SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene344

Length: 2030 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene344
CGGGGGTGTTAAGATGGGGAAACCGGAAGCGGGAAAAATTGTTGTGCGGGGAGCTTGCTGCCATATTGAACCATAAGGGTACACACAAAAATGTAGGGCATTGAAAAACGTGTAACAGATGTAATGCCGGGACTATATATAAGCGTCGTGACCTTGGCTGTCACTCAAATTTTACGTTGTTCATCTCCTGTTATTGATCAAAGTCCGACAAATTTCTGTGATATACTTCCGCTGATAAAAGTCCGACACATTTCTGTGATATATTTCCGCTGATCAAAGTCCGATACTTTTCTGTTTTGCCACAATGGGATATACCAAGGAACAGCTACTAGCTCGTTTACAGGAGCTTGGAATTGCCTTTGAGAGTTATGAACATCCAGTTGTTCTGACAGTTGAAGCACAGGCGAAATACGTTGGACACCTTGAAGGTGGACACAGTAAAAACTTATTTCTAAAGGATAAAAAACACAGACTTTATGTTGTTTCTGCTATGACAACGACAAATGTGGACTTGAAAGTTCTGTCTCAGCGGCTGGGTTTAGGAAAGAGTGGTTTACGCATGGCTCCAGAAGAAACATTAAAAGAAGTGCTTCAGGTACCTTTGGGATGCGTAACACCCTTTGCCTTGTTCAACGAGTCTGCACGGTCAGTTGCACTGCTTCTGGACCATGGTTTCAGAAAAGAAAAGCGTGTCTTCTTCCATCCATTATCAAATGATATGACTATTTCACTTACATCTAATGATCTAGACAAGTTCTTGATGTCGATTGGGAAAGAACTCGCTTATGTGGACTTAGAGGCTGTATTGTCTGTGGGAAAGGATCAACCACCTGATCTTGCTGGTCACGTTCCAATGGAAGTGGTTATAGTCTCTAATCTGCAGGCTGAACAAGGACTGGATAATGAGACAGGACCTCTGAATATTATTCATAGAGAGAATGAAACTAGCAAACATAAAGAGAAGGTCAATCCAGATATCAATTCTACAAAGGAAACAAGTGTTAACAAGAAAGAGACAGGAAAGTTCAATCCAGAGTCCAATTCCACAAAGAAAACGAGTGTTGACAAGAAGGGGATGGGTAACGTTGGTTCAACAGCTGCAGTTACTGATGTCAGGGAACTTGTGAACTGCATCTTAGATAAAACAACTGCTGCAGTTCTTTCAGAGATTACAGGGGATGCTATTGAGCAGCATGGGAAAGACCTGGGACCCATTGTAGCTGGAGCAGTCAGGAAACGCTTGGTTCCTGACATGGAGAGTCTCATAATGCTTTTCAAGAATGCAGCATATACACAAGGATTCACTTCAGCCATTGGAAGCCGATCTCTGCCTTAGTGATTTGTTTTTTTCTGTTGATTTCTTCATCTACATTTTGACATCACATAGTTTTAGGTATTTATATCATATGGTTTCACCATTGTATATGTTAATGGCATACTATCAGCTTTTGTTATTACTGATCAAAATTTCCCTATCGTGGAACTATATTTTTTATCGTGGCTTTTTGGCATTTTTTGGGTGGTCTTATAACACATTATCTTTTTACGCGCAGTGTGCTTGGAAGTAATTAGAAATCTGTCCGATCAACTCAAAATCTGATTTGGTCCGTCCTCCATGATTTGATATCTCTCCATTTCCATTGTAGATGATGTTGAAGTGTTTGTCCACGTTGCATAATATTTTTGGTCTGCAGTTGATCCTATTTTCTTTATGTGTCTGAAGGGGAGCATAGTTCTGGATGTTCCATGATATAAGTTGATATGTATGCCCATTGTTTGGATGGACCGATTCCTAGAAAAGTGAATTTTGTTAGAGATAATATTGGGCAGAGGCACTTCGGACTTGAGAATCTGTTGCGGTTTTTGTCATGCTGCTAAATATATTTCTAAAGACATGGCAAAAACCAGAACTGAAGAAATTCAGATTTGATAAAACAATTGAAAACATACCACTTATTTCTGATAATTTATCTATGGGTTGACCACAGATGCAGAATGATGTGTCAATCTTTTAGTTGGATTGTGATAAT

Ace file of the UniGene sp_v2.0_unigene344 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana] dbj\|BAC42869.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63892.1\| unknown protein [Arabidopsis thaliana] gb\|AEE32057.1\| YbaK/aminoacyl-tRNA synthetase-associate	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	aminoacyl-trna synthetase-associated domain-containing protein	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPA3

Fln msg:

Fln protein: MGYTKEQLLARLQELGIAFESYEHPVVLTVEAQAKYVGHLEGGHSKNLFLKDKKHRLYVVSAMTTTNVDLKVLSQRLGLGKSGLRMAPEETLKEVLQVPLGCVTPFALFNESARSVALLLDHGFRKEKRVFFHPLSNDMTISLTSNDLDKFLMSIGKELAYVDLEAVLSVGKDQPPDLAGHVPMEVVIVSNLQAEQGLDNETGPLNIIHRENETSKHKEKVNPDINSTKETSVNKKETGKFNPESNSTKKTSVDKKGMGNVGSTAAVTDVRELVNCILDKTTAAVLSEITGDAIEQHGKDLGPIVAGAVRKRLVPDMESLIMLFKNAAYTQGFTSAIGSRSLP*

Protein Length: 345

Fln nts: CGGGGGTGTTAAGATGGGGAAACCGGAAGCGGGAAAAATTGTTGTGCGGGGAGCTTGCTGCCATATTGAACCATAAGGGTACACACAAAAATGTAGGGCATTGAAAAACGTGTAACAGATGTAATGCCGGGACTATATATAAGCGTCGTGACCTTGGCTGTCACTCAAATTTTACGTTGTTCATCTCCTGTTATTGATCAAAGTCCGACAAATTTCTGTGATATACTTCCGCTGATAAAAGTCCGACACATTTCTGTGATATATTTCCGCTGATCAAAGTCCGATACTTTTCTGTTTTGCCACA_-_ATGGGATATACCAAGGAACAGCTACTAGCTCGTTTACAGGAGCTTGGAATTGCCTTTGAGAGTTATGAACATCCAGTTGTTCTGACAGTTGAAGCACAGGCGAAATACGTTGGACACCTTGAAGGTGGACACAGTAAAAACTTATTTCTAAAGGATAAAAAACACAGACTTTATGTTGTTTCTGCTATGACAACGACAAATGTGGACTTGAAAGTTCTGTCTCAGCGGCTGGGTTTAGGAAAGAGTGGTTTACGCATGGCTCCAGAAGAAACATTAAAAGAAGTGCTTCAGGTACCTTTGGGATGCGTAACACCCTTTGCCTTGTTCAACGAGTCTGCACGGTCAGTTGCACTGCTTCTGGACCATGGTTTCAGAAAAGAAAAGCGTGTCTTCTTCCATCCATTATCAAATGATATGACTATTTCACTTACATCTAATGATCTAGACAAGTTCTTGATGTCGATTGGGAAAGAACTCGCTTATGTGGACTTAGAGGCTGTATTGTCTGTGGGAAAGGATCAACCACCTGATCTTGCTGGTCACGTTCCAATGGAAGTGGTTATAGTCTCTAATCTGCAGGCTGAACAAGGACTGGATAATGAGACAGGACCTCTGAATATTATTCATAGAGAGAATGAAACTAGCAAACATAAAGAGAAGGTCAATCCAGATATCAATTCTACAAAGGAAACAAGTGTTAACAAGAAAGAGACAGGAAAGTTCAATCCAGAGTCCAATTCCACAAAGAAAACGAGTGTTGACAAGAAGGGGATGGGTAACGTTGGTTCAACAGCTGCAGTTACTGATGTCAGGGAACTTGTGAACTGCATCTTAGATAAAACAACTGCTGCAGTTCTTTCAGAGATTACAGGGGATGCTATTGAGCAGCATGGGAAAGACCTGGGACCCATTGTAGCTGGAGCAGTCAGGAAACGCTTGGTTCCTGACATGGAGAGTCTCATAATGCTTTTCAAGAATGCAGCATATACACAAGGATTCACTTCAGCCATTGGAAGCCGATCTCTGCCTTAG___TGATTTGTTTTTTTCTGTTGATTTCTTCATCTACATTTTGACATCACATAGTTTTAGGTATTTATATCATATGGTTTCACCATTGTATATGTTAATGGCATACTATCAGCTTTTGTTATTACTGATCAAAATTTCCCTATCGTGGAACTATATTTTTTATCGTGGCTTTTTGGCATTTTTTGGGTGGTCTTATAACACATTATCTTTTTACGCGCAGTGTGCTTGGAAGTAATTAGAAATCTGTCCGATCAACTCAAAATCTGATTTGGTCCGTCCTCCATGATTTGATATCTCTCCATTTCCATTGTAGATGATGTTGAAGTGTTTGTCCACGTTGCATAATATTTTTGGTCTGCAGTTGATCCTATTTTCTTTATGTGTCTGAAGGGGAGCATAGTTCTGGATGTTCCATGATATAAGTTGATATGTATGCCCATTGTTTGGATGGACCGATTCCTAGAAAAGTGAATTTTGTTAGAGATAATATTGGGCAGAGGCACTTCGGACTTGAGAATCTGTTGCGGTTTTTGTCATGCTGCTAAATATATTTCTAAAGACATGGCAAAAACCAGAACTGAAGAAATTCAGATTTGATAAAACAATTGAAAACATACCACTTATTTCTGATAATTTATCTATGGGTTGACCACAGATGCAGAATGATGTGTCAATCTTTTAGTTGGATTGTGATAAT

Fln Alignment:

Contig344___MGYTKEQLLARLQELGIAFESYEHPVVLTVEAQAKYVGHLEGGHSKNLFLKDKKHRLYVVSAMTTTNVDLKVLSQRLGLGKSGLRMAPEETLKEVLQVPLGCVTPFALFNESARSVALLLDHGFRKEKRVFFHPLSNDMTISLTSNDLDKFLMSIGKELAYVDLEAVLSVGKDQPPDLAGHVPMEVVIVSNLQAEQGLDNETGPLNIIHRENETSKHKEKVNPDINSTKETSVNKKETG-----------KFNPESNSTKKTSVDKKGMGNVGSTAAVTDVRELVNCILDKTTAAVLSEITGDAIEQHGKDLGPIVAGAVRKRLVPDMESLIMLFKNAAYTQGFTSAIGSRSLP
A9NPA3_____________MGYTKEQLLARLQELGVAFESYEHPVVLTVEAQAKYIGHLEGGHSKNLFLKDKKHRLYVVSAMTTTNVDLKVLSQRLGLGKSGLRMAPEETLKEVLQVPLGCVTPFALFNESARSVALLLDHGFKKQKHVFFHPLSNDMTISLTTNDLDKFLMSIGKEPAYVDLEAVVSVGKDQLPDLAVYVPMELVIVSNLHAEQGPDNETGPLNIIHRENETSKHKEKVNPDSNSTKKTSINKKETGTVGSTATITNEKFNPESNSTKKMSIDKKGIGTVGSTAAVTDVGELVNCILDKTTAAVLSEITADAIEQHGKDLGPIVAGAVRQRLVPDMESLIMLFKNASYTQGFTSGIGSRSLP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1864	10			90	0.90298
1866		30		10	1.0
1867		30	10	60	1.0
1868		30	70		1.0
1869	80	20			0.999996
1870	20		60		0.999999
1874		85	14		0.993533
1878		85		14	0.993533
1879	85		14		0.993533
1880	85			14	0.993533
1883	14			85	0.993533
1884		85	14		0.993533
1886	14	85			0.993533
1887			85	14	0.993533
1890			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain