGTGATCTGAATGATCTAAATGGGGAAGGAAATATTGAGAGCATGCTTTCTGTTGAGAAAGGTCTGCGTGAGCTTGCTTCTGTGAAGGTGGAGGATGCTGTGGTGTTTGCAATGTCTTCAACATCGACGACCAAACCTTGTTCGGGGGGCCAGGCATTTCCAGACTTGAAATCTCCAGTGGATAGTCCAAAGCTTGTTGAGGCATTTGAACTGAGCCAGGAAGAGGTTGAAGATGTTCAGTTTAAGCAGGCCTGGCTTATATATTTTTGGCGAAGAGCCAAGAACCATGGAGTGGAAGAGGATATTGCAGATGAGCGCCTACAGTACTGGATTAGCCGAAATAATCAGTTGCCCACATCTCATGATGCAGTTGATGTTGAACGAGGCCTTGTAGAGCTTCGGAAGCTTGGGATAGAAGATCAATTGTGGGAAGCATCTCGGAAGGAAATTGAACTAGAAGTTAATAATCAGAAGAACAATGCAGAGGCAGAAGCAGCTGCTACATGA___TCATGATTCCAAGGCGAAAACTTCAAATTTTTTGGGTTGAATCAATAATTTATCAGTTAGTTCCAATTTCAGGTTACACAAATCTGCTCCTGATATGTTTGGATAATTATGTAAAATAAAATACGAGCTGCAGTCAATTACTTTTAGCTGACTGGGGGGTATTGCAGTTAAGCATTGTTGGGCTTGCTGATTTCAAAATCAAAGAAAACTTAATTTTAAGCACACTTACGATTTTCGTCGATTTGTTGAGAATTCCTGGTTTTCTCTGACTGGGGGGTATTGCAGTTAAGCATTGTTGGGCTTGCTGATTTCAAAATCAAAGAAAACTTAATTTTAAGCACACCTACGATTTTCGTCGATTTGTTGAGAATTCCTGGTTTTCTCCTCACAGGGCCAAGAGCATGTAAGAAAAATTTTCTGAGATGAAATCCAGCTGTAAATTTGAAGCATGCGTGTTTCTGGCAGATAAGAGGTTGTATGGGTATGACTTTCTGAAACAAATGTATAACTGAAAGGTAAATTAATATAATCGTTATTTTCGCATAGAACGGAGTATTTTGAGTTAACTGGCTTATTACAACTGATTAG

Fln Alignment:

Contig505___FRYGSTP--SSNSYASA-NSIHNIGSSAKATRSPSPALGRNFIEHTSTIRSTSAGRPSIAGRPAPLVPPSGATVRQRPTIPPLD--TTDIRRDKRFPADLGRLNIRDGTGNQREASGLRDEIDMLQEENETLLDKLRLAEEKWEETEARARELEKQVASLGEGISLEARLLNRKEAALRQREAALKAAAQTKDVKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKSLRSMTQRMILTQEEMEEVVLKRCWLARYWSLAVRHGIHADIAGPKHEHWSSLAPLPLELVISAGQKAKEDPGKLSRPSENGYDEPEKRAKITRDLNDLNGEGNIESMLSVEKGLRELASVKVEDAVVFAMSSTSTTKPCSGGQAFPDLKSPVDSPKLVEAFELSQEEVEDVQFKQAWLIYFWRRAKNHGVEEDIADERLQYWISRNNQLPTSHDAVDVERGLVELRKLGIEDQLWEASRKE
F6GT38_____________FRYSAPPPPAPSSYASSINSNHSI-SSARATRSPSPALGRNFVEHTPSVRSTSAGRPAMSVRAMPIVPSSRATLRNPVSIPPMEPPAKNRPREKRSTLDLGHINLK-GAENQHEASALHDELDMLQEENENIREKLRLAEERREEAEARSRELEKQVAALGEGVSLEAKLLSRKEAALRQKEAALKAAKQTKDGRDEEIANLRLEIQNLKDGATTAIEQLQEAESEAKALRSMTKRMILTQEEMEEVVLKRCWLARYWGLAVHHAICADIALSKHEHWSSLAPLPFEVVISAGQKAKEE-------SWNGGGEDPDRSKLVRDLSDLTGEGNIESMLSVEMGLRELASLKVEDAIVLALALHR--RPNLVRQYSSD-KSPGD-PKSMESFELNQEEAEDVLFKEAWLTYFWRRAKVHGVEEDIAEERLQFWISRSGQTPTSHDAVDVERGLRELRKLGIEQQLWEASRKE

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
813		12		87	0.992554
866	10			90	0.90298
869	90			10	0.90298
870		90		10	0.90298
887		10		90	0.90298
938	87		12		0.992554
981	33			33	0.997753
985			75	25	0.996473
986	75		25		0.996473
987	25			25	0.995533
1001	83	16			0.994512
1002	16	83			0.994512
1003	83			16	0.994512
1004	16		83		0.994512
1005		66		33	1.0
1025	20		80		0.995493
1026	20	80			0.995493
1029	20		80		0.995493
1099	60			40	1.0
1115		40		60	1.0
1674	83		16		0.994512
1699		16		83	0.994512
1701	83	16			0.994512
1743		40		60	1.0
1796	11		88		0.923564
1797		11		88	0.923564
1879	85	14			0.993533
1922	33		66		1.0
1923	66	33			1.0
1925			66	33	1.0
2005		33	66		0.997452
2006		33		66	0.997452
2007		33		66	0.997452
2009	33		66		0.997452
2010		66		33	0.997452
2184	20	80			0.995493
2344	33		66		0.997452
2441	20		80		0.995493
2472	66		33		0.997452
2478	66	33			0.997452
2481			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain