SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene484

Length: 2709 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene484
CAGTGCAGCCCGCGGTTGCAATGCAGGACTAGTGCGAGCCCGAGGGTGAGGAATATTGAAAATGTTCCCTTGACTGAAGGTTCGGTTCCGTCGTCTCCCCGCTCCAGATTAAGCATGTTGAGGACCGGTATTAGGCTTTCCAGAAGTACCTGTGCAATGTGTTTGCAGACGATGAAGCCTGGACAAGGCCACGCAATATTCACTGCGGAATGTTCTCACGCGTTCCATTTTCCGTGTATTGCTTCAAATGTCAAGCACGGCAACCTGATTTGTCCCGTTTGTCGAGCAAAATGGAAGGAAGTACCGTCTCAAGCGTCGGTGAGTGCAGTCCAGAAGGATGAAAAAGCCGAAAGAGGCTCGGCATTGACCCCGAGAAGCAGCAGGAGAAACGCAACTTCTTCTTCTGAAGCCTCGGAACAAGCTGAATACAGGCGACCAGAAAGAAATTCTGAAGAATCAATTACTCCAAGAGGAACTCGTCAAATTCCTTCTTCTGAGCCCCTTTACGACGATGACGAGCCGCTCGACACGAATCTCAGGGAAAACGGCCGAACATTCAGTACTATTCACGAAGAAGAGGAGGAGTTTGAATTTAAAGGTTTCGTGGTCGAACCCGAACAAACTATGGGGTTAGTGAGCAATAATGCCAAAAACGGTGGCCTAACCAGAAATCTCGAGGTCACTTTACAGCCAGCAGTTGGAGTACTAGCAGCGGGGAAATCGTGCGAGAACTTCACAGTATTACTGCAAGTGAAAGCTCCACCTGCAATCGACAGACAGCAGAAAAACCTGAAGCAGATTTCATCTTCTTTACTGCCGGATCCTAGCTACCGTGCTCCTATTGATCTGGTAACGGTCCTGGATGTAAGCGGCAGCATGTCAGGAACCAAATTACAGCTATTAAAGCGGGCGATGAGGTTAGTAATTTCTTCACTGAGTCCGGCAGACCGGCTCTCGGTCGTCGCATTTTCTTCAACGGCTAAGCGCATGTTTCCCCTTAGGCGTATGGTTCCCAAAGGCCAGAGAGCCGTCCGTCGCGTAATCGACGGCCTCTCCTGCAGCGAGGGCACTAACATCGCCGACGGCTTAAAGAAAGCGGCCAAAATCTTAGAAGATCGGCGGGGACGGAACCCGGTGGCTTCCATCATGCTGCTCTCGGACGGGCAAGACAAGAACAGCATAAGCACGCTACAGAATCGACAAACCCTGCCCGGATCCATCAGACAGAGCACACGCTACGGCCACATTGAGATCCCCGTGCACGCTTTCGGCTTTGGAAATGACCACGACGCGGCCAAGATGCACACCATTTCGGAGGAATCCGGCGGTACATTTTCCTTCATTAAGGCCGAAGCTTCAGTCCAAGACGCCTTCGCCGAGCGCATCGGGGGCTTACTGAGTGTGGTCGCACAGGACGTGCAGTTGACGCTTTCTTGCTCCTCGGCTCCAGGCGTCGAACTGCGAAACATACACGCCGGAAGCTGCCAGACCAGGGTTTTGGATGATTACGGCACCGTCAAATTGGGGGATCTTTACGCCGAAGAAGACAAAGACATCATCGTCGAGCTAAAAATCCCGGCCGTCAAATATCCAAACCCCATGGCTGTCCTCGGTGTAAAATGCTCCTTCAAGGATCCAGTCTCGCAGCAAACAATGTATGCCAAAGAACAGATTCTGATCATCCCTCGCCCTGACAGCGTCCGTGGATATCCCACGTCCGTCAGCCTCGAGGTCGAGAAGCGCAAGAATAGAGTGCGCACTGAGCAGGCCATCGCCGAGGCTCGAACCCTGGCCGACTCCGGCGACACCAATGGCGCGCAACAGGTCCTCTACAACGCCAAAGCCCTGCTGCAGTGTTCTCCCGTGTCTCGAACCGGCGACGAGTTGAGAAGCGCTGTGGAGGCGGAGATTGCAGAAATTCAGGCGAAAGTGAGGCAAAATTTCACTTACGAGAGGGAGCTGAGATCGGCTGAGATCCCTCGCGAGCGGCAGCCTAGATCGACTAGCAGTAATTATAATGAGCGTCAAAGATCCAGCAACGGTTACAGAAGGATAGATTACGAGCCTACGACGCCCTCAATGCTAGACATCGTCATGCGTTTGCAGACCGATAACGATGAGCCGCTCACTCCCACTTCGGCCTGGAGGGCCGCAGAGAAGCTGGCCAAGGTTGCCATGATGCGCAAATCTTTGAATCGGGTCAGTGATTTGCACGGCTTTGAGAACGCAAGATTTTAATTTTCTCTAACTCATTTGTCCTTTCACTTCTGCTTCCCTTCCCTTACCTTGATTGAATGAATGAATGAATGTATGAATAAAAGAAGATATCAAGGCTTGCCAATGTCCGTGGAGATATTGGAAATTCCGTGCTGTATCCCTGTAGACTCATCAAACAACCAGCAGCTGGTTTTTCCTTTACTGGATGAATTATTTGTTATGGAATTTGTGAATTTTCTAAGATGTGTACAAAAGATATTTACAGGTATGTAATCATTTCAGAGGTACGTCACCGCTCCTCCTCCTCCGTTGTAGTAATGTACTGGAGGAGTGAGTTGAAGTCGTGTTGCCTGTCATCGATGCAGGTAGGCAGTGATCAAACTTCCATATAAATGTAGATGAATTATGTGATGATATTTACAGTCAAGCCTCACAAAAGCTTGATGGTTTGCTTTTGCATGCTTTCTATTTCTCCCAAATAAAACGATATAG

Ace file of the UniGene sp_v2.0_unigene484 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Q1_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein binding	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: your sequence is shorter than subject: 746 - 829

Fln protein: QCSPRLQCRTSASPRVRNIENVPLTEGSVPSSPRSRLSMLRTGIRLSRSTCAMCLQTMKPGQGHAIFTAECSHAFHFPCIASNVKHGNLICPVCRAKWKEVPSQASVSAVQKDEKAERGSALTPRSSRRNATSSSEASEQAEYRRPERNSEESITPRGTRQIPSSEPLYDDDEPLDTNLRENGRTFSTIHEEEEEFEFKGFVVEPEQTMGLVSNNAKNGGLTRNLEVTLQPAVGVLAAGKSCENFTVLLQVKAPPAIDRQQKNLKQISSSLLPDPSYRAPIDLVTVLDVSGSMSGTKLQLLKRAMRLVISSLSPADRLSVVAFSSTAKRMFPLRRMVPKGQRAVRRVIDGLSCSEGTNIADGLKKAAKILEDRRGRNPVASIMLLSDGQDKNSISTLQNRQTLPGSIRQSTRYGHIEIPVHAFGFGNDHDAAKMHTISEESGGTFSFIKAEASVQDAFAERIGGLLSVVAQDVQLTLSCSSAPGVELRNIHAGSCQTRVLDDYGTVKLGDLYAEEDKDIIVELKIPAVKYPNPMAVLGVKCSFKDPVSQQTMYAKEQILIIPRPDSVRGYPTSVSLEVEKRKNRVRTEQAIAEARTLADSGDTNGAQQVLYNAKALLQCSPVSRTGDELRSAVEAEIAEIQAKVRQNFTYERELRSAEIPRERQPRSTSSNYNERQRSSNGYRRIDYEPTTPSMLDIVMRLQTDNDEPLTPTSAWRAAEKLAKVAMMRKSLNRVSDLHGFENARF*

Protein Length: 747

Fln nts: CAGTGCAGCCCGCGGTTGCAATGCAGGACTAGTGCGAGCCCGAGGGTGAGGAATATTGAAAATGTTCCCTTGACTGAAGGTTCGGTTCCGTCGTCTCCCCGCTCCAGATTAAGCATGTTGAGGACCGGTATTAGGCTTTCCAGAAGTACCTGTGCAATGTGTTTGCAGACGATGAAGCCTGGACAAGGCCACGCAATATTCACTGCGGAATGTTCTCACGCGTTCCATTTTCCGTGTATTGCTTCAAATGTCAAGCACGGCAACCTGATTTGTCCCGTTTGTCGAGCAAAATGGAAGGAAGTACCGTCTCAAGCGTCGGTGAGTGCAGTCCAGAAGGATGAAAAAGCCGAAAGAGGCTCGGCATTGACCCCGAGAAGCAGCAGGAGAAACGCAACTTCTTCTTCTGAAGCCTCGGAACAAGCTGAATACAGGCGACCAGAAAGAAATTCTGAAGAATCAATTACTCCAAGAGGAACTCGTCAAATTCCTTCTTCTGAGCCCCTTTACGACGATGACGAGCCGCTCGACACGAATCTCAGGGAAAACGGCCGAACATTCAGTACTATTCACGAAGAAGAGGAGGAGTTTGAATTTAAAGGTTTCGTGGTCGAACCCGAACAAACTATGGGGTTAGTGAGCAATAATGCCAAAAACGGTGGCCTAACCAGAAATCTCGAGGTCACTTTACAGCCAGCAGTTGGAGTACTAGCAGCGGGGAAATCGTGCGAGAACTTCACAGTATTACTGCAAGTGAAAGCTCCACCTGCAATCGACAGACAGCAGAAAAACCTGAAGCAGATTTCATCTTCTTTACTGCCGGATCCTAGCTACCGTGCTCCTATTGATCTGGTAACGGTCCTGGATGTAAGCGGCAGCATGTCAGGAACCAAATTACAGCTATTAAAGCGGGCGATGAGGTTAGTAATTTCTTCACTGAGTCCGGCAGACCGGCTCTCGGTCGTCGCATTTTCTTCAACGGCTAAGCGCATGTTTCCCCTTAGGCGTATGGTTCCCAAAGGCCAGAGAGCCGTCCGTCGCGTAATCGACGGCCTCTCCTGCAGCGAGGGCACTAACATCGCCGACGGCTTAAAGAAAGCGGCCAAAATCTTAGAAGATCGGCGGGGACGGAACCCGGTGGCTTCCATCATGCTGCTCTCGGACGGGCAAGACAAGAACAGCATAAGCACGCTACAGAATCGACAAACCCTGCCCGGATCCATCAGACAGAGCACACGCTACGGCCACATTGAGATCCCCGTGCACGCTTTCGGCTTTGGAAATGACCACGACGCGGCCAAGATGCACACCATTTCGGAGGAATCCGGCGGTACATTTTCCTTCATTAAGGCCGAAGCTTCAGTCCAAGACGCCTTCGCCGAGCGCATCGGGGGCTTACTGAGTGTGGTCGCACAGGACGTGCAGTTGACGCTTTCTTGCTCCTCGGCTCCAGGCGTCGAACTGCGAAACATACACGCCGGAAGCTGCCAGACCAGGGTTTTGGATGATTACGGCACCGTCAAATTGGGGGATCTTTACGCCGAAGAAGACAAAGACATCATCGTCGAGCTAAAAATCCCGGCCGTCAAATATCCAAACCCCATGGCTGTCCTCGGTGTAAAATGCTCCTTCAAGGATCCAGTCTCGCAGCAAACAATGTATGCCAAAGAACAGATTCTGATCATCCCTCGCCCTGACAGCGTCCGTGGATATCCCACGTCCGTCAGCCTCGAGGTCGAGAAGCGCAAGAATAGAGTGCGCACTGAGCAGGCCATCGCCGAGGCTCGAACCCTGGCCGACTCCGGCGACACCAATGGCGCGCAACAGGTCCTCTACAACGCCAAAGCCCTGCTGCAGTGTTCTCCCGTGTCTCGAACCGGCGACGAGTTGAGAAGCGCTGTGGAGGCGGAGATTGCAGAAATTCAGGCGAAAGTGAGGCAAAATTTCACTTACGAGAGGGAGCTGAGATCGGCTGAGATCCCTCGCGAGCGGCAGCCTAGATCGACTAGCAGTAATTATAATGAGCGTCAAAGATCCAGCAACGGTTACAGAAGGATAGATTACGAGCCTACGACGCCCTCAATGCTAGACATCGTCATGCGTTTGCAGACCGATAACGATGAGCCGCTCACTCCCACTTCGGCCTGGAGGGCCGCAGAGAAGCTGGCCAAGGTTGCCATGATGCGCAAATCTTTGAATCGGGTCAGTGATTTGCACGGCTTTGAGAACGCAAGATTTTAA___TTTTCTCTAACTCATTTGTCCTTTCACTTCTGCTTCCCTTCCCTTACCTTGATTGAATGAATGAATGAATGTATGAATAAAAGAAGATATCAAGGCTTGCCAATGTCCGTGGAGATATTGGAAATTCCGTGCTGTATCCCTGTAGACTCATCAAACAACCAGCAGCTGGTTTTTCCTTTACTGGATGAATTATTTGTTATGGAATTTGTGAATTTTCTAAGATGTGTACAAAAGATATTTACAGGTATGTAATCATTTCAGAGGTACGTCACCGCTCCTCCTCCTCCGTTGTAGTAATGTACTGGAGGAGTGAGTTGAAGTCGTGTTGCCTGTCATCGATGCAGGTAGGCAGTGATCAAACTTCCATATAAATGTAGATGAATTATGTGATGATATTTACAGTCAAGCCTCACAAAAGCTTGATGGTTTGCTTTTGCATGCTTTCTATTTCTCCCAAATAAAACGATATAG

Fln Alignment:

Contig484___SPRLQCRTS-------ASPRVRNIENVPLTEGXXXXXXXXXXXXXR---TGIRLSRSTCAMCLQTMKPGQGHAIFTAECSHAFHFPCIASNVKHGNLICPVCRAKWKEVPSQASVSAVQKDEKAERGSALTPRSSRRNXXXXXXXXXXXEYRRPERNSEES---ITP------------RGTRQIPSSEP-LYDDDEPLDTNLRENGRTFSTIHXXXXXXXXXXXXXXXEQTMGLVSNNAKNGGLTRNLEVTLQPAVGVLAAGKSCENFTVLLQVKAPPAIDRQQK-NLKQISSSLLPDPSYRAPIDLVTVLDVSGSMSGTKLQLLKRAMRLVISSLSPADRLSVVAFSSTAKRMFPLRRMVPKGQRAVRRVIDGLSCSEGTNIADGLKKAAKILEDRRGRNPVASIMLLSDGQDKNSIST----LQNRQTLPGSIRQSTRYGHIEIPVHAFGFGNDHDAAKMHTISEESGGTFSFIKAEASVQDAFAERIGGLLSVVAQDVQLTLSCSSAPGVELRNIHAGSCQTRVLDD--YGTVKLGDLYAEEDKDIIVELKIPAVK-YPNPMAVLGVKCSFKDPVSQQTMYAKEQILIIPRPDSVRGYPTSVSLEVEKRKNRVRTEQAIAEARTLADSGDTNGAQQVLYNAKALLQCSPVSRTGD-ELRSAVEAEIAEIQAKVRQNFTYERELRSAEIPRERQPRSTSSNYNERQRS-SNGYRRIDYEPTTPSMLDIVMRLQT---------DNDEPLTPTSAWRAAEKLAKVAMMRKSLNRVSDLHGFEN
C0PS55_____________SPRENCQPLDSPSSDVQSPRLRNIQTAVSPEAVSKSSSPRSPSRLNLIRNGIRTPKGCCAICLETMKPGHGHAIFTAECSHSFHFPCIASNVRHGNLICPVCRAKWKEVPWQVPV--VEAENTDIGTTATTPTVRNGNLQIRRRPNNVRDDEAALRTAEEEQRRLDPVLRILDDSIASFRGHRQSCSQEPTVYDDDEPLDSNLRPNEGQTSLLTDDDREFEFKGLFVDHEGTSDRAAGNA------RKMRIALYPEVEAVAAGEACENFTVLVHVKAPSASEASKKQNYEDCEGNMVKDPGCRAPIDLVTVLDVSGSMSGTKLALLKRAMAFVISNLSPEDRLSVVVFSSTAKRVFSLKRMTPDGQRAANRVVERLLCTGGTNIAEGLRKGAKVLEDRRQRNPVASIMLLSDGQDTYSLSSRGVVLFPSDEQRRSARQSTRYGHVQIPVHAFGFGVDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTV--SACAGTKLKSFHAGSYETCVAEDGSHGTVNLGDLYAEEERDILVELKFPAVKSASNPMNLISVGCFFKDPVSQRSFHSREQSFSILRPESTDGLPVALNLEVEKERNRLRTAQAIAEARTLADQGDMSGAQRVLQNAKIELQ---QTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQ------SSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATASSNPASISTATSISARRTSEKLAKIAMLRKSCARVSDLHGFEN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1863	25		75		0.996473
1866		75		25	0.996473
2025	80		20		0.995493
2174	80		20		0.995493
2468	87			12	0.992554
2472	85		14		0.993533
2475		85	14		0.993533
2478	14		85		0.993533
2480	85	14			0.993533
2481	85	14			0.993533
2484			14	85	0.993533
2486			85	14	0.993533
2487	85	14			0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
185	197	GGA GGA GGA GGA G	13
401	418	CATT CATT CATT CATT CA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain