SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene369

Length: 2963 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene369
CGTCGTGACCTTGGCTGTCACTCAATTACGACTACTACACTGACAGACAGGGCTTGAAAGCCGATCCACATATCCTCAACCACATCCGTCCATTATTCTACGACTAATACAGACAACACGTTCATGGTGGGAGGAATTCCAGCAGTACCTCTGTAACATTTATTGCCAAGTTGAAGAAGCAGAAGAGAAAGGGTCGGTGTTGGACCAAGAAGCGCTGGTAGTGGCGCCATGTTTCTCCGATGGAGAAAGGTAGGAGAACCGGCTTCGGCAGCCGATTGCATATCCCGGACCTGGAGAACCAAAGGCAGATCTCCTCCAAACCCCAATAGCAATAGAGCAGCTGCAGGGCTTTTGCAGGAAGGAGGAGGCGAAGAAGAGAGCAACAACGGGCGGGCTTCTGCGCAGGACAATTATTATTTCAGCAGCTTGAACCGTCCGCTGCCATTTTCGCCGAGGTTCAGCTACTGCCTGCACCTTGGTACAATTGCGGAGAAGTCCGCGCGCCCGAAGCGGAGGGAAGCCCTAGGGTTTCAAGAGCGCAGTAAATGGGACGGCGGACGCGACGATTTCCAGAATCGGCAGCTCAAAGCCAACGGGAATTGCCCTCGCTGCGGGAAACAAATGACGCTTTATTTCTCGACTGCTCCGCATCTCAATATTTTTTCTGAAAAACCCACTCTTTCCGGGCGGCTGGACAAGGGCAAGGGCTTTGAAACGGTAAATCTCTGTCCCAATTGCAAAACGGCGTATTATTTCCGGCCTCTCAAATTGGCTCCACTACAGGGGGATTTCGTTGAAGTAGGCGTACTTCATGGTAATAACAGTAATCGTAATAATAGGAGGAGGATTGTGAGGGACGATGATAGTGAAAATTGCACTAGTAGTAGAGGAATGGGCAGCAGGGGGAACTGCGATGGCGATTTAGGGGATGAAAGCAATGATGGCAATGTGCAGCTCTCTTTCTGGGAAACCTTACGGTCATGTGGAGTCTCGTACGGTGACCCCCCAGAGCATTGGCAGCCTCCTGGGAATGGACTTGCTATACCGCCCGCCGTTGCGCTTCAGTCGCCGCCTGGTCCTCCTTACCCGCCCAACATTAATCTGATCCGTTCGCATCTGGGGAACGGAGGGGGAGGTGGTGACAGCTCTGGCGGATCTGCCGGGGGAGGTTTTGGTTCGAGAGATGGTTGGGACGGGGGGGGCAATTTGGGGAAGGATTTGCCGACTCCTCGGAAAATTTGCAAGGGGCTCGACAAGTTTGTTGTCGGACAGGAGCGAGCGAAAAAGGTGCTTGCAGTAGCTGTGTACAATCACTATAAGCGGATTTTCCATGAGTCTTTGCAGAAAGGCGGTTGCAAGGGATTTTCATCGGATGGGCTTGGTGTATCAGACGCGAGTCCTCCCGGAGAAGAAACTGAGGAGAGTGATATGGTGGAACTGGAGAAAAGCAATGTTCTACTCTTGGGTCCTACTGGCTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATCGCAGATGCAACAACTTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCTATTTTGTATAAACTACTCATGGTTGCCGATTTCAATGTTAAAGCAGCTCAGCAAGGCATTGTTTATATTGATGAAGTTGATAAAATCACTAAGAAGGCTGAAAGCCTCAATATTAGCAGGGATGTGTCAGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCTCGTGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGCGGGGCTTTTGTGGATCTAGAGAAAACAATTTCTGAGAGACGGCAAGATTCTTCTATTGGCTTTGGAGCACCTGTACGAGCTAATATGAGGGCTGGTGGCCTGACAAATGCTGCGGTGACATCATCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTTATTGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTGCTTGTTAGCCTCTCAGCGTTGACTGAAGACCAACTTGTTCAGGTGCTCATGGAGCCTAAAAATGCACTAGGAAAGCAATACAAGAAAATGTTTGAGATGAACAATGTGAAGTTACATTTCACTGAGGGTGCCCTTAGGCAGATTGCACAGAAGGCAATGGTCAAGAGTACTGGAGCCCGTGGATTGCGTTCTATCCTCGAGAACATTTTGACAGATGCCATGTTTGAGATTCCGGATGCAAAAACAGGGCTGGATAAAATAGATGCTGTTGTCATTGATGAAGAGGTTATAGGATTGCCAGATTCACAGGGATGTGGAGCCAAAATACTTCGCGGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACCGAAGGTTCTGATGAGGGCGAACCAGACATAGAAACTGAGCTTCCTTCCAGGGCCATGAGTATGTAATATTGTAGATTGACAAAATCCTTGTGTAGGATGGAAAAAAGATGTACTCTATTTTTTGTACAGCAGAGCCTGAGAATTTGTGTATAATCTGGACGTTATATAGTTATTTGTATGTGCCATTATTCACTTGTCTCTAGTGGGTCTCTTGATTGCATGCAATTTTAGGTTGCATGAATATGTATAGATTCTAGAAGCTTTCTTTATTTCATAGATTTTTTAGGAGGTAATTTATTTTACATGTCATATTTAACTGTATCAGACTTGAAATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACGAGTAATAGAAAATTAAATGCTCATTGTATACTTTGGGATTTCATTAAAGCTGCATTTGTTATCTGCTTCATTGCTACATGCTGTCTTACATTCTGTCCAGATTTTGTGAAATTGAATTTTTCAAGTACAATTCCAAATTC

Ace file of the UniGene sp_v2.0_unigene369 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent clp protease ATP-binding subunit clpx, putative n=1 Tax=Ricinus communis RepID=B9S1U1_RICCO	-	-	58%
FL-Next	tr=ATP-dependent clp protease ATP-binding subunit clpx, putative; Ricinus communis (Castor bean).	-	-	62%
Blast2go	atp-dependent clp protease atp-binding subunit -like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	80%
Blast2go	peptidase activity	GO:0008233	Molecular Function	80%
Blast2go	ATPase activity	GO:0016887	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	80%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Clp protease, ATP-binding subunit ClpX	IPR004487	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S1U1

Fln msg: your sequence is longer than subject: 763 - 698

Fln protein: MFLRWRKVGEPASAADCISRTWRTKGRSPPNPNSNRAAAGLLQEGGGEEESNNGRASAQDNYYFSSLNRPLPFSPRFSYCLHLGTIAEKSARPKRREALGFQERSKWDGGRDDFQNRQLKANGNCPRCGKQMTLYFSTAPHLNIFSEKPTLSGRLDKGKGFETVNLCPNCKTAYYFRPLKLAPLQGDFVEVGVLHGNNSNRNNRRRIVRDDDSENCTSSRGMGSRGNCDGDLGDESNDGNVQLSFWETLRSCGVSYGDPPEHWQPPGNGLAIPPAVALQSPPGPPYPPNINLIRSHLGNGGGGGDSSGGSAGGGFGSRDGWDGGGNLGKDLPTPRKICKGLDKFVVGQERAKKVLAVAVYNHYKRIFHESLQKGGCKGFSSDGLGVSDASPPGEETEESDMVELEKSNVLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGLTNAAVTSSLLESVESSDLIAYGLIPEFIGRFPVLVSLSALTEDQLVQVLMEPKNALGKQYKKMFEMNNVKLHFTEGALRQIAQKAMVKSTGARGLRSILENILTDAMFEIPDAKTGLDKIDAVVIDEEVIGLPDSQGCGAKILRGEGALERYLAEHKQKESLVVTEGSDEGEPDIETELPSRAMSM*

Protein Length: 764

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTACGACTACTACACTGACAGACAGGGCTTGAAAGCCGATCCACATATCCTCAACCACATCCGTCCATTATTCTACGACTAATACAGACAACACGTTCATGGTGGGAGGAATTCCAGCAGTACCTCTGTAACATTTATTGCCAAGTTGAAGAAGCAGAAGAGAAAGGGTCGGTGTTGGACCAAGAAGCGCTGGTAGTGGCGCC_-_ATGTTTCTCCGATGGAGAAAGGTAGGAGAACCGGCTTCGGCAGCCGATTGCATATCCCGGACCTGGAGAACCAAAGGCAGATCTCCTCCAAACCCCAATAGCAATAGAGCAGCTGCAGGGCTTTTGCAGGAAGGAGGAGGCGAAGAAGAGAGCAACAACGGGCGGGCTTCTGCGCAGGACAATTATTATTTCAGCAGCTTGAACCGTCCGCTGCCATTTTCGCCGAGGTTCAGCTACTGCCTGCACCTTGGTACAATTGCGGAGAAGTCCGCGCGCCCGAAGCGGAGGGAAGCCCTAGGGTTTCAAGAGCGCAGTAAATGGGACGGCGGACGCGACGATTTCCAGAATCGGCAGCTCAAAGCCAACGGGAATTGCCCTCGCTGCGGGAAACAAATGACGCTTTATTTCTCGACTGCTCCGCATCTCAATATTTTTTCTGAAAAACCCACTCTTTCCGGGCGGCTGGACAAGGGCAAGGGCTTTGAAACGGTAAATCTCTGTCCCAATTGCAAAACGGCGTATTATTTCCGGCCTCTCAAATTGGCTCCACTACAGGGGGATTTCGTTGAAGTAGGCGTACTTCATGGTAATAACAGTAATCGTAATAATAGGAGGAGGATTGTGAGGGACGATGATAGTGAAAATTGCACTAGTAGTAGAGGAATGGGCAGCAGGGGGAACTGCGATGGCGATTTAGGGGATGAAAGCAATGATGGCAATGTGCAGCTCTCTTTCTGGGAAACCTTACGGTCATGTGGAGTCTCGTACGGTGACCCCCCAGAGCATTGGCAGCCTCCTGGGAATGGACTTGCTATACCGCCCGCCGTTGCGCTTCAGTCGCCGCCTGGTCCTCCTTACCCGCCCAACATTAATCTGATCCGTTCGCATCTGGGGAACGGAGGGGGAGGTGGTGACAGCTCTGGCGGATCTGCCGGGGGAGGTTTTGGTTCGAGAGATGGTTGGGACGGGGGGGGCAATTTGGGGAAGGATTTGCCGACTCCTCGGAAAATTTGCAAGGGGCTCGACAAGTTTGTTGTCGGACAGGAGCGAGCGAAAAAGGTGCTTGCAGTAGCTGTGTACAATCACTATAAGCGGATTTTCCATGAGTCTTTGCAGAAAGGCGGTTGCAAGGGATTTTCATCGGATGGGCTTGGTGTATCAGACGCGAGTCCTCCCGGAGAAGAAACTGAGGAGAGTGATATGGTGGAACTGGAGAAAAGCAATGTTCTACTCTTGGGTCCTACTGGCTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATCGCAGATGCAACAACTTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCTATTTTGTATAAACTACTCATGGTTGCCGATTTCAATGTTAAAGCAGCTCAGCAAGGCATTGTTTATATTGATGAAGTTGATAAAATCACTAAGAAGGCTGAAAGCCTCAATATTAGCAGGGATGTGTCAGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCTCGTGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGCGGGGCTTTTGTGGATCTAGAGAAAACAATTTCTGAGAGACGGCAAGATTCTTCTATTGGCTTTGGAGCACCTGTACGAGCTAATATGAGGGCTGGTGGCCTGACAAATGCTGCGGTGACATCATCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTTATTGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTGCTTGTTAGCCTCTCAGCGTTGACTGAAGACCAACTTGTTCAGGTGCTCATGGAGCCTAAAAATGCACTAGGAAAGCAATACAAGAAAATGTTTGAGATGAACAATGTGAAGTTACATTTCACTGAGGGTGCCCTTAGGCAGATTGCACAGAAGGCAATGGTCAAGAGTACTGGAGCCCGTGGATTGCGTTCTATCCTCGAGAACATTTTGACAGATGCCATGTTTGAGATTCCGGATGCAAAAACAGGGCTGGATAAAATAGATGCTGTTGTCATTGATGAAGAGGTTATAGGATTGCCAGATTCACAGGGATGTGGAGCCAAAATACTTCGCGGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACCGAAGGTTCTGATGAGGGCGAACCAGACATAGAAACTGAGCTTCCTTCCAGGGCCATGAGTATGTAA___TATTGTAGATTGACAAAATCCTTGTGTAGGATGGAAAAAAGATGTACTCTATTTTTTGTACAGCAGAGCCTGAGAATTTGTGTATAATCTGGACGTTATATAGTTATTTGTATGTGCCATTATTCACTTGTCTCTAGTGGGTCTCTTGATTGCATGCAATTTTAGGTTGCATGAATATGTATAGATTCTAGAAGCTTTCTTTATTTCATAGATTTTTTAGGAGGTAATTTATTTTACATGTCATATTTAACTGTATCAGACTTGAAATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACGAGTAATAGAAAATTAAATGCTCATTGTATACTTTGGGATTTCATTAAAGCTGCATTTGTTATCTGCTTCATTGCTACATGCTGTCTTACATTCTGTCCAGATTTTGTGAAATTGAATTTTTCAAGTACAATTCCAAATTC

Fln Alignment:

Contig369___LNRPLPFSPRFSYCLHLGTIAEKSARPKRREALGFQERSKWDGGRDDFQN----RQLKANGNCPRCGKQMTLYFST------APHLNIFSEKPTLSGRLDKGKGFETVNLCPNCKTAYYFRPLKLAPLQGDFVEVGVLHGXXXXXXXXXXXXRDDDSENCTSSRGMGSRGNCDGDLGDESN--DGNVQLSFWETLRSCGVSYGDPPEHWQPP---GNGLAI--PPAVALQSXXXXXXXPNINLIRSHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPTPRKICKGLDKFVVGQERAKKVLAVAVYNHYKRIFHESLQKGGCKGFSSDGLGVSDASPPGEETEESDMVELEKSNVLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGLTNAAXXXXXXXXXXXSDLIAYGLIPEFIGRFPVLVSLSALTEDQLVQVLMEPKNALGKQYKKMFEMNNVKLHFTEGALRQIAQKAMVKSTGARGLRSILENILTDAMFEIPDAKTGLDKIDAVVIDEEVIGLPDSQGCGAKILRGEGALERYLAEHKQKESLVVTEGSDEGEPDIETELPSRAMSM
B9S1U1_____________LHRWMPVSTISTYFNYLNIGCNR----RRESLIGLQERYKWDGNGDGNNNNSDVRKIRAESNCPRCSKHMDLLFSNRHFPSPSSNNNPNLDSTSNNNNCNTNNTYQAVNFCPSCKTAYYFRPYKITPLQGSFIEIGRVGNNSP----------NNKSRNRIGSLTKQHPSTEDLEEGFDSNAISGRLRASFWNTLRSYA---GDPPENWPPPPLNGNGLAVHTPPGPPFAP--------GVNVIRAN---GPGGGGGGEGGGEKSGGGGGGGWGGSNLGKDLPTPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLKKG-----PGEESGSSDA------VDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLSVAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLVRVLTEPKNALGKQYKKLFSMNKVKLHFTEKALRLIAKKAMAKNTGARGLRAILESTLTEAMYEIPDVKTGSDRVDAVIVDEESIGSVNASGHGGKILRGDGALESYLAEYKLKESAENVEAGDTELQDGEPEVSSRAMSM

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
1473		87		12	0.992554
1495	12		87		0.992554
1759	87	12			0.992554
1800		80	20		0.995493
1801	20	80			0.995493
1802		80	20		0.995493
1803		80		20	0.995493
1805	20		80		0.995493
1809	20	20			0.99255
1810	60	20		20	0.99255
1811	20			80	0.995493
1812	20	80			0.995493
1813		80	20		0.995493
1815		60	20	20	0.99255
1817	80	20			0.995493
1818	20	20			0.99255
2671		27		72	1.0
2716	88			11	0.923564
2717		88	11		0.923564
2718	11	88			0.923564
2719			11	88	0.923564
2721			11	88	0.923564
2722	11	88			0.923564
2727			12	87	0.992554
2729		12	87		0.992554
2730	12		87		0.992554
2733	87		12		0.992554
2734	87			12	0.992554
2738		12		87	0.992554
2740	12		87		0.992554
2774		80		20	0.995493
2775		80	20		0.995493
2776	20	80			0.995493
2777			20	80	0.995493
2779			20	80	0.995493
2780	20	80			0.995493
2781		20		80	0.995493
2782	20	80			0.995493
2783			20	80	0.995493
2784		20		80	0.995493
2786	20			80	0.995493
2787	20		80		0.995493
2788		80	20		0.995493
2789			20	80	0.995493
2792	20			80	0.995493
2794		80		20	0.995493
2795	60		40		1.0
2798			40	60	1.0
2801	25		75		0.996473
2804	75		25		0.996473
2805		25		75	0.996473
2806	75	25			0.996473
2809			25	75	0.996473
2812		25	25	50	0.995533
2813	50		50		1.0
2814		75	25		0.996473
2815	50			25	0.995533
2819	25		75		0.996473
2821		33		66	0.997452
2824	33	66			0.997452
2825			33	66	0.997452
2829	33			66	0.997452
2830		33	66		0.997452
2833	66	33			0.997452
2834			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain