SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene487

Length: 1283 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene487

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CW-type zinc-finger protein [Arabidopsis thaliana] dbj\|BAC42503.1\| unknown protein [Arabidopsis thaliana] gb\|AAP21295.1\| At4g15730 [Arabidopsis thaliana] gb\|AEE83641.1\| CW-type zinc-finger protein [Arabidopsis thaliana]	-	-	2.0e-07	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%
Blast2go	zinc ion binding protein	-	-	2.44546e-40	58%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HPZ9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1353 aas, your sequence is shorter than subject: 251 - 1620

Fln protein: MLSLGSSERFEGNGVATMEDNELEEGEAYFYQEEDPNCDPDVAFSYIDAKLQEFLGHFQKEFEGGVSAENLGSKFGGYGSFLPTHQRSPSVLLQPKTPAIVQQNSTQKTPNETVVERMRSSAASTGGTAPSTKLGSAAANVSSGSAASAADIAKSGEMAGTAVKGIREISPLKKDSIAKNINIGDQKRLTLRIKMGSDSVPRSKNSAIYSGLGLENSPSPSLEDSPDDAQEFSPDIESLLLSLLSQSYKL*

Protein Length: 252

Fln nts: GCGGCATTTACGAGTATTTGAGCGGATTTACACACATTTCATTTAAATTGTCGTGGTCTAGGTAATACCAATTTTGTTGCCCGACGTGGATACCCGGCCCGCTGTTGTATCGTATTGCAGCAAATTGTTGCGGTGGGTATCAAGAAAAGAAAAGAGGGGATAGGTTGTTTCATTGCGTATGGGAGAAACTCAGGGCTGGGGAGCGGCTGAGAAATAACTGCCTCGGCCCTTGAAGAAATACCCTTGGAGAAAAATAATCAACCCGTGGAAAACCGATGCATGAACAGCAAAGACGGGAGAGAACTGTTGAATTGTGTTCGTGAATTTGATTTCCGGCGGCTTCGGCAATTAGGGTTTGTGCCCGATCCTGTGAAAAAAATTGGGGTCTTTGCCAGCCCCGATTGTGGAATTGGGGTTGCGGATCGGGGGTTTTCTGATTTAATATTGTTATAAGTTTTTGTTTGCTATGTCGGAAAGCCGATGATTTTGGGGGTCTGCAGAAGCG_-_ATGCTGTCGTTGGGCAGTAGTGAGCGTTTTGAAGGGAATGGTGTAGCGACGATGGAGGACAACGAGCTTGAAGAAGGAGAGGCCTACTTTTACCAGGAGGAAGACCCTAACTGTGACCCTGACGTGGCGTTCTCCTACATTGATGCTAAACTACAAGAATTTCTGGGTCACTTCCAGAAGGAATTTGAAGGAGGAGTCTCAGCTGAAAATTTGGGGTCAAAATTTGGAGGCTATGGCTCATTTTTGCCAACTCATCAGCGGTCTCCATCAGTTTTGCTTCAACCTAAAACTCCAGCAATTGTGCAGCAGAATAGTACACAAAAAACACCGAATGAAACAGTGGTCGAGCGCATGCGATCGTCAGCTGCAAGCACAGGAGGCACTGCCCCTTCTACAAAGCTGGGATCAGCAGCTGCCAATGTATCTTCTGGTTCAGCAGCCTCAGCTGCTGATATTGCAAAAAGTGGGGAGATGGCTGGGACTGCTGTTAAAGGCATTAGAGAAATCTCCCCTTTGAAAAAGGATTCTATAGCTAAGAACATAAATATTGGTGATCAGAAGAGGTTAACATTGCGAATTAAGATGGGTTCCGATTCTGTTCCTCGCAGCAAGAACTCTGCAATTTACAGTGGGTTAGGCCTCGAGAATTCTCCATCTCCATCACTCGAGGATAGCCCTGATGATGCCCAGGAATTCTCACCTGATATTGAATCCCTCTTGCTCTCTCTCCTCTCTCAATCATACAAATTATGACATCACATCAGATTCCGGGGGGTTC

Fln Alignment:

Contig487___MLSLGSSERFEGNGVA-----TMEDN-ELEEGEAYFYQEEDPN----CDPDVAFSYIDAKLQEFLGHFQKEFEGGVSAENLGSKFGGYGSFLPTHQRSPSVLLQPKTPAIVQQNSTQKTPNETVVERMRXXXXXXXXXXXXXKLGXXXXXXXXXXXXXXXXXXXXGEMAGTAVKGIREISPLKKDSIAKNINIGDQKRLTLRIKMGSDSVPRSKNSAIYSGLGLENXXXXXXXXXXXXAQEFSPD
F6HPZ9_____________MISVGSRDGRKGLGLGFGVGREMEDTAELEEGEAYYYKDGDDDDGASIDPDVALSYIDEKLQDVLGHFQKDFEGGVSAENLGAKFGGYGSFLPTYQRSP-VWSQPRTPAKVQNCNTPRSPNNLLVEGGRHSSAVSSSAPSSVKLG-ATSASAGALPALKATSMSDSVKRDAYIASTRAEEFTSRESANKSANQPDQKTLKVRIKVGSDNLSARKNAEIYSGLGLDGSPSSSLENSLSESDELSRD

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1076	81		18	0.999994
1187		12	87	0.992554
1223		50	50	1.0
1264		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain