SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene426

Length: 2024 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene426
ACTAAATGCTCTGCTGGTGCTCAGGAGGAAAAGGAAGCTCCCTGGACATGGCAGCCACAGCCATGCAAATTACACAGCTTGCATTTTGAAAAGTACAGTGATCGCCATTAATGTAAGCAGCGTGGAAGGCCTCGGCAGAGAAACTCATTTCTGTTCCTACAGAGTAAGCTTAAAGAATGGAGCTGGTCCGCTGGAACTGTGTGCATATTTACAATTCTTCATCCTCTCTCCTGCAAACAAAAGTGGCCATTAATTGCAAAATGAAAGGCAATCTACACCTACCCAAGCCTCTATCACTGTCCAGGAAATGGATTTGCAGCCTAAGTCACAGCAAAAACATGGATGCACAGGTTAATTATTTGAAGGAAGGAGGAAAATTGTTGTGGGTAATTGTTACAGGATTCGTCCTATGTTTTGGTACTCCTGTCTGCAATGATTCAGCTCTCGGGCAGACACTGGGACTTGGCTCAGTCTCAAGAGATGGTGGACAGGTGCAAGGAAGAGATGTGAATGGATACAGGGGCAAAGAAAAGCGCAATTACCAATGAGGGTATCGTGGAGGAAGCTTGGCTGGTCGTGAATGAGAACTCATTTTAGATGCACGTCACCATACTTGGTCCGCTGAAGCCTGGCTGAAAAAGAAGGAAGAGGCACTTAGTAGGCCTATTCAGACTAGATCAACGGCCCATGACATTATCAGAAGAATGTTAGCCACCTTAGATGACCCATATACACGTTTTCTGACTCCCTCAGAGTTCACAAAGTTGGCTCGATATGATATGTCAGGCATTGGCATTAACTTCAAGGAAGTCTCCAATGCAGATGGTGTGACCAAGTTGAAAGTTTTAGGGATTATCTTAGGAGGCCCTGCTCATTCAGCGGGTGTCAAGCAGGGTGATGAGATTTTGTCAGTTAATGGAAAAAGTGTGGAAGGGATGACATCATCTGATGTTGCTTCTCTAATTCAAGGTCCCAAGGAAACATTTGTCTCACTTGAGGTTAAGCATGGGGATTGTGGCGACACCCAAAATGTTATGATTGAACGGCAACAAGTAGTTCGAACTCCAGTTTTTTATCGTTTGGAGAAGGATGAAAATGGAAATGCTGATATGGGCTATATACGGCTCAAAGAGTTCAATGCATTGGCAAGGAGAGATTTAACTACAGCTATGCGACGCCTCAAAGATGCAGGTGCATCTCACTTTGTGTTAGACCTACGAGATAATCCTGGGGGCTTAGTGCAGGCAGGTATTGAGATTGCCAAGCTATTTTTGGAAGGGGGAGACACTGTATTATATACCATTGGACGAGATCTTGATTCACAGAATAGCGTCCTTGCTGAAAGACCTATGTTGATTACAATGCCTCTTATGGTTCTTGTCAATGGACGCACTGCAAGTGCAAGTGAAATTGTAGCAGCAGCTCTTCATGACAATTGCAGAGCTATCCTAGTAGGGGAAAGGACATTTGGAAAGGGTTTGATTCAATCAGTTTATGAACTCGAGGATGGATCAGCAGTGGTGGTAACTGTTGGGAAGTATGTTACTCCAAGTCACAGGGATATTGATGGGAATGGAATCGAGCCTGATTTCCACGACAGACCAGGTTTGGTTGAAGCAAAGCAAACTCTCAGTCGGTGCCGTGTCCCTGCAGAGAATTTATGACGCAGGATAAGTTGCTTTGAGTTTATAGAGAAGGCCCGTTGTGTTCATCTGCATTATCTTTTACATATGTATATATTTCATTTGAAACAGATTTCTCTAGAGAAATTCGTCTCTTATTGTATGCCAATTTTCTTCTCTGTTTATGCCTTTGACCACTCAAACCAGCTGATGAATATAACCATCCCCGCTATTCTTTTCGTAAATACGCAATACTAACTTGGCTTGCACTAGAAAACTAGTGCCAGATTTATCCTGTTATTGGGGTTGTTATTGGAATTAACGTAAAGCTAATCTATTAAAGATGACTATGAGCATATTTTTAGATTATTTTGCAAAAGTAATAATTCAATAAAGAATTAG

Ace file of the UniGene sp_v2.0_unigene426 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D1 protease-like protein precursor [Triticum aestivum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	carboxyl-terminal-processing protease	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLW9

Fln msg:

Fln protein: MELVRWNCVHIYNSSSSLLQTKVAINCKMKGNLHLPKPLSLSRKWICSLSHSKNMDAQVNYLKEGGKLLWVIVTGFVLCFGTPVCNDSALGQTLGLGSVSRDGGQVQGRDVNGYRGKEKRNYQ*GYRGGSLAGRE*ELILDARHHTWSAEAWLKKKEEALSRPIQTRSTAHDIIRRMLATLDDPYTRFLTPSEFTKLARYDMSGIGINFKEVSNADGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDTQNVMIERQQVVRTPVFYRLEKDENGNADMGYIRLKEFNALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLFLEGGDTVLYTIGRDLDSQNSVLAERPMLITMPLMVLVNGRTASASEIVAAALHDNCRAILVGERTFGKGLIQSVYELEDGSAVVVTVGKYVTPSHRDIDGNGIEPDFHDRPGLVEAKQTLSRCRVPAENL*

Protein Length: 497

Fln nts: ACTAAATGCTCTGCTGGTGCTCAGGAGGAAAAGGAAGCTCCCTGGACATGGCAGCCACAGCCATGCAAATTACACAGCTTGCATTTTGAAAAGTACAGTGATCGCCATTAATGTAAGCAGCGTGGAAGGCCTCGGCAGAGAAACTCATTTCTGTTCCTACAGAGTAAGCTTAAAGA_-_ATGGAGCTGGTCCGCTGGAACTGTGTGCATATTTACAATTCTTCATCCTCTCTCCTGCAAACAAAAGTGGCCATTAATTGCAAAATGAAAGGCAATCTACACCTACCCAAGCCTCTATCACTGTCCAGGAAATGGATTTGCAGCCTAAGTCACAGCAAAAACATGGATGCACAGGTTAATTATTTGAAGGAAGGAGGAAAATTGTTGTGGGTAATTGTTACAGGATTCGTCCTATGTTTTGGTACTCCTGTCTGCAATGATTCAGCTCTCGGGCAGACACTGGGACTTGGCTCAGTCTCAAGAGATGGTGGACAGGTGCAAGGAAGAGATGTGAATGGATACAGGGGCAAAGAAAAGCGCAATTACCAATGAGGGTATCGTGGAGGAAGCTTGGCTGGTCGTGAATGAGAACTCATTTTAGATGCACGTCACCATACTTGGTCCGCTGAAGCCTGGCTGAAAAAGAAGGAAGAGGCACTTAGTAGGCCTATTCAGACTAGATCAACGGCCCATGACATTATCAGAAGAATGTTAGCCACCTTAGATGACCCATATACACGTTTTCTGACTCCCTCAGAGTTCACAAAGTTGGCTCGATATGATATGTCAGGCATTGGCATTAACTTCAAGGAAGTCTCCAATGCAGATGGTGTGACCAAGTTGAAAGTTTTAGGGATTATCTTAGGAGGCCCTGCTCATTCAGCGGGTGTCAAGCAGGGTGATGAGATTTTGTCAGTTAATGGAAAAAGTGTGGAAGGGATGACATCATCTGATGTTGCTTCTCTAATTCAAGGTCCCAAGGAAACATTTGTCTCACTTGAGGTTAAGCATGGGGATTGTGGCGACACCCAAAATGTTATGATTGAACGGCAACAAGTAGTTCGAACTCCAGTTTTTTATCGTTTGGAGAAGGATGAAAATGGAAATGCTGATATGGGCTATATACGGCTCAAAGAGTTCAATGCATTGGCAAGGAGAGATTTAACTACAGCTATGCGACGCCTCAAAGATGCAGGTGCATCTCACTTTGTGTTAGACCTACGAGATAATCCTGGGGGCTTAGTGCAGGCAGGTATTGAGATTGCCAAGCTATTTTTGGAAGGGGGAGACACTGTATTATATACCATTGGACGAGATCTTGATTCACAGAATAGCGTCCTTGCTGAAAGACCTATGTTGATTACAATGCCTCTTATGGTTCTTGTCAATGGACGCACTGCAAGTGCAAGTGAAATTGTAGCAGCAGCTCTTCATGACAATTGCAGAGCTATCCTAGTAGGGGAAAGGACATTTGGAAAGGGTTTGATTCAATCAGTTTATGAACTCGAGGATGGATCAGCAGTGGTGGTAACTGTTGGGAAGTATGTTACTCCAAGTCACAGGGATATTGATGGGAATGGAATCGAGCCTGATTTCCACGACAGACCAGGTTTGGTTGAAGCAAAGCAAACTCTCAGTCGGTGCCGTGTCCCTGCAGAGAATTTATGA___CGCAGGATAAGTTGCTTTGAGTTTATAGAGAAGGCCCGTTGTGTTCATCTGCATTATCTTTTACATATGTATATATTTCATTTGAAACAGATTTCTCTAGAGAAATTCGTCTCTTATTGTATGCCAATTTTCTTCTCTGTTTATGCCTTTGACCACTCAAACCAGCTGATGAATATAACCATCCCCGCTATTCTTTTCGTAAATACGCAATACTAACTTGGCTTGCACTAGAAAACTAGTGCCAGATTTATCCTGTTATTGGGGTTGTTATTGGAATTAACGTAAAGCTAATCTATTAAAGATGACTATGAGCATATTTTTAGATTATTTTGCAAAAGTAATAATTCAATAAAGAATTAG

Fln Alignment:

Contig426___MELVRWNCVHIYNSSSSLLQTKVAINCKMKGNLHLPKPLSLSRKWICSLSHSKNMDAQVNYLKEGGKLLWVIVTGFVLCFGTPVCNDSALGQTLGLGSVSRDGGQVQGRDVNGYRGKEKRNYQ*GYRGGSLAGRE*ELILDARHHTWSAEAWLKKKEEALSRPIQTRSTAHDIIRRMLATLDDPYTRFLTPSEFTKLARYDMSGIGINFKEVSNADGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDTQNVMIERQQVVRTPVFYRLEKDENGNADMGYIRLKEFNALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLFLEGGDTVLYTIGRDLDSQNSVLAERPMLITMPLMVLVNGRTASASEIVAAALHDNCRAILVGERTFGKGLIQSVYELEDGSAVVVTVGKYVTPSHRDIDGNGIEPDFHDRPGLVEAKQTLSRCRVPAE
B8LLW9_____________MELIRRNCVHICNASSPFLQTKLAINCKVKANLHLPKPLSLSRRWICSLSHSKNMDGQVNHLKEGGKMMWVIVTGFILCFGTPVCNNPALGQTLDLGQPQEMVDRCKEGMPTDTGAEEKAITNEGIVEEAWLVVN-ENFLDARHHTWSAKAWLKKKEEALSRPIQTRSTAHDIIRRMLATLDDPYTRFLTPSEFTKLARYDLSGVGINLKEVSDEDGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDSQNVIIERQQVIRTPVFYRLEKDENGNEDMGYIRLKEFSALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLFLESGDPVIYTVGRDLDSQKSILAKSPALITVPLMVLVNGHTASASEIVAAALHDNCRAILVGERTFGKGLIQSVYELEDGSAVVVTVGKYVTPTHRDIDGNGIEPDFHYRPGLVEAKKTLSRCRVPAE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1215	85		14		0.993533
1288	83			16	0.994512
1289	83		16		0.994512
1290	16	83			0.994512
1294		16		83	0.994512
1296		16		83	0.994512
1297	83	16			0.994512
1298	16			83	0.994512
1299	16		83		0.994512
1307			16	83	0.994512
1309	83	16			0.994512
1630	80		20		0.995493
1646	80		20		0.995493
1648			20	80	0.995493
1650			20	80	0.995493
1651	20			80	0.995493
1653	20	80			0.995493
1654			20	80	0.995493
1658	20			80	0.995493
1659	20	80			0.995493
1660		80	20		0.995493
1661			20	80	0.995493
1665	80		20		0.995493
1667		20		80	0.995493
1668	80		20		0.995493
1679			80	20	0.995493
1685	75	25			0.996473
1686		33		66	0.997452
1687	25		75		0.996473
1863		66		33	0.997452
1949		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain