SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene495

Length: 1591 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative PAP-specific phosphatase [Arabidopsis thaliana] sp\|Q9M0Y6.1\|DPNPM_ARATH RecName: Full=Putative PAP-specific phosphatase, mitochondrial; AltName: Full=3'(2'),5'-bisphosphate nucleotidase; AltName: Full=3'(2'),5-bisphosphonucleoside 3'(2')-phosphoh	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	pap-specific phosphatase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%
Blast2go	chloroplast	GO:0009507	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol monophosphatase	IPR000760	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A915

Fln msg: Overlapping hits, possible frame ERROR between 219 and 212,

Fln protein: MTMKSICLPSSLPCFTRAPHIHRIRSELSxxxxGNVNYRRELEAAVDVVHKACRLCVDVQTQLFQKHGRILEKSDHTPVTVADFGVQALVSMELTRLFPSIPLVAEEDSSQLLLDLETSHQNGNNASNSLVEAVTNAVANSSSLQPDLLNYDELLKAIDRGGKETTSLEEEPATYWVLDPIDGTRGFLRGRMALYVVGLALVVEGRPILGVMGCPNWDTDNTYLPENLARGMTNKNEISDFPRTGAIMAACYGYGTWMKKLSLNTVNVDVDGSFDDWIRCSVDKCNSLQEARFCIADRETWELLPLSNTLQATSAPKGFGERWQPTIIPTCCGSLCKYFMVATGRASVFLLQVKKQPSVKVWDHAVGMICVSEAGGEVTSWDGSEMFLASDGVGRRSITPGGGGILVTNGTLHNQLLDMI*

Protein Length: 422

Fln nts: ATGGGAGGAAATGTGAAAGAAAGAAAATACCAGACATTGTAATTAAAAAACAGCGCGCAATTTACAGCCGATGCGCAGGAAGCGGACCAAGCAGACCTCGAGACGCGAAGTGCAGGGCAGATA_-_ATGACAATGAAGAGCATATGTCTGCCATCATCCCTTCCATGTTTCACTAGAGCTCCTCACATTCATCGAATCAGGTCCGAACTCTCTxxxxxxxxxxxxGGGAATGTGAATTACCGTCGAGAATTGGAAGCTGCTGTGGATGTCGTCCACAAAGCTTGCCGTCTTTGCGTCGACGTGCAAACCCAGTTATTTCAAAAGCACGGGCGCATATTGGAGAAAAGCGATCATACTCCTGTCACTGTGGCTGATTTTGGAGTTCAGGCCCTCGTTAGCATGGAACTCACCAGGTTATTCCCCTCTATTCCTTTAGTGGCGGAAGAGGATTCTAGCCAGTTGCTATTGGACCTTGAAACTTCTCACCAAAATGGAAACAATGCTTCTAATTCTCTTGTTGAGGCCGTAACCAATGCTGTTGCTAATTCTTCAAGTCTCCAACCTGATCTGCTGAATTATGATGAGCTCCTGAAAGCTATTGATAGAGGTGGAAAGGAAACAACTTCTCTGGAAGAAGAACCTGCCACTTATTGGGTACTCGATCCCATTGATGGCACTCGAGGGTTTTTAAGGGGTCGTATGGCTTTATATGTGGTTGGATTGGCTCTTGTAGTTGAAGGAAGGCCCATTTTGGGAGTTATGGGTTGCCCAAATTGGGATACAGATAACACGTACCTTCCAGAGAATCTTGCTAGAGGAATGACAAATAAAAATGAAATAAGTGACTTTCCTAGAACTGGAGCCATTATGGCTGCATGTTATGGCTATGGAACATGGATGAAAAAGCTTTCATTGAACACAGTTAATGTGGATGTAGATGGGAGTTTTGATGATTGGATCAGGTGTTCAGTGGACAAATGCAATTCATTACAGGAAGCACGCTTCTGCATTGCTGATCGTGAAACATGGGAACTCCTTCCATTGTCAAATACATTACAAGCTACTTCCGCTCCCAAAGGGTTTGGAGAGAGATGGCAACCGACAATTATACCAACTTGTTGTGGAAGCCTTTGTAAATACTTCATGGTTGCTACGGGGAGAGCTTCAGTTTTCCTGCTTCAAGTGAAAAAACAACCTTCTGTGAAGGTGTGGGATCACGCAGTTGGTATGATCTGTGTTTCTGAAGCTGGGGGAGAGGTCACTAGTTGGGATGGAAGTGAAATGTTCTTAGCAAGTGATGGTGTTGGAAGGCGAAGTATCACTCCAGGAGGTGGTGGCATACTTGTAACCAATGGGACCTTACATAATCAGTTACTTGACATGATTTAG___TCACTCCTATGAGGTTGTGGCATACTTGCAACTAGTGGGATCTACTTGACATGATTTGGTCACTCCTATGGACTTCAAGTTCCTATTTAGTGGTGGTTAATTTTGAAAGAGACTTTTTGAAAGATATAAATTGGTAGACATGTTGTATTATTTTTTGTTGTTGTCCATAATCTTCAATTTAATCCACATGAAAGGTAATTTACTTTT

Fln Alignment:

Contig495___MKSICLPSSLPCFTRAPHIHRIRSELSxxxGNVNYRRELEAAVDVVHKACRLCVDVQTQLFQKHGRILEKSDHTPVTVADFGVQALVSMELTRLFPSIPLVAXXXXXXXXXXXXTSHQNGNNASNSLVEAVTNAVANSSSLQPDLLNYDELLKAIDRGGKETTSLEEEPATYWVLDPIDGTRGFLRGRMALYVVGLALVVEGRPILGVMGCPNWDTDNTYLPENLARGMTNKNEISDFPRTGAIMAACYGYGTWMKKLSLNTVNVDVDGSFDDWIRCSVDKCNSLQEARFCIADRETWELLPLSNTLQATSAPKGFGERWQPTIIPTCCGSLCKYFMVATGRASVFLLQVKKQPSVKVWDHAVGMICVSEAGGEVTSWDGSEMFLASDGVGRRSITPGGGGILVTNGTLHNQLLDMI
D5A915_____________MKAICLPSSLPCFTRAPRIHRVRSELSxxxGNANYRRELEAAVDVVQKACRLCVD----LFQKDRGILEKSDRTPVTVADFGVQALVSMELTRLFPSIPLVAEEDSSQLLLDLETSHQHANDASNSLVEAVSNAVANSLSLQADLLNYDELLKAIDRGGKETTSLEEEPATYWVLDPIDGTRGFLRGGMALYVVGLALVVEGRPILGVMGCPNWDKDSTNIAENLARGMTNKNEITDFTRTGAIMAACYGFGTWMKMIPLNTINVDVDESHNGWIRCSVDKCDSLWEARFCIADRETWELLPLSNALEATSAPKGFGERWKPTIIPTCCGSLCKYFTVAMGRASVFLLQVKSQPSVKVWDHAVGMICVSEAGGEVTGWDGSEMFLASDGVGRRSITPGGGGILVTNGTLHNHLLDMI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1003	11			88	0.923564
1006			88	11	0.923564
1137		22		77	0.999999
1141		22		77	0.999999
1142	22	77			0.999999
1195		90		10	0.90298
1197	10			90	0.90298
1219			90	10	0.90298
1220		90		10	0.90298
1221	90		10		0.90298
1223		10		90	0.90298
1226			90	10	0.90298
1227		10		90	0.90298
1230		10	90		0.90298
1321	87		12		0.999964
1351	88		11		0.999937
1352	88			11	0.999937
1353		11		88	0.999937
1355			88	11	0.999937
1362	88		11		0.999952
1364	88		11		0.999952
1367	88	11			0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain