SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene453

Length: 1847 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene453 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	3.0e-18	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	regulator of chromosome condensation repeat-containing protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAZ2

Fln msg: your sequence is longer than subject: 422 - 390

Fln protein: AMPLSCQTELVNRCRGNWKLVLRFLQSVHQAFASVDTPKGNVQVTTGKYHTLLVEDGSLYTCGSSICGVLGHGPEITQCGALTRVEFPLGLSVAQVSGSHNHAALVTQNGEVFTWGDNSSFCCGHGEVGCVIFKPTRVEALKGIFCKQVATGLSFTVILTRHGQVYTCGSNSHGQLGHGDTLERPIPRKVERFSSLGPVVQISAGVSHTMAVTEDGTLYSFGYGSNFCLGHGDPRDVLQPQAVQAFKRNNVHVIRVSAGDEHSVALDSNGYVHTWGKGYCGALGHGDENDKTVPEFVAILKEHRAVQVCARKRKTFVLSDDGLVFAFGWMAFGSLGFVNRGISDKVVSPQMLETLKGYHVSQVSTGLYHTVVATNKGLVFGFGDNERAQLGQDSLRQCLEPREIKMRDILEEESGTGIVTV*

Protein Length: 423

Fln nts: GCGATGCCGTTGTCTTGCCAGACCGAGCTTGTGAACCGATGCAGAGGGAATTGGAAGCTCGTTTTGAGGTTTCTGCAATCTGTGCACCAAGCCTTTGCCTCGGTGGACACTCCAAAAGGCAATGTCCAAGTTACCACTGGAAAATATCACACGCTTCTGGTTGAAGATGGGTCATTGTATACATGTGGATCAAGTATATGTGGAGTTCTGGGGCATGGGCCAGAAATCACTCAGTGTGGGGCATTGACTCGGGTTGAATTTCCCTTGGGTTTGAGCGTGGCTCAAGTATCAGGCTCTCATAATCATGCTGCTCTTGTGACTCAGAATGGAGAAGTTTTTACGTGGGGAGATAACTCTTCTTTTTGTTGTGGCCATGGAGAAGTCGGGTGTGTTATTTTCAAACCTACACGTGTTGAAGCTCTCAAGGGGATCTTTTGCAAGCAGGTTGCAACAGGTCTCAGTTTCACTGTCATTCTTACAAGGCATGGCCAAGTTTACACATGCGGCAGTAACTCACATGGTCAGTTGGGGCATGGTGATACTCTAGAGAGACCTATTCCAAGGAAGGTTGAGAGATTCAGTAGTCTTGGTCCTGTTGTTCAAATTTCTGCAGGTGTCAGTCATACTATGGCAGTTACTGAGGATGGTACATTATATTCTTTTGGTTATGGTTCCAATTTCTGTCTTGGCCATGGTGATCCACGAGATGTGCTGCAACCACAGGCAGTTCAAGCTTTCAAAAGGAATAATGTTCATGTAATTCGTGTATCTGCTGGAGATGAACATTCGGTTGCACTCGACTCTAATGGATATGTGCATACATGGGGGAAAGGTTATTGTGGAGCCTTGGGGCATGGTGATGAGAATGATAAGACGGTTCCAGAATTTGTGGCCATTCTTAAGGAGCATCGGGCAGTGCAGGTTTGTGCCAGGAAGAGGAAGACCTTTGTTCTCTCTGATGATGGGTTGGTATTCGCTTTTGGATGGATGGCTTTTGGAAGCTTGGGATTTGTGAATAGAGGTATTTCGGACAAAGTTGTAAGTCCACAAATGCTTGAAACACTGAAGGGTTATCACGTTTCTCAAGTAAGCACTGGGCTGTATCACACAGTTGTGGCTACAAACAAGGGTTTGGTTTTTGGTTTTGGAGACAATGAGAGGGCACAGCTTGGGCAAGATTCCTTGAGGCAATGTCTGGAACCAAGAGAGATTAAGATGAGGGATATACTGGAAGAGGAATCTGGGACAGGTATTGTAACTGTTTAA___ACATCGGAAATGGCAGGTGCTTATGGAAATATCTCTTGCCTCATAAGAAATTCCAATTTCCAAACACAAAACACACAATGTTCAGTGTGTTCTAAAAGGAGCTCATCATGTTGAGCTCCTCATATAGTGTAAATTAAAATGGATATTTTCATTGGATAAACTGTGGGAGAAGGTTCTGGGGTATTATCGGGGGAAAGCTTCTGACAGAGTAAGCATAATGTATCTGCAAGTTCTGACAATTCAGATCCTATTTTAGAATGTTGCAGAGCTTTGGGTAGATTCAAGTGAAAGGTATTTCCAATTGTCAATTATCCAGATAAAATTGTCCGTTTCAAGTTGCTGGGAATGCATCAGGTTGTATCCATGCATCTTGTTGAGGTGGCAATTTTCTTCAGCATTAAAATATAGATAATCTATTATTTTCAGTCCATGCAGCATGAAAATAGAGAATGTGGTCCTGATATTTTGGATTGTATATAATTTTGCTCCAAAATCGGGATGGAAAGAATGTAGTATTTGTTTGCATTCCTTGTAATATTGCAAAATGTTATATTTTTTTCCATAAAAAATAGACCGCATGG

Fln Alignment:

Contig453___NVQ-VTTGKYHTL-LVEDGSLYTCGSSICGVLGHGPEITQCGALTRVEFPLGLSVAQVSGSHNHAALVTQNGEVFTWGDNSSFCCGHGEVGCVIFKPTRVEALKGIFCKQVATGLSFTVILTRHGQVYTCGSNSHGQLGH------GDTLERPI----PRKVERFSSLGPVVQISAGVSHTMA
D5AAZ2_____________NVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRSQPVP-VQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGDDKSSKMVPQKVHLLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEVPIGIRPPKNAAENSGCWFVKLVACGGRHTLA

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1044	90			10	0.90298
1045		10	90		0.90298
1048	10			90	0.90298
1050	10		90		0.90298
1249	90		10		0.90298
1263	90		10		0.90298
1264		90		10	0.90298
1265		10		90	0.90298
1271	90	10			0.90298
1272			10	90	0.90298
1279	88		11		0.923564
1327		88	11		0.923564
1332	11			88	0.923564
1333		11	88		0.923564
1336		11		88	0.923564
1337		11		88	0.923564
1339	11	88			0.923564
1340			11	88	0.923564
1342		88		11	0.923564
1344	11		88		0.923564
1347		11		88	0.923564
1411		83	16		0.994512
1568		87		12	0.992554
1607	16	66			0.988813
1654	66		33		0.997452
1655	33	66			0.997452
1656			33	66	0.997452
1660		33		66	0.997452
1661	33	66			0.997452
1662		66	33		0.997452
1663	66	33			0.997452
1666	33			66	0.997452
1668			33	66	0.997452
1669	66			33	0.997452
1670		33		66	0.997452
1673	66		33		0.997452
1675		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain