SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene502

Length: 1619 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene502 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative nicotianamine aminotransferase A [Oryza sativa Japonica Group] dbj\|BAE86873.1\| nicotianamine aminotransferase [Oryza sativa Japonica Group] gb\|EAY85513.1\| hypothetical protein OsI_06890 [Oryza sativa Indica Group]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	aminotransferase family protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.6.1.8-	-	0.0	74%
Blast2go	1-aminocyclopropane-1-carboxylate synthase.	EC:4.4.1.14	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	74%
Blast2go	Biosynthesis of plant hormones	01070	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	74%
Blast2go	iron ion transport	GO:0006826	Biological Process	74%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	74%
Blast2go	nicotianamine aminotransferase activity	GO:0033855	Molecular Function	74%
Blast2go	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	74%
Blast2go	plastid	GO:0009536	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Tyrosine/nicotianamine aminotransferase	IPR005958	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE0

Fln msg: your sequence is longer than subject: 443 - 403

Fln protein: MADFKDGSRFLNSRVIVTNGIQDGDMEKREWNFRPSSPCMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGQYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYPLYEALLAYNGIEARHYNLIPERNWEIDLDHLETIADRNTVAMVLVNPNNPCGVVFSHEHLAKVAETAKQLGLLIVSDEVYAPLVFDNKPFVPMGLFATVVPVLTVGSISKRWLVPGWRLGWIVACDPNGILKETRIIEGIRNLLNVVVDPATFAQAALPNILKKTTREFYEQALQTLCQAADICYNRAQKLDVLYCLSKPQGSMFLMIKINIPCFEDINDDVEFCGKLAKEESVIVLPGSLLGMKNWIRVSFAVSPCLLEEAWDRIESFCKRHAKSTQII*

Protein Length: 444

Fln nts: CCAATCCAATCAAAACTCCAAATCAAAACTCCAACTCCTTCCA_-_ATGGCGGACTTCAAAGATGGCAGCCGCTTCCTCAACTCGAGAGTTATCGTTACTAATGGAATACAGGATGGCGATATGGAGAAGAGAGAGTGGAATTTCAGGCCGAGCTCGCCCTGTATGAGGGAAATGGCAGGGATTCGAGGCATGCTGGCTTATCTGAGGTCTCACTTAGATCCTAAAGGAAAGAGCGTGATTCCTCTCGGTTATGCTGATCCTTCTCCATTTGAATGCTACAAAGTCTCGAAGGAAGCTGAAGATTCCCTTGTAGAGGCCATTAGAAGCGGCCAGTACAATGGTTATGCTCCAGCAGTTGGCCTTCCAGAAGCGCGAAGGGCAGTGGCAGAGTATCTCTCTCCAGGGCTTCCTTACAAGCTAGGTGCAGATGATATCTACTTAACCTGTGGTTGTAGACAAGCTATGGATGTAACTGTTGCAGTCTTGGGTGGTAAAGATGCAAACATTTTGTTGCCGAGACCAGGGTATCCACTTTATGAAGCATTGTTGGCATACAATGGCATTGAAGCCAGGCACTATAATTTAATTCCAGAAAGGAATTGGGAAATTGATTTAGATCACCTTGAAACAATAGCTGACAGGAACACAGTAGCAATGGTTCTTGTCAATCCCAATAATCCTTGTGGTGTTGTTTTCAGCCATGAGCATTTAGCCAAGGTGGCAGAGACGGCAAAACAGTTAGGCTTGTTAATTGTTTCTGATGAAGTATATGCTCCCTTGGTGTTTGATAACAAGCCATTTGTACCAATGGGATTGTTTGCAACAGTTGTTCCTGTGCTTACCGTTGGAAGCATATCAAAGAGATGGCTTGTTCCAGGTTGGCGGCTGGGGTGGATTGTGGCTTGTGATCCTAATGGTATTTTAAAAGAAACAAGGATAATAGAAGGCATTAGGAATCTTTTGAATGTGGTTGTCGATCCGGCTACATTTGCACAGGCTGCGCTTCCAAATATCCTGAAAAAGACAACACGAGAATTTTATGAACAGGCATTGCAAACACTTTGTCAAGCAGCTGACATATGCTATAATCGTGCTCAGAAACTTGACGTTCTCTATTGTCTGTCTAAACCTCAGGGTTCTATGTTTTTGATGATCAAGATAAACATTCCTTGCTTTGAAGACATAAATGATGATGTTGAATTTTGTGGGAAACTTGCAAAAGAAGAATCAGTTATAGTTTTACCAGGGTCACTGCTTGGAATGAAGAACTGGATACGCGTGTCTTTTGCAGTCTCCCCATGTTTGTTGGAAGAGGCTTGGGATCGAATAGAATCCTTCTGCAAACGACATGCCAAGAGTACACAGATTATTTAG___ATGAATTAAGTGTAAATACAATGTTGGGAGACACTTCAAAATATAGGGTACTTGTTACAGATTCGGATCATCCTGACTACATATTTATGAACTCGTATTGTTTATTATCCGTAGGTAAGAGAGATTAATGGTATTTGTTGCATTTAGTGCAACTGATCTTATGGGTCAAAAATTCTGAACTTTCAACCCAATGAGTATATTATAGATGAACAGTTCTGCAATCTTCTTGCAACATTTATTTAATTTG

Fln Alignment:

Contig502___CMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGQYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYPLYEALLAYNGIEARHYNLIPERNWEIDLDHLETIADRNTVAMVLVNPNNPCGVVFSHEHLAKVAETAKQLGLLIVSDEVYAPLVFDNKPFVPMGLFATVVPVLTVGSISKRWLVPGWRLGWIVACDPNGILKETRIIEGIRNLLNVVVDPATFAQAALPNILKKTTREFYEQALQTLCQAADICYNRAQKLDVLYCLSKPQGSMFLMIKINIPCFEDINDDVEFCGKLAKEESVIVLPGSLLGMKNWIRVSFAVSPCLLEEAWDRIESFCKRHAKST
B8LLE0_____________CSHNMLGIRGVLDYVMSHLNPDGKSKIPLGHGDPSAFECFRTSIHVEDALIEAIRTGKYNGYSPADGLPQSRRVVADYLSRGFPYKLSEDDVYLTCGCSQAIDLALSVLAREGANILLPRPGFPQYEALMAYKGIEARHYDLVPERGWEVDLDQLDAIADSNTVAMVIINPSNPCGTVFTHDHLAKVAETAKRLGLLIISDEVYAHIVFGEKPFIPMGFFASTVPVLTLGSISKKWMVPGWRLGWLVTCDPHGILRKSQIIEGIKKLLNIVVDPSTIAQAALPQIIKKTTEDFDQQTLQLLSQAADICYDRIQKLNVLYCPAKPQGSMFVMVKINISSFVDIRDDIEFSAMLSKEESVIVLQGSPIGLKNWIRVTFAISPSVLEEGLDRITAFCMRHAKNT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1122	10		90		0.90298
1289		78	21		1.0
1304	11		88		0.923564
1376			83	16	0.994512
1488	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain