SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene446

Length: 1364 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene446

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	APO protein 1 [Arabidopsis thaliana] gb\|AEE34293.1\| APO protein 1 [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	apo protein 1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression	GO:0010468	Biological Process	76%
Blast2go	chloroplast organization	GO:0009658	Biological Process	76%
Blast2go	Group II intron splicing	GO:0000373	Biological Process	76%
Blast2go	photosynthesis	GO:0015979	Biological Process	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3		IPR008512	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9B9

Fln msg: Separated hits, possible frame ERROR between 230 and 262, your sequence is shorter than subject: 340 - 442

Fln protein: KEKKRKLEGTSHEERVLEPPENGLLVPELIPVAHDVLEARKILIKNILKLLDVIPVIACRYCSEVHIGSVGNEIRxxxxxxxxxxxxNSSHVWMKGYIDDILVPIECFHLFDRLGKHINHERRFEVDRIPAVVELCIQAGVDLPEYPTRRRVKPVRMIGKRVLDPDGIMDEPKHTKQGGLSEELDPCGIRPQTNPPPLSSQEIQEAAECALQAWDTMRGGAGKLLKKYPVKACGYCSEVHVGPWGHRVKLCGAFKHQWRDGKHGWQEATLDELIPPNYVWHVCDLAGPPLSNDLKRFYGKAPAIVELCVQAGATIPERYKAMMRLDIVIPDSQEAEMVA*

Protein Length: 341

Fln nts: AAAAAGAAAAGAAGAGAAAGCTAGAGGGAACAAGCCATGAAGAAAGAGTTCTGGAGCCTCCAGAAAATGGATTATTGGTTCCTGAATTAATACCAGTTGCACATGATGTCTTGGAAGCAAGAAAAATCTTGATAAAGAATATTTTAAAGCTTCTAGATGTGATTCCTGTCATTGCCTGCAGATACTGCTCAGAGGTTCACATTGGTTCAGTTGGAAATGAGATCAGAACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATTCATCACATGTCTGGATGAAAGGTTATATTGATGACATTCTTGTTCCTATTGAGTGCTTTCACCTTTTTGATCGTCTTGGAAAACACATTAATCATGAGAGGAGGTTTGAAGTAGATAGAATACCAGCAGTTGTAGAGCTTTGCATCCAAGCAGGTGTGGATCTTCCAGAATACCCAACAAGGAGGAGAGTAAAACCAGTGCGTATGATTGGAAAAAGGGTATTAGACCCTGATGGCATTATGGATGAACCTAAACACACAAAGCAAGGAGGACTAAGTGAGGAATTGGATCCATGTGGAATACGCCCACAAACCAATCCTCCACCTCTATCTTCACAGGAAATCCAGGAAGCTGCAGAATGTGCACTTCAGGCATGGGATACAATGAGAGGTGGAGCTGGGAAACTTCTAAAGAAGTATCCTGTCAAGGCATGTGGGTATTGTTCAGAAGTTCATGTTGGCCCATGGGGACACAGGGTCAAACTTTGTGGAGCTTTTAAGCATCAGTGGCGTGATGGAAAGCATGGTTGGCAGGAAGCAACTCTTGATGAACTGATACCTCCAAATTATGTCTGGCATGTCTGTGATTTGGCTGGACCTCCTTTAAGCAATGACCTGAAGCGATTTTATGGTAAAGCACCTGCTATAGTGGAGCTTTGTGTGCAGGCAGGTGCAACAATACCTGAGCGATACAAAGCCATGATGAGGCTGGATATTGTCATTCCAGATTCCCAAGAAGCAGAAATGGTTGCCTAATGGTTACTAAATGAATTCGAGCTAGTTTCTACATCTTATATAGTGTATATGTTTCTTGGAGTTGGTTGTTGATGGCTTATTAACTTCATTATTTCAGGATATAACATAGGGAGTTGGTTGAAACCTTGGAAACTCACAAATACATTCTCGTATGGGCCTTTAGGATGAGAACCCTATTCTGACACTGTATATAATGCTGATTATTATACAGTATGGTTTACAAATTATTCATCTGATTTACATTCGCACATTCATAAGATCACCATGGAAACATTCACAGATTATACTCTACATGCTTCTTTGCAACCTTCCCTATGCATTGGAACAACAGTGGAATCATTTTC

Fln Alignment:

Contig446___ERVLEPPENGLLVPELIPVAHDVLEARXXXXXXXXXXXDVIPVIACRYCSEVHIGSVGNEIRTxxxxxxxxxxxNSSHVWMKGYIDDILVPIECFHLFDRLGKHINHERRFEVDRIPAVVELCIQAGVDLPEYPTRRRVKPVRMIGKRVLDPDGIMDEPKHTKQGGLSEELDPCGI-----RPQTNPPPLSSQE-IQEAAECALQAWDTMRGGAGKLLKKYPVKACGYCSEVHVGPWGHRVKLCGAFKHQWRDGKHGWQEATLDELIPPNYVWHVCDLAGPPLSNDLKRFYGKAPAIVELCVQAGATIPERYKAMMRLDIVIPDSQEAEMVA
D5A9B9_____________ERVLQRPENGLLVRRLVPVAHQVYQAKTALYEGVAKLVDVIPVQACRNCSEVHIGSQGHQLKTxxxxxxxxxxxSKKHVWRKGTVDDILVTVESFHLYDRVGRAVTHKERFMVDRLPAIIELCIQAGLDLPDFPTKRRAYPVYMVAGKIVDFEKC-SPPKDSNSMDVDEDFESRDFWDSKKQPKRDESPLSTAEDIQRMAQQTLEAWEDMKSGARKLMEKYAVKTCAYCPEVQVGPKGHRARICQAHKHQWRDGQHGWQEATFDDLIPPKYVWHVRDPNGPPLENKMRKYYGMAPAVVELCVQGGATVPDEYKSMMRLDVTIPDFEEIKFVA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1060	85	14			0.999981
1138	10			90	0.90298
1160	66	33			1.0
1194	23	69		7	1.0
1308	33			66	0.997452
1321			33	66	0.997452
1326	66			33	0.997452
1327		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain