SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene348

Length: 1784 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene348

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana] gb\|AAU05478.1\| At1g13130 [Arabidopsis thaliana] gb\|AEE28973.1\| Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	hydrolyzing o-glycosyl	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Pentapeptide repeat	IPR001646	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB4

Fln msg:

Fln protein: MALQSVKALALLLLLFSLHKSASSSALYASSRWIVDENGCRVKLACVNWASHVDIMVAEGLDKKPVDDITANIRAMGFNCVRLTWSLFMFTDSSLGAMTMKKSLRKLNLSDAEVGVATNNPDLLDLPVIEVYKRVVSSLGASGVMAILDNHISRPGWCCSNSDGNGFFGDRDFNPDTWIKGLISVATMFNGTDHVVGMSLRNELRGPKQNQNDWYTFMQKGAEAVHRTNPKVLVILSGLSFDTNLVFLSQKPVNLTFKEKIVFEMHWYAFSDGRAWANGNPNQVCGSVTSSIMSRGGFLITPNKTYTAPLFFSEFGIDQRGTNVNDNRYINCFLAFAAENDLDWAYWALQGSYYIRSGIPALDETYGILNGDWSQPRNSSFLARLSFIQQPFLGPGLSQSSPYQLIYHPSTGLCLQRCSLFGLDITLGPCTEAESWNYSPQGNIFLKGTIFCVEAVGLGKAARLGMFCMGDNTQWSMMSDSQLHLSAKVEDGTTVCLDGSSMPSVVTNKCNCLSGDSSCDPASQWFKIITTTRSSSLVSDI*

Protein Length: 543

Fln nts: GGTTATTCTGCTGCTCACCTGCAGCCACTCCCCAACTCATTTTTTCCTGCAGAAATTCCCCATATCC_-_ATGGCTCTTCAGAGCGTGAAAGCCCTGGCTTTGCTTCTGCTGTTATTCTCATTACACAAATCCGCAAGTAGTTCTGCATTATATGCAAGTTCCAGATGGATAGTGGATGAAAATGGCTGCAGAGTAAAGCTTGCCTGTGTTAATTGGGCTTCACATGTCGACATAATGGTGGCAGAAGGCCTGGACAAAAAGCCAGTCGACGACATAACAGCAAATATCCGAGCAATGGGTTTCAACTGTGTTCGCTTGACTTGGTCCCTCTTCATGTTCACAGATTCTTCCCTTGGAGCCATGACAATGAAGAAATCCTTGAGAAAACTGAACCTCTCGGATGCCGAGGTAGGGGTTGCTACAAATAACCCGGATCTTCTTGATTTGCCTGTCATTGAAGTATATAAAAGAGTTGTTTCGAGCTTAGGCGCCAGTGGGGTTATGGCTATCCTCGATAATCATATCAGCAGGCCAGGCTGGTGCTGCAGCAATTCAGATGGCAATGGGTTCTTTGGAGATAGGGATTTTAATCCAGATACCTGGATCAAAGGCCTAATTTCAGTAGCTACAATGTTTAATGGAACTGACCATGTTGTGGGGATGAGCCTGAGAAACGAATTGAGAGGTCCAAAGCAAAACCAGAACGATTGGTACACATTCATGCAGAAAGGGGCCGAGGCAGTACACAGAACAAACCCTAAAGTGCTCGTTATACTCTCAGGCTTAAGCTTCGATACGAATCTCGTGTTCTTATCTCAGAAACCAGTGAACTTGACCTTCAAGGAAAAAATAGTATTTGAAATGCACTGGTACGCGTTCTCAGATGGCCGGGCCTGGGCCAATGGAAACCCTAACCAGGTCTGTGGCTCCGTGACCTCGAGCATAATGAGTAGGGGTGGTTTTCTCATCACCCCCAACAAGACCTACACTGCTCCTCTGTTTTTTAGTGAATTTGGAATAGATCAGAGGGGCACCAATGTCAATGATAATAGGTATATAAATTGTTTTCTGGCCTTTGCTGCTGAGAATGATCTGGACTGGGCTTATTGGGCCCTGCAGGGCAGTTATTATATCAGATCAGGAATACCGGCGCTTGATGAGACATATGGAATCCTGAATGGGGACTGGAGTCAGCCTAGAAACTCAAGCTTTCTGGCCAGATTGAGCTTTATACAACAGCCATTTCTAGGTCCAGGTTTGTCTCAGAGTTCACCTTATCAATTGATATACCATCCCTCTACAGGACTGTGCCTCCAGAGGTGTTCATTATTTGGGTTAGACATTACACTTGGCCCCTGTACAGAAGCTGAGTCATGGAATTATAGTCCCCAAGGCAACATCTTTCTCAAAGGAACTATTTTCTGCGTGGAAGCTGTTGGACTAGGAAAGGCAGCAAGGCTGGGTATGTTCTGTATGGGTGACAATACCCAATGGAGCATGATGTCTGATTCTCAATTGCATTTATCTGCAAAGGTAGAAGACGGAACTACAGTATGTCTTGATGGTTCATCTATGCCATCTGTTGTAACTAACAAATGCAATTGTTTGAGCGGAGATTCTAGTTGTGATCCAGCAAGTCAGTGGTTCAAGATCATCACCACAACCAGATCATCGTCACTTGTGTCAGATATATAA___TAATATCAACGACAGTAGTGCCGATACTATAGAATAACACAACCCTCAATATTGAAGGAAATAACTGTAAAATAACACAACACAAACCTAA

Fln Alignment:

Contig348___RWIVDENG-CRVKLACVNWASHVDIMVAEGLDKKPVDDITANIRAMGFNCVRLTWSLFMFTDSSLGAMTMKKSLRKLNLSDAEVGVATNNPDLLDLPVIEVYKRVVSSLGASGVMAILDNHISRPGWCCSNSDGNGFFGDRDFNPDTWIKGLISVATMFNGTDHVVGMSLRNELRGPKQNQNDWYTFMQKGAEAVHRTNPKVLVILSGLSFDTNLVFLSQKPVNLTFKEKIVFEMHWYAFSDGRAWANGNPNQVCGSVTSSIMSRGGFLITPNKTYTAPLFFSEFGIDQRGTNVNDNRYINCFLAFAAENDLDWAYWALQGSYYIRSGIPALDETYGILNGDWSQPRNSSFLARLSFIQQPFLGPGLSQSSPYQLIYHPSTGLCLQRCSLFGLDITLGPCTEAESWNY-SPQGNIFLKG-TIFCVEAVGLGKAARLGMFCMGDNTQWSMMSDSQLHLSAKVE-DGTT--VCLDGSSMPSVVTNKCNCLSGDSSC----DPASQWFKIITTTRSSS
B8LPB4_____________RWIVDETGGTRVKLACVNWVSHLQPMVTEGLSRQPLKYITSTIVSQGFNCVRLTWATFMVTNPANRNLTVQDSLNSLNLSDAAAAMAVSNPEFLDLTLMDSYKRVVAGLGEAGLMVILDNHISRPQWCCGYNDGNGFFGDADFDPGVWIQGLSAMATAFKGTAAVVGMSLRNELRGSRANAADWYKYMQQGAQAVHDANPDVLVIMSGLNYAADLKFLASKPVSLEFTNKIVYEMHWYSFTDGKAWENMPANKLCGTVTARVNDHTAF-VAKTLSPPAPLFISEFGIDERGSNVGDNRFINCFLAFAAEGDFDWALWTLQGSYYLRNGQPGFEETYGIFNGRWDDLRDPPFVSRLKSLQKPFQESFSSSEPLYKTLYHPATGLCLATSGEGGL--KLDSCDSPTLFEYKSPQGAFTLSDESSTCIAAKGPGLAAELSTQCAASNSKWQRVSSSNLQVSVTLSVNGTSQMLCLDGKSSPQVLTNDCICLK-DSDCRKDENPEMQWFKLITTNRKGS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
810		60		40	1.0
857			10	90	0.90298
1233	85		14		0.993533
1326	88		11		0.923564
1455	85		14		0.993533
1560			18	81	1.0
1567			26	73	1.0
1680		13		86	0.999973
1683			86	13	0.999973
1736	88		11		0.923564
1738		75		25	1.0
1746	62		37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain