SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene405

Length: 1512 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene405 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycolate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RWT6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	uncharacterized hydrolase yor131c-like	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	76%
Blast2go	Metabolic pathways	01100		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 2	IPR006388	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP4

Fln msg: Separated hits, possible frame ERROR between 442 and 642, your sequence is longer than subject: 232 - 152

Fln protein: MLIVRSFMCRPAMATGFNAPSASVRMSTSSVGRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADVKSGNTSGIDILHQIEQWSPDRQQKAYATITDFERQAHERLQIMPGALELCEFLDSRQIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVVARVLVQLHVCLMNLASTTVLIQISTHNQISR*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGAAAACAACCAAAAGAAATGTTGAA_-_ATGTTGATTGTGAGAAGCTTTATGTGCAGGCCGGCCATGGCGACAGGATTCAATGCTCCCTCTGCAAGTGTTCGGATGAGTACTTCTTCCGTTGGCAGGGTCAAGCCAAAATTGAGGGGAGTGGTGTTCGACATGGATGGGACCCTGACCGTCCCAGTTATAGACTTTGCTCTCATGAAGCGCATGGTTCTGGGAGACGATCATGCCGACGTTAAGTCTGGAAATACTTCAGGCATCGACATACTTCACCAGATTGAGCAATGGAGCCCTGATAGACAGCAGAAGGCCTATGCCACTATCACTGATTTCGAACGCCAGGCCCATGAGCGACTCCAGATAATGCCGGGAGCATTGGAACTTTGCGAGTTTCTTGATTCAAGACAAATAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGGTTGTGGCAAGAGTGCTGGTGCAATTACATGTTTGCTTGATGAATCTGGCAAGTACAACAGTACTGATACAAATCTCAACCCACAACCAGATTTCAAGGTGA___ACTCATTATTCGAGCTTTCTAAATTATTGGACACGGAAGTTGAATTGACGCCTTAACGGTTGGGATTTTAAGGTTTGAGATTTTCTTATTTCCTCTCTAAGAGTGTAATTTTTTATCAAAGTATGATATCAAAATTAATACTTTGCATTCATCTTGAAACTTTAAATCATGTTTGAAATTAACTTCCAATAGCTGGAAAGTAGGAAATGCAGGACAGTCTATGGAAAGCAACATTCTAGTTGCAAGTGAGGATAAATATCGGTCAAATATGATATATCACCTCACGTTAGGCATACAGGCTGATTTTGTTTTATGCTTTTGGGAGAAATTGCTGTTGAAAAGTATGTGGAGCAATTAATTTCAGTTCAGCAGTCTATGATAGTATATAATAGTCCAACTCGAATGAATTTGAAGGATGGGATCATTGGGAACATCAAATGTGAGTCCAAAGTCACGTCTACTTTATCTAAGTTTGCAGTTGCTTTATTCATATAAGGACTTTTCATCAGTTTATTGCCTTTTCTCTCAGCATCACTTTCTACTCTTTGATTTCATTATATGATACGTTAATATGCTACAAAAATGTTGAGAAAATTCCTTACTGGATTAATGGAAGATACTTTTTACCAGAGACTAATGCACCTTTGAACTAGCTAAATTCTGTTATGTAGCTGGAAGTGTCAACTATCAAATCACATTTTAAGAGGAAAAGTGATGAAGTTCATTATTAGCAATCAATACAGCTAAATTCAATCCTCTTTATTTG

Fln Alignment:

Contig405___MATGFNAPSASVRMSTSSVGRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADVKSGNTSGIDILHQIEQWSPDRQQKAYATITDFERQAHERLQIMPGALELCEFLDSRQIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVVARVLVQLHVCLMNLASTTVLIQISTHNQISR
A9NNP4_____________MATGFNSPSASVRISTSSDVRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADIKSGNTSRIDILHQIEQWSPDRQQKAYTIITDFERQAHERLQIMPGALELCEFLDSRQIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLVASVRVPLHAYLMNLASTTVLIHISTHNQISR

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
389		80		20	1.0
476	12	87			0.999964
931		10	90		0.90298
932		10		90	0.90298
936			90	10	0.90298
947	88	11			0.923564
1012		87		12	0.992554
1015	88		11		0.923564
1031	88	11			0.923564
1032	88		11		0.923564
1034		88		11	0.923564
1038		12	87		0.992554
1039		12	87		0.992554
1053	14		85		0.993533
1054	14	85			0.993533
1057	14		85		0.993533
1058	14			85	0.993533
1061	16			83	0.994512
1066		83	16		0.994512
1467	75		8		0.99999
1468		25		75	1.0
1469		28		71	1.0
1470		28		71	1.0
1472	28			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain