SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene388

Length: 2306 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene388
CAAATTAGAGTTATGAATGGGATCGTCGTGACCTTGGCTGTCACTCAGAAATGCAGTTTATTGCTGGACAAGGAATAATTTCATAGCATTTGTTTTCCAAGAAATTTCGTAGTATTTGTTTTCCAAGCAATTTCATAATTTGTTTTCCAAGTGAGTGGAACTCTTGAGTTCTCTAATGGATGATATTTTTGATCAATTACTTTCGCCGTCATGGGAAGAGATGAGTGGTGCTGACAGATCATCTTTGGATAGTAGTGCTGGAGGACCAACAAATTGCTTGTCCGGTGATTCTATGGGAACACCTCAAGGGAGCTCGAGATTGTCAACGATGTCAGTAACGCCGTCAAGTCATATGAGTCCAAACTTAGAAGTAAGTCAAACTGAACTTGATAGCAAGTTCTCAACGGGTGGAACTATACAAGGTCAAGAAAGCCAAAAAAATGTACAGCTTTCAGTACAGAGACAATTTCAGAATAATACTTCTGGGGGATCTGCTGTCTTGCAGTTGAACACACCTAGCCTTGTTTCTCCACATGGAGCTTCATCCCAAATTCTACCAGTCATTGGATGTGCAACAAAAGGAGCCCTTGCTATGCCCAGTTCTGCTCCAGTGGGAGCCAGTGTCAGTGAGGCATCTGTTGTCCAGTCATGTCACGGGGATACTCCCTCACCATCGCCAGTGCAGTCACATTGGGCTCAATCACACATACCTGGAGTTTCACCTATTCCCTTAGTGCCTAGGCAAGGGAAATCAGAAGCATTTATGTTGCATGCAGAAGCAATACAACGTGAAGGGCACATCTTGGGCAAACCATCTCGGCAGGAAGAAGACTTCATTGAAAGAGAAAGCAGATCTGCTAATGCTGGGCTGGACGGCCGACAGGGATCCCTATTGACCAATTATGCCAGATCACAAGTAGGTCAGACGTCATTAATGGTCACTTCAGGCTCACAACCCTGTCAGCAGAATACTGGAGTCCAGATGCTACAATCCAGCCAGGGAAATTCTTTACAGCAGCAAGGGAATCGTTCTGTCATTTCTCAAGATCAATTAGCGGCAACTGCTGGAGCTGCTTTGAATGGAGCTCCAAGGACACGTGTGAGGGCTCGTCGAGGTCAAGCTACTGATCCACACAGTATAGCTGAGCGGGAACGCAGGAAGAGGATTGCAAAAAATTTGAAATCTTTGCAGGAGCTTGTTCCAAATGCTAATAAGACAGACAAAGCGTCCATGCTGGATGAAATCATTGACTATGTCAAATTTCTACAGCTGCAAGTAAAGGTTTTGAGCATGAGTAGGCTTGGTGGTGCAGGTGCTGTTGCGCCTCTAATTGCTGATGTTCCAGCTGAGGGATCTGGCAGCCTAGCATCAGCGGCTCTGGGTCAAGCTGGTGGTTCATTATCGCAGGATAGTTTAGCCTTCGAGCAAAATGTTGTGAAGCTCATGGAGAAGGACATGACTGAAGCCATGCAGTATTTGCAAAATAAAGGGCTTTGTTTGATGCCAATTGCATTGGCAACTGCTATATCGAGTTCAACTGGAAAGCCATTATTGGGTTCTGGGATAACAAATTCTGTTGACAGTATCAGTGACAGACAAACCTCAGTCAAGCAGCCTGCTTCATTAGCTGTCAATAGTTGCTCAGGTGCTGTTGGAATGGGATCGGCTGGATTCAACAGTGATTTCCTTTTAAAGGAAAACACACTTGAAAAGAGAGGAAGAGAAGTAGTTCCCACTGCCGAGTCAAATGGTGCGGAGTTTGGGATACTATCTAGCCTGCCTAAACTTAGGAGAAAGGAATAGAGAAGATATCTGAGGCCAATAAAAGTTGCTTCTAACTTGAAGGGTTATCCAATATATGAAAAGTATACTGGTGGTTCACATACGAAACGACGTGGGCTAGGAGTATCTCTAATGGAGTTTTTTGCAATGTTGATTTTGCTTGTCATCTTAAACTGTAATCTCCCAGCTACCATGAACTAGCTGTTTGTTGGCAATCTTAGATCTCTGCAAATAGCATAGTAATTGACCACTTTCTAACAAGAACCAGAGGACAGAAATTGCCGTGGTTTTTACATGTCCGTTAGTCTTTTCTCGTTTTTTGTTTAAGTAGGAGTAGTTGTTTTTATTCAAGTATGAAGATTCAATTGTATAATCTTCTGGTTTTTTAAGAGCCCCAGGGATTAGTATTAAACATATCAATCAGGTGGGTTTTGGTGTGGGAAGGCTTTTTAATTATTCACGTCCTTCCCATGCAAGTCAATATTATATTCGAAAACGTTTACCGTGAGGGTTTTGGAATTCC

Ace file of the UniGene sp_v2.0_unigene388 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor bHLH66 [Arabidopsis thaliana] sp\|Q9ZUG9.1\|BH066_ARATH RecName: Full=Transcription factor bHLH66; AltName: Full=Basic helix-loop-helix protein 66; Short=AtbHLH66; Short=bHLH 66; AltName: Full=Transcription factor EN 95; AltName: Full=b	-	-	9.94922e-44	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	root hair cell development	GO:0080147	Biological Process	71%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY0

Fln msg: your sequence is longer than subject: 543 - 320

Fln protein: MDDIFDQLLSPSWEEMSGADRSSLDSSAGGPTNCLSGDSMGTPQGSSRLSTMSVTPSSHMSPNLEVSQTELDSKFSTGGTIQGQESQKNVQLSVQRQFQNNTSGGSAVLQLNTPSLVSPHGASSQILPVIGCATKGALAMPSSAPVGASVSEASVVQSCHGDTPSPSPVQSHWAQSHIPGVSPIPLVPRQGKSEAFMLHAEAIQREGHILGKPSRQEEDFIERESRSANAGLDGRQGSLLTNYARSQVGQTSLMVTSGSQPCQQNTGVQMLQSSQGNSLQQQGNRSVISQDQLAATAGAALNGAPRTRVRARRGQATDPHSIAERERRKRIAKNLKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGAVAPLIADVPAEGSGSLASAALGQAGGSLSQDSLAFEQNVVKLMEKDMTEAMQYLQNKGLCLMPIALATAISSSTGKPLLGSGITNSVDSISDRQTSVKQPASLAVNSCSGAVGMGSAGFNSDFLLKENTLEKRGREVVPTAESNGAEFGILSSLPKLRRKE*

Protein Length: 544

Fln nts: CAAATTAGAGTTATGAATGGGATCGTCGTGACCTTGGCTGTCACTCAGAAATGCAGTTTATTGCTGGACAAGGAATAATTTCATAGCATTTGTTTTCCAAGAAATTTCGTAGTATTTGTTTTCCAAGCAATTTCATAATTTGTTTTCCAAGTGAGTGGAACTCTTGAGTTCTCTA_-_ATGGATGATATTTTTGATCAATTACTTTCGCCGTCATGGGAAGAGATGAGTGGTGCTGACAGATCATCTTTGGATAGTAGTGCTGGAGGACCAACAAATTGCTTGTCCGGTGATTCTATGGGAACACCTCAAGGGAGCTCGAGATTGTCAACGATGTCAGTAACGCCGTCAAGTCATATGAGTCCAAACTTAGAAGTAAGTCAAACTGAACTTGATAGCAAGTTCTCAACGGGTGGAACTATACAAGGTCAAGAAAGCCAAAAAAATGTACAGCTTTCAGTACAGAGACAATTTCAGAATAATACTTCTGGGGGATCTGCTGTCTTGCAGTTGAACACACCTAGCCTTGTTTCTCCACATGGAGCTTCATCCCAAATTCTACCAGTCATTGGATGTGCAACAAAAGGAGCCCTTGCTATGCCCAGTTCTGCTCCAGTGGGAGCCAGTGTCAGTGAGGCATCTGTTGTCCAGTCATGTCACGGGGATACTCCCTCACCATCGCCAGTGCAGTCACATTGGGCTCAATCACACATACCTGGAGTTTCACCTATTCCCTTAGTGCCTAGGCAAGGGAAATCAGAAGCATTTATGTTGCATGCAGAAGCAATACAACGTGAAGGGCACATCTTGGGCAAACCATCTCGGCAGGAAGAAGACTTCATTGAAAGAGAAAGCAGATCTGCTAATGCTGGGCTGGACGGCCGACAGGGATCCCTATTGACCAATTATGCCAGATCACAAGTAGGTCAGACGTCATTAATGGTCACTTCAGGCTCACAACCCTGTCAGCAGAATACTGGAGTCCAGATGCTACAATCCAGCCAGGGAAATTCTTTACAGCAGCAAGGGAATCGTTCTGTCATTTCTCAAGATCAATTAGCGGCAACTGCTGGAGCTGCTTTGAATGGAGCTCCAAGGACACGTGTGAGGGCTCGTCGAGGTCAAGCTACTGATCCACACAGTATAGCTGAGCGGGAACGCAGGAAGAGGATTGCAAAAAATTTGAAATCTTTGCAGGAGCTTGTTCCAAATGCTAATAAGACAGACAAAGCGTCCATGCTGGATGAAATCATTGACTATGTCAAATTTCTACAGCTGCAAGTAAAGGTTTTGAGCATGAGTAGGCTTGGTGGTGCAGGTGCTGTTGCGCCTCTAATTGCTGATGTTCCAGCTGAGGGATCTGGCAGCCTAGCATCAGCGGCTCTGGGTCAAGCTGGTGGTTCATTATCGCAGGATAGTTTAGCCTTCGAGCAAAATGTTGTGAAGCTCATGGAGAAGGACATGACTGAAGCCATGCAGTATTTGCAAAATAAAGGGCTTTGTTTGATGCCAATTGCATTGGCAACTGCTATATCGAGTTCAACTGGAAAGCCATTATTGGGTTCTGGGATAACAAATTCTGTTGACAGTATCAGTGACAGACAAACCTCAGTCAAGCAGCCTGCTTCATTAGCTGTCAATAGTTGCTCAGGTGCTGTTGGAATGGGATCGGCTGGATTCAACAGTGATTTCCTTTTAAAGGAAAACACACTTGAAAAGAGAGGAAGAGAAGTAGTTCCCACTGCCGAGTCAAATGGTGCGGAGTTTGGGATACTATCTAGCCTGCCTAAACTTAGGAGAAAGGAATAG___AGAAGATATCTGAGGCCAATAAAAGTTGCTTCTAACTTGAAGGGTTATCCAATATATGAAAAGTATACTGGTGGTTCACATACGAAACGACGTGGGCTAGGAGTATCTCTAATGGAGTTTTTTGCAATGTTGATTTTGCTTGTCATCTTAAACTGTAATCTCCCAGCTACCATGAACTAGCTGTTTGTTGGCAATCTTAGATCTCTGCAAATAGCATAGTAATTGACCACTTTCTAACAAGAACCAGAGGACAGAAATTGCCGTGGTTTTTACATGTCCGTTAGTCTTTTCTCGtTTTTTGTTTAAGTAGGAGTAGTTGTTTTTATTCAAGTATGAAGATTCAATTGTATAATCTTCTGGTTTTTTAAGAGCCCCAGGGATTAGTATTAAACATATCAATCAGGTGGGTTTTGGTGTGGGAAGGCTTTTTAATTATTCACGTCCTTCCCATGCAAGTCAATATTATATTCGAAAACGTTTACCGTGAGGGTTTTGGAATTCC

Fln Alignment:

Contig388___VRARRGQATDPHSIAERERRKRIAKNLKSLQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM
A9NUY0_____________VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQALQCQVEFLSM

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
91	66			33	0.997452
157	80	20			0.995493
180	80		20		0.995493
186	80	20			0.995493
204	80	20			0.995493
209		40		60	1.0
219	88	11			0.923564
220		88	11		0.923564
221	11			88	0.923564
232			11	88	0.923564
242		11	88		0.923564
287	76	23			1.0
422		10		90	0.90298
454	30		70		1.0
607	12			87	0.992554
608			12	87	0.992554
610			12	87	0.992554
611	12	87			0.992554
613	12			87	0.992554
614			12	87	0.992554
615		12		87	0.992554
616	87	12			0.992554
622	88			11	0.923564
623	88	11			0.923564
625		11		88	0.923564
626		88	11		0.923564
629			11	88	0.923564
701		85		14	0.993533
721	85	14			0.993533
722		14		85	0.993533
723	85	14			0.993533
724	14	85			0.993533
889	25		75		0.996473
908	50		50		1.0
980	16		83		0.994512
1025		83		16	0.994512
1026		83	16		0.994512
1027	16			83	0.994512
1028			16	83	0.994512
1032	16			83	0.994512
1033			16	83	0.994512
1034		16	83		0.994512
1038		83	16		0.994512
1040		16	83		0.994512
1041	16			83	0.994512
1042	83	16			0.994512
1045	83	16			0.994512
1046	83		16		0.994512
1061	20			80	0.995493
1148		33		66	0.997452
1600		80		20	0.995493
1635			83	16	0.994512
1637	16	83			0.994512
1642	16		83		0.994512
1643		16		83	0.994512
1647		16	83		0.994512
1648		16	83		0.994512
1650	16		83		0.994512
1651			16	83	0.994512
1652	83		16		0.994512
1655	16	83			0.994512
1657		83	16		0.994512
1658	16		83		0.994512
1659		16		83	0.994512
1683		20		80	0.995493
1686		80		20	0.995493
1745		25		75	0.996473
1825		75		25	0.996473
1834	25			75	0.996473
2271			33	66	0.997452
2273	66		33		0.997452
2275	66			33	0.997452
2281	33		66		0.997452
2282		33	66		0.997452
2285	66		33		0.997452
2287	33		66		0.997452
2288	66		33		0.997452
2289		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain