SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene455

Length: 1804 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene455 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TXI3_PHYPA	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	cyclin d3-like protein	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin D	IPR015451	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Y7

Fln msg:

Fln protein: MCSVIDSLLCKEEIGGSPWSEDDGGCVDPFDSSEEVLRCTYSPLEFVEDDETLAILLAKETSFMPGHEYLRHLLFTDLRLRVDRCRAVQWMLKVGLRFNFNPHTISLAANYFDRFVAKSLEKPWKPWMIELLTVGCISIAAKLEEVHVPLLQDLQVEGMDYTFNSTAIRRMELTILSTLEWRMNSVTAFSYSDTMLQYLGLSSSIQAFLHVRVTELLLQSLAVVEFLEYGPSVLATLSLYCALEELIPIQADLHKTKLSKFISVDKQKLQDCYEIMEELVVDPLCPTLSSDSKSPASPVTITEIAADGNAVLHRGTDISKYINNANAVVMYRRRSNSGQPVCNCLSPHRNSRKRIKLTPDSPHGFSS*

Protein Length: 369

Fln nts: AACTGGCCTTTCTACACTTTCTTTCTTTTTTCATTAAAGGTTGGCTTCGGCATTCGTTCCACGATCGCTGGAGGAGCCAGGACGTACTGAGCGTCTGCCATGGCTGCATTCCATTGATAAGTCGTTAGCATTGGGGTTCGTTCAAGAAAGGAAAGATCGTGGTAGCGTCACGCGTACAGTCGAGGCCTGGATTAGCAAGA_-_ATGTGCAGCGTCATCGACAGCCTGCTGTGTAAAGAAGAAATTGGTGGAAGTCCGTGGAGTGAAGACGATGGAGGTTGCGTCGATCCGTTTGATTCGAGCGAGGAAGTTCTTCGTTGTACGTATTCGCCTTTGGAATTTGTGGAAGATGATGAAACGCTTGCGATTTTGCTAGCCAAGGAGACGAGTTTCATGCCGGGACATGAATATCTGAGGCATTTGCTGTTCACTGACCTCCGACTGCGCGTCGATCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTCTCCGTTTTAACTTCAATCCGCATACCATTAGCTTGGCAGCTAATTATTTCGACCGGTTTGTGGCAAAGAGCCTCGAAAAGCCATGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGCTGTATATCCATTGCCGCAAAGCTGGAGGAAGTGCATGTCCCACTTCTGCAAGATTTACAGGTCGAAGGAATGGATTACACGTTCAATTCAACGGCGATACGACGCATGGAACTTACAATCTTAAGCACACTCGAATGGAGAATGAATTCCGTTACAGCATTCTCTTATAGCGATACAATGCTTCAATATTTAGGCCTGTCTTCGAGCATTCAAGCCTTCTTACATGTTCGCGTAACAGAGTTGCTGCTGCAGAGTCTTGCCGTAGTCGAGTTTCTGGAATATGGACCGTCAGTGCTAGCAACTTTATCTCTGTACTGTGCATTGGAGGAATTGATCCCTATACAAGCAGATTTGCACAAGACAAAACTAAGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAAGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCTTTGTCCGACATTGTCCTCAGACTCCAAATCCCCGGCGAGCCCCGTCACAATAACAGAAATTGCTGCCGATGGAAATGCAGTCTTACACAGGGGCACCGATATATCGAAATACATAAATAATGCAAATGCAGTAGTAATGTATAGGCGCCGTTCGAATTCAGGCCAACCTGTCTGCAATTGCCTCTCTCCCCACAGAAATTCAAGGAAAAGAATCAAACTGACGCCGGACTCTCCGCATGGATTTTCATCTTGA___CTCCACGGAGATTCAGCAGAAAAGGCTATGCACCTCGGAATAGTATTATCCTGGTAATGATCATTCAAAATATTGTTTTATTTTCCGCTTCAAAGATTTGACATCTCCATGCTGGTAATAATCACCGGGCCGCGTGTTGCACGAAGCTATGGTGAAAGGGCAAAAGAATAAGCCCGCTTTTGATGAAGTACATGGCTACGGATTGCTATCACATGGCTTTTTAGCTGTAAGAAGTGTTGCAGCTTCTCGTGAAATTGAATTGGACGTTGCAGTCGTCGAGGGTGAGTTGTCTGCCAGATTACGGTCAAAACGATTTGTCTCCATTTCCCATCGCCATCGATGCTAAAATAATATCTTGTTTCACAGTTTCAGGTTTATTCCGGTGTGTGATCACTATTCACAGTTTAAGCTTTATCCGGTGTGATGTAACTAAGACCGTTTTCAATATGTTTGTGTCCCTCGATTATTTTACGAAGTATATATATATGAGATTAATTAAC

Fln Alignment:

Contig455___IDSLLCKEEIGGSPWSEDDGGCVDPFDSSEEVLRCTYS------PLEFVEDDETLAILLAKETSFMPGHEYLRHLLFTDLRLRVDRCRAVQWMLKVGLRFNFNPHTISLAANYFDRFVAKSLEKPWKPWMIELLTVGCISIAAKLEEVHVPLLQDLQVEGMDYTFNSTAIRRMELTILSTLEWRMNSVTAFSYSDTMLQYLGLSSSIQAFLHVRVTELLLQSLAVVEFLEYGPSVLATLSLYCALEELIPIQADLHKTKLSKFISVDKQKLQDCYEIMEELVVDPLCPT---LSSDSKSPASPVTITEIAADGNAVLHRGTDISKYINNANAVVMYRRR
D5A9Y7_____________VPNLLCAEDASVVAWDDDDDD-MDENVNNESI--CLHSSDLEGFPDLPTEDDESISFLVEKECDHMPQDGYLQRFQSRTLDVSV-RQDGLSWILKVHAYYNFGPLTAYLAINYLDRFLSSYQMPQGKAWMLQLLSVSCLSLAAKMEETHVPLLLDLQIEDAKYVFEARTIERMELLILTTLKWRLRSITPFSFLHYFVHRAAGDQSPPRALITRSIELIVATIRVIHLVGHRPSSIAAAAVMCAAEEVVPLLALDYKRALCR-ASEHKETIYSCYTVMQEMLIDRIWTSKKRTSGTLSSFLSPVGVLDAAC---LSCNSESSIASFTSNPSAITGTKRR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1665	90	10			0.90298
1666	90	10			0.90298
1668		10	90		0.90298
1670	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain