SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene359

Length: 1548 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene359

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH	-	-	92%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	99%
Blast2go	ap2 domain-containing transcription factor	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 381 - 606

Fln protein: SSIGDHQHTSTFRWKPMRRN*GNENMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGDSPLQVEAAAPLQIEAAHNSQSRSHNDNAKDGNNSTSNDSHHNNNVVGSMSDKIAQDWQLMDSNSEQDQHKVFNNWVVENEDRKPDQSFIESLQLGPHSHSAVLHDLIGLDSSTAADSDQSNNEETSRLLTDISGGNNSLLTMSNASNTGPVESPVNSASENEEGHHRKIPVYDNMMPAGEFPQALFFSSPQQASKLVKYENGSTTLSPWMIPPNTVPPLQSRPNLSVGHLPMFALWNE*

Protein Length: 382

Fln nts: TCTCAAGTATTGGGGACCATCAACACACATCAACTTTCCGCTGGAAACCTATGAGAAGAAATTGAGGAAATGAAAACATGACCAGGCAAGAGTATGTGGCAAATTTAAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGGCTTCTGTGTACCGTGGTGTTACAAGGCATCATCAGCATGGGAGGTGGCAAGCACGCATTGGGAGGGTAGCGGGCAACAAGGATCTATACCTTGGGACATTCAGTACCCAGGAGGAGGCTGCAGAGGCCTATGATATTGCAGCCATAAAATTCCGAGGAATTAGTGCAGTGACAAATTTTGATATCAGCAAATATGATGTCCAACGGATATGTTCTAGTAGCACATTGATTGCTGGAGATTTAGCCAAGCGCAACAAAGAAATTGAACAATCGAGCGAGCCCAGTGGGGACAGCCCACTTCAGGTCGAAGCAGCAGCCCCTCTCCAGATCGAAGCAGCTCATAATTCTCAGTCCAGGTCTCACAATGACAACGCCAAGGATGGGAACAATAGCACTAGTAACGATAGTCATCATAATAATAATGTTGTTGGGTCTATGAGTGATAAAATTGCTCAAGATTGGCAGCTTATGGATTCCAATTCCGAGCAAGACCAACACAAGGTGTTCAATAATTGGGTGGTGGAGAACGAGGATCGAAAGCCAGACCAATCGTTTATTGAATCACTTCAGTTGGGACCCCATTCTCATTCTGCAGTTCTCCATGATTTGATTGGGTTGGATTCATCTACAGCAGCAGATTCTGATCAGTCCAATAACGAGGAAACTAGTCGTTTGCTCACTGATATCTCTGGTGGTAACAATTCTCTTCTCACAATGAGCAATGCATCTAATACAGGCCCCGTGGAGAGCCCTGTAAATTCTGCTAGCGAGAATGAAGAGGGCCACCATCGCAAAATCCCGGTCTATGACAATATGATGCCAGCAGGAGAATTCCCCCAAGCCTTGTTCTTCTCATCCCCGCAGCAAGCTTCGAAGCTCGTGAAATATGAGAATGGCAGTACCACTCTCAGTCCATGGATGATTCCACCAAATACAGTACCACCACTACAATCAAGGCCCAATCTCTCTGTGGGGCATTTGCCCATGTTTGCATTATGGAATGAATGA___ATGTGATTTGGCTGTAAAATACTAGCGGAAGTAATTATCTCTGTGGAGATTGATGCACCTGAGTGATGTGTATAACCTGAAAAAATCAATTTTGCATTCATCTCATTTTGAATATCGCAGAGTAACAACAGCGAGCTGGATCGATATGTGCAGCTCGTTGAATTTTGTCAGTGTTCTGAGATTTACCAATTTCAGGGTTACTGGAAAACCTAGATGGTCTCCGGCCACTATGTTATTCAAGTCGGAAACTTCCAATAATCAGATCCTGGGGTTCTCGATTATGGGGTTAGTATCTCTCGAAAGCTTCGCGATTTGATTGATTGCATATTCCAGAAGTTTGAGGCAAAAGAAAATATTGAAAACCTTTTGTATACTGTGATCTCAAATGATATAGAAAAGTGTT

Fln Alignment:

Contig359___ENMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGDSPLQVEAAAPLQIEAAHNSQSRSHNDNAKXXXXXXXXXXXXXXXXXXXMSDKIAQDWQLMDSNSEQDQHKVFNNWVVENEDRKPDQSFIESLQLGPHSHSAVLHDLIGLDSSTAADSDQSNNEETSRLLTDISGGNNSLLTMSNASNTGPVESPVNSASENEEGHHRKIPVYDNMMPAGEFPQALFFSSPQQASKLVKYENGSTTLSPWMIPPNTVPPLQSRPNLSVGHLPMFALWNE
Q76H96_____________KNMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGDSPLQIEAAAPLQIEAAHNSQSRSHNDNAKDGNNSTSNDSHHNNNVVGSMSDKIAQDWQLMDSNSEQDQHKVFNNWVVENEDRKPDQSFIESLQLGPHSHSAVLHDLIGLDSSTAADSDQSNNEETSRLLTDISGGNNSLLTMSNASNTGPVESPVNSASENEEGHHRKIPVYDNMMPAGEFPQALFFSSPQQASKLVKYENGSTTLSPWMIPPNTVPPLQSRPNLSVGHLPMFALWNE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1171		90		10	0.90298
1202	88		11		0.923564
1308	11			88	0.923564
1310			11	88	0.923564
1350	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1136	1148	GAAT GAAT GAAT G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain