SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene390

Length: 2939 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene390
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAATTCTGTGAATCCATCGATCTACCCAGCCAATTGAGTATCCTCATCTGCTTTCTACTTCACAGTTTTAGCTACCGCAAGGAATCGTCTGTTCTTTTGTGTCGGAAAGTGCATCATTTAGTCAATTAGCGAAGTAATAAGCGGGGCGAGATGTCTCTGTTGGCCTTCAAAGCTGCTGCAATTTGAGCCATTCCATTTAATTTCAAGCATACTCAGATAAATCCCCATCCGCTTCCACTTTACTTCACAGTTCTCGGTTACTCCCAGGTATTTTCTTCTCTTCGTTTTTGTTGGGAAGTACATCCTTCAACCAATTAGCGAAGTCATAATCGTGACGAGATGTTTCTCTTGGCCTTCAAAGCGGCTGCAATTTGAGCCATCCCATGTTATAAATTCTCAGAAAATGCTTAAACAGTCCTGTCTGATTTCAAATTTCTAGGTAGTGTTTGTTTCCCCTTTCTGGGGCTTCTGGATGTCCGAAAGCTCGATGGGCCGGTTCAATCCGGCCACTTAGTGCTTCCAGTAAGGTTAAACCATCTTCAATAATGGGCTGAATGAGACTGAAATCAAGCGTTTGAGTATTTCGGATATCGATTGAGGACTCGCAGAAGCTAATCTGGATAGGTAATCCCCTTGGAATATTTTGCTGAATTGGTCAGTCTCGAGGGTGATAAAGAAATTGTGCCATGGAGGACTCAGTTGTGCCTACTCACATGGTTCCTACACATTCTATGTTATTCAAGCTCGGCCTTGGTGAATCCTCTATTGTTTCCATCACATTGTTTGTAACTCTACTCTGTATTTGTATTATAATTGGTCACCTACTGGAGGAGAATAAATGGATGAACGAGTCTATTACATCCCTTGTTATTGGTATATTTGCTGGAGTGATTGTGTTGCTAATTAGCAAGGGAAAAAGTTCTCATATTCTGGTATTCAACGAAGAACTCTTCTTTATCTATCTCCTTCCACCGATAATATTCAATGCCGGATTTCAGGTGAAGAAGAAACAATTTTTTCGCAACTTTGCCACCATTCTCTTATTTGGTGCAGTTGGTACCTTTATATCTTTTATCATTGTATCGCTAGGTGCAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGTTTGGGGAGGGTGTTGTCAACGATGCCACATCTATTGTGCTTTTTAATGCGGTTCATAACTTTGATCTCAGCAACATGGATGCAATTACAGCGCTTAAATTAATTGGCAACTTTTTTTATTTGCTTTTAACGAGTACTGCATTGGGAATTGTGGCTGGTCTTCTGAGTGCCTACATCATCAAAAAACTGTATTTTGGAAGACATTCTACTGATAGGGAGGTTGCAATTATGATTCTCATGGCATATCTGTCATACATGCTCGCCGAGCTATTCAACCTAAGTGGGATTCTTACGGTTTTCTTCTGTGGGATTGTTATGTCACATTATACATGGCACAATGTTACTGAAAGCTCAAGGATTACAACCAAGCATACATTTGCAACGATGTCTTTTATTTCTGAAATATTTATCTTCCTCTATGTGGGCATGGATGCATTGGACATTGAAAAGTGGAAAATGGTAAAGGCCAGCCCTGGCACATCTATTGGCATCAGCGGTGTTCTGCTGTGCTTGGTTATACTCGGAAGAGCAGCTTTCGTGTTCCCAATTTCATGGTTGTCTAATTACGCCAAATCACCAAATAGTAAAATTGAGTTTAAACAGCAGTTCATTATTTGGTGGTCTGGTCTTATGAGAGGTGCAGTTTCAATGGCACTTGCTTACAACCAATTCACAACGTCAGGCACAACAAAGTTGCGAGATCACGCAATTATGATTACAAGTACCATAATCGTGGTTGTCTTTAGCACACTGGTATTTGGCTTCCTTACAAAGCCTTTGATTAGATTTCTAATGTTTCGGAATCCAAAGCCAAGAGAAAACGATGACCTAGAGGCATCCTGTTCAAAGGATTTACGAATCCAATTCCTTGACAAAGATGATAGGGATGAAACAGAAAACCACAACGTTCCACGGATAAACAGCTTACGTATGCTTTTTCGAGAGCCTACATCTACAGTGCATGAGTTGTGGCGCAGATTTGATGATTCATACATGCGTCCTGTGTTTGGTGGCCGAGGTTTTGTTCCGGTCGTTCCTGGATCACCAACTGAAGCCAGGGATATCCGTAGCCTTGTCTGACTACCAACCAACCATAAGGAGATATTGCCTACAATTAACCTCTCGTCAAATCCTTGAATTGAATGCCGTCAGTCTCTACATCTCAATACTATAATATGATTGCAGGGCCTATTGCATTTATAATGTCTCTAGATTGTATGCTAGCTAGTTGCCTTAGTTCAATGAGTATGATTCATTTAAGCTCTTAAAAGAAATTTGGGGATAATTTGGTGGCCGCGTCCAGGATTTTGATGTCTAAATTTCTTCCTTCACACTTCGTGTAAAGTAGGATTTTACTGTCAAGCTTGAGGGGTTAGGTTATTGTAAAGAATCTGAGCTGACGATGTTGAACTTGTGTAAATCTAGTTATAGTTTGGGATTTCATTAAGAGTGAAGGAAACTTTTCTAATAGGAGTTGCAGAGTATCCACTAACATTGAGTAGTCGTTTGATTTTCTCTTGCAACGGAATGCTCTGGCAATGGAGTTACAACAATAGTGATATTATCCTTTGTATTCGGAATTTGTATATTAAAACTGTTTTGGAGGGATGACCAGTTTTCATTATCTGTTTGCCCATATAACATTCATTTGATATC

Ace file of the UniGene sp_v2.0_unigene390 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Picea sitchensis RepID=C0PSW3_PICSI	-	-	71%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	na+ h+ antiporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	regulation of pH	GO:0006885	Biological Process	82%
Blast2go	sodium ion transport	GO:0006814	Biological Process	82%
Blast2go	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Na+/H+ exchanger	IPR004709	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR018406	-	-
Sma3		IPR018407	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg:

Fln protein: MEDSVVPTHMVPTHSMLFKLGLGESSIVSITLFVTLLCICIIIGHLLEENKWMNESITSLVIGIFAGVIVLLISKGKSSHILVFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFATILLFGAVGTFISFIIVSLGAVFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLSNMDAITALKLIGNFFYLLLTSTALGIVAGLLSAYIIKKLYFGRHSTDREVAIMILMAYLSYMLAELFNLSGILTVFFCGIVMSHYTWHNVTESSRITTKHTFATMSFISEIFIFLYVGMDALDIEKWKMVKASPGTSIGISGVLLCLVILGRAAFVFPISWLSNYAKSPNSKIEFKQQFIIWWSGLMRGAVSMALAYNQFTTSGTTKLRDHAIMITSTIIVVVFSTLVFGFLTKPLIRFLMFRNPKPRENDDLEASCSKDLRIQFLDKDDRDETENHNVPRINSLRMLFREPTSTVHELWRRFDDSYMRPVFGGRGFVPVVPGSPTEARDIRSLV*

Protein Length: 545

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAATTCTGTGAATCCATCGATCTACCCAGCCAATTGAGTATCCTCATCTGCTTTCTACTTCACAGTTTTAGCTACCGCAAGGAATCGTCTGTTCTTTTGTGTCGGAAAGTGCATCATTTAGTCAATTAGCGAAGTAATAAGCGGGGCGAGATGTCTCTGTTGGCCTTCAAAGCTGCTGCAATTTGAGCCATTCCATTTAATTTCAAGCATACTCAGATAAATCCCCATCCGCTTCCACTTTACTTCACAGTTCTCGGTTACTCCCAGGTATTTTCTTCTCTTCGTTTTTGTTGGGAAGTACATCCTTCAACCAATTAGCGAAGTCATAATCGTGACGAGATGTTTCTCTTGGCCTTCAAAGCGGCTGCAATTTGAGCCATCCCATGTTATAAATTCTCAGAAAATGCTTAAACAGTCCTGTCTGATTTCAAATTTCTAGGTAGTGTTTGTTTCCCCTTTCTGGGGCTTCTGGATGTCCGAAAGCTCGATGGGCCGGTTCAATCCGGCCACTTAGTGCTTCCAGTAAGGTTAAACCATCTTCAATAATGGGCTGAATGAGACTGAAATCAAGCGTTTGAGTATTTCGGATATCGATTGAGGACTCGCAGAAGCTAATCTGGATAGGTAATCCCCTTGGAATATTTTGCTGAATTGGTCAGTCTCGAGGGTGATAAAGAAATTGTGCC_-_ATGGAGGACTCAGTTGTGCCTACTCACATGGTTCCTACACATTCTATGTTATTCAAGCTCGGCCTTGGTGAATCCTCTATTGTTTCCATCACATTGTTTGTAACTCTACTCTGTATTTGTATTATAATTGGTCACCTACTGGAGGAGAATAAATGGATGAACGAGTCTATTACATCCCTTGTTATTGGTATATTTGCTGGAGTGATTGTGTTGCTAATTAGCAAGGGAAAAAGTTCTCATATTCTGGTATTCAACGAAGAACTCTTCTTTATCTATCTCCTTCCACCGATAATATTCAATGCCGGATTTCAGGTGAAGAAGAAACAATTTTTTCGCAACTTTGCCACCATTCTCTTATTTGGTGCAGTTGGTACCTTTATATCTTTTATCATTGTATCGCTAGGTGCAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGTTTGGGGAGGGTGTTGTCAACGATGCCACATCTATTGTGCTTTTTAATGCGGTTCATAACTTTGATCTCAGCAACATGGATGCAATTACAGCGCTTAAATTAATTGGCAACTTTTTTTATTTGCTTTTAACGAGTACTGCATTGGGAATTGTGGCTGGTCTTCTGAGTGCCTACATCATCAAAAAACTGTATTTTGGAAGACATTCTACTGATAGGGAGGTTGCAATTATGATTCTCATGGCATATCTGTCATACATGCTCGCCGAGCTATTCAACCTAAGTGGGATTCTTACGGTTTTCTTCTGTGGGATTGTTATGTCACATTATACATGGCACAATGTTACTGAAAGCTCAAGGATTACAACCAAGCATACATTTGCAACGATGTCTTTTATTTCTGAAATATTTATCTTCCTCTATGTGGGCATGGATGCATTGGACATTGAAAAGTGGAAAATGGTAAAGGCCAGCCCTGGCACATCTATTGGCATCAGCGGTGTTCTGCTGTGCTTGGTTATACTCGGAAGAGCAGCTTTCGTGTTCCCAATTTCATGGTTGTCTAATTACGCCAAATCACCAAATAGTAAAATTGAGTTTAAACAGCAGTTCATTATTTGGTGGTCTGGTCTTATGAGAGGTGCAGTTTCAATGGCACTTGCTTACAACCAATTCACAACGTCAGGCACAACAAAGTTGCGAGATCACGCAATTATGATTACAAGTACCATAATCGTGGTTGTCTTTAGCACACTGGTATTTGGCTTCCTTACAAAGCCTTTGATTAGATTTCTAATGTTTCGGAATCCAAAGCCAAGAGAAAACGATGACCTAGAGGCATCCTGTTCAAAGGATTTACGAATCCAATTCCTTGACAAAGATGATAGGGATGAAACAGAAAACCACAACGTTCCACGGATAAACAGCTTACGTATGCTTTTTCGAGAGCCTACATCTACAGTGCATGAGTTGTGGCGCAGATTTGATGATTCATACATGCGTCCTGTGTTTGGTGGCCGAGGTTTTGTTCCGGTCGTTCCTGGATCACCAACTGAAGCCAGGGATATCCGTAGCCTTGTCTGA___CTACCAACCAACCATAAGGAGATATTGCCTACAATTAACCTCTCGTCAAATCCTTGAATTGAATGCCGTCAGTCTCTACATCTCAATACTATAATATGATTGCAGGGCCTATTGCATTTATAATGTCTCTAGATTGTATGCTAGCTAGTTGCCTTAGTTCAATGAGTATGATTCATTTAAGCTCTTAAAAGAAATTTGGGGATAATTTGGTGGCCGCGTCCAGGATTTTGATGTCTAAATTTCTTCCTTCACACTTCGTGTAAAGTAGGATTTTACTGTCAAGCTTGAGGGGTTAGGTTATTGTAAAGAATCTGAGCTGACGATGTTGAACTTGTGTAAATCTAGTTATAGTTTGGGATTTCATTAAGAGTGAAGGAAACTTTTCTAATAGGAGTTGCAGAGTATCCACTAACATTGAGTAGTCGTTTGATTTTCTCTTGCAACGGAATGCTCTGGCAATGGAGTTACAACAATAGTGATATTATCCTTTGTATTCGGAATTTGTATATTAAAACTGTTTTGGAGGGATGACCAGTTTTCATTATCTGTTTGCCCATATAACATTCATTTGATATC

Fln Alignment:

Contig390___DSVVPTHMVPTHSMLFKLGLGE----SSIVSITLFVTXXXXXXXXXXXLEENKWMNESITSLVIGIFAGVIVLLISKGKSSHILVFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFATILLFGAVGTFISFIIVSLGAVFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLSNMDAITALKLIGNFFYLLLTSTALGIVAGLLSAYIIKKLYFGRHSTDREVAIMILMAYLSYMLAELFNLSGILTVFFCGIVMSHYTWHNVTESSRITTKHTFATMSFISEIFIFLYVGMDALDIEKWKMVKASPGTSIGISGVLLCLVILGRAAFVFPISWLSNYAK-SPNSKIEFKQQFIIWWSGLMRGAVSMALAYNQFTTSGTTKLRDHAIMITSTIIVVVFSTLVFGFLTKPLIRFLMFRNPKPRENDDLEASCSKDLRIQFLDKDDRDETENHNVPRINSLRMLFREPTSTVHELWRRFDDSYM
C0PSW3_____________DPTMVDQMGPLRSFLVRMGLASTSDHSSVVAITLFVTLLCACIVIGHLLEENRWMSESITALIIGLCTGVIVLLFSQGKSSHIMLFSEELFFIYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTFISFSIVSAGAMLLFKKFDIGPFEIGDYLAIGTIFSATDSVCTLQILSQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLTHIDGSTALQLFGNFVYLFLTSTALGIGAGLLSAYIIKALYFGRHSTDREVAIMILMSYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATMSFIAETFIFLYVGMDALDIEKWKMAKRSPGTSVGLSGVLLGLILVGRAAFVFPLSFLSNCLKRTPNSRIGFRQQFVIWWAGLMRGAVSMALAYNQFTRSGLTKLPENAIMITSTISVVLFSTVVFGMITKPLIRLLLPQSSKPGQDNTSDPSSPKGLHIPLLGNGEAVDIDGCHVRRPSSLRMLLQAPSFTVHYYWRKFDDAYM

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
464	92			8	0.999718
465	88	4	8		0.999262
466			4	88	0.999262
469			92	8	0.999718
470		91	8		0.999766
471	8	91			0.999766
473	8			91	0.999766
481		8		91	0.999766
483		8		91	0.999766
484			8	91	0.999766
635	90			10	0.90298
636	90		10		0.90298
638		90	10		0.90298
639		77		11	0.968132
640			11	88	0.923564
641	11	77			0.968132
643	11		88		0.923564
644	11	88			0.923564
645	11	88			0.923564
646	87		12		0.992554
651	62		25		1.0
652		75	25		1.0
653	75			25	1.0
656		25	75		1.0
696			85	14	0.993533
697		85	14		0.993533
699		85	14		0.993533
702	14			85	0.993533
705	85	14			0.993533
706		14		85	0.993533
707	14		85		0.993533
712		85		14	0.993533
715	16			83	0.994512
719	83	16			0.994512
720	83		16		0.994512
1016			90	10	0.90298
1017		90	10		0.90298
1019		90	10		0.90298
1022		90	10		0.90298
1023	10			90	0.90298
1026			10	90	0.90298
1030	90		10		0.90298
1031		90		10	0.90298
1037		90	10		0.90298
1272	14		7	78	0.999974
1280	91	8			0.999766
1282		8		91	0.999766
2088	83		16		0.999991
2272		87		12	0.992554
2546		87		12	0.992554
2610	66		33		0.997452
2700			12	87	0.992554
2702	87		12		0.992554
2706	12		87		0.992554
2707	87	12			0.992554
2717	87		12		0.992554
2718			12	87	0.992554
2723		12	87		0.992554
2724		85	14		0.993533
2852	80	20			0.995493
2905	75		25		0.996473
2907		75		25	0.996473
2909	75		25		0.996473
2916	25	75			0.996473
2918	75	25			0.996473
2920			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain