SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene330

Length: 2203 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene330
TACTATGATGAGGAGGAAGAACAGTGAATAACAAACAGAATATTGATATTTCCAGAGCTCAGCCAGGGCCATGGCCATGGGATTCTGTAGCCCCACGACAGCATACATCGGCAGGCCCAGCACAGGCATTTTCTTCAATGCGGGGCATCCCAGCCGGTCGCGAGTTCGACTCCCCGGAAGGTGCGTAGGGCTTCCCATGGTTGTCTATTCCGCAGACACGCTCACGGCGAGTTCGCAGCACGGGGAGAACAGGAAGCACGCAGTCCGCGGTACTGATGAGAAAGTGGATTTGAAGTCGTGGATGCACCGGCATGGCCTTCCGCCTTGCAAGGTTACGCTGAAGGAAAGGCCGTCGCCAGACGGGAAGCAGAAACCCATTAAGTACGTCGCTGCCAGCGAAGATCTCCAGCCGGGGGACGTGGCATTTTCTGTTCCAAACTCGCTTGTCGTCACGCTGGAAAGAGTGCTGGGAAACGAAACTATTGCGGAGTTGCTTACTACAAACAAGCTTTCAGAGTTAGCCTGCTTAGCATTATATTTGATGTATGAGAAAAAGCAAGGCAAACAGTCTTTCTGGCACTGTTTCATCCGTGAGCTTGATCGGCAGCGAGGAAGAGGGCAGCTAGCTATTGAGTCCCCACTTTTATGGTCATCAGAGGAGTTAAACTATTTTACTGGTAGTCCAATGAAGGAAATTGTGTTGGAAAGGAGTGCAGGCATTAAGAAAGAATATGAAGAGCTTGATACCATCTGGTTTATGGCGGGTTCATTGTTTAAGCAATATCCCTATGACATCCCTACTGAGGCTTTTCCATTTGAAATTTTCAAGCAAGCATTTGTTGCAGTTCAGTCTTGTGTTGTGCACTTGCAGAATGTCAGTTTAGCACAAAGGTTTGCTTTGGTTCCACTAGGGCCACCTCTTCTATCCTACAAGAGCAACTGTAAAGCAATGTTGAAAGCTGTAGGTGATTTTGTCCAACTGGAAGTAGACCGTGAATACAAAGCAGGAGAACCAATTGTTGTCTGGTGTGGCCCTCAGCCAAATGCAAGATTGTTGTTGAATTATGGTTTTGTGGATGAAGATAACCCTCATGACCGTCTTATAGTGGAGGTATCACTGGATACAAAGGACCCTCTGTACCAGGACAAAAGAATTATTGCACAGAGAAATGGCAAACTGTCTGTGCAGACATTTAATATATACATTGGAAGGGAAAAGGAAGCTGTCTTAGATATACTTCCCTACTTACGACTTTCCTATGTATCAGATCCTTCTGAGATGCAGTCAGTTTTATCCTCGCAAGGTCCTGTCTGTCCAGTAAGCCCATGTACAGAAAGAGCAGTTTTGGACCAGTTATCCAGATACTTCAAAGAACGACTTGCGGGTTATCCAACAACTGCTAGCGAAGATGAAATAGTGCTTGCGGATCCGACAACAAACGCAAAAAGGAAGGTGGCAACGCAGTTGGTATTAATAGAGAAGAAAATGCTGAATTCATGTCTAGCAGCAGTTAATGAAATAATTGATCAGCTACCTGATCTTGCTGTGACTCCATGTCCAAGTCCTTACAGTCCTATAATGAAATGATTGTTGTTTGGGATCTAATTGTGACATGTCATGCAGTAAGGGCCTTGCTGTAGGTCATTTCATCCTGTCCGTATTGTAACAACAGATATCCAGAGGGTTTGTTTTTGGCTGAAGTCTTGGAATATAAAGCTTCCTCTACGTACAGGGATGTTTTCCTTAATATGCACATTGCAGTTAATGGAAAGGTACAAAGATATGCAAGTGAATTTCCTGAAAGAAGTGGAGAATAAATGATGACCCAATGCTTTGAAATGTTGGTGGTGAAAACATTAGAGGAATCATTTTCGTTGGAGTCGAAAAGTTTCCACGAGGTACTGTGGAAAGAAACCATCGATTTCCTCTAGTATTCTATTTCTAGAAAAGATTGAAATATGTATCTTTGCCTATTCATATATGAGGTCCATTTCAATCTTGTTGTAAAGATGGATATTCTAATAATACCATGTTTGCTTGTATATGAAATTTGCTTTCGTCTCTTAATGGCATGGAACACTACATGGGGAACCAGATATTTATTTCATCTTGGTGAACAGTACTCCCTTAAGGGTATTCTTTGGACTAATGCCAAATAAACTTCATTAAAGGCTATTTTGCAAATGCTGCTATAACAGCGTG

Ace file of the UniGene sp_v2.0_unigene330 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9N8U9_POPTR	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	rubisco methyltransferase family protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rubisco LS methyltransferase, substrate-binding domain	IPR015353	-	0.0	-
Sma3	SET domain	IPR001214	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD7

Fln msg:

Fln protein: MAMGFCSPTTAYIGRPSTGIFFNAGHPSRSRVRLPGRCVGLPMVVYSADTLTASSQHGENRKHAVRGTDEKVDLKSWMHRHGLPPCKVTLKERPSPDGKQKPIKYVAASEDLQPGDVAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKQSFWHCFIRELDRQRGRGQLAIESPLLWSSEELNYFTGSPMKEIVLERSAGIKKEYEELDTIWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVSLAQRFALVPLGPPLLSYKSNCKAMLKAVGDFVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDILPYLRLSYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFKERLAGYPTTASEDEIVLADPTTNAKRKVATQLVLIEKKMLNSCLAAVNEIIDQLPDLAVTPCPSPYSPIMK*

Protein Length: 507

Fln nts: TACTATGATGAGGAGGAAGAACAGTGAATAACAAACAGAATATTGATATTTCCAGAGCTCAGCCAGGGCC_-_ATGGCCATGGGATTCTGTAGCCCCACGACAGCATACATCGGCAGGCCCAGCACAGGCATTTTCTTCAATGCGGGGCATCCCAGCCGGTCGCGAGTTCGACTCCCCGGAAGGTGCGTAGGGCTTCCCATGGTTGTCTATTCCGCAGACACGCTCACGGCGAGTTCGCAGCACGGGGAGAACAGGAAGCACGCAGTCCGCGGTACTGATGAGAAAGTGGATTTGAAGTCGTGGATGCACCGGCATGGCCTTCCGCCTTGCAAGGTTACGCTGAAGGAAAGGCCGTCGCCAGACGGGAAGCAGAAACCCATTAAGTACGTCGCTGCCAGCGAAGATCTCCAGCCGGGGGACGTGGCATTTTCTGTTCCAAACTCGCTTGTCGTCACGCTGGAAAGAGTGCTGGGAAACGAAACTATTGCGGAGTTGCTTACTACAAACAAGCTTTCAGAGTTAGCCTGCTTAGCATTATATTTGATGTATGAGAAAAAGCAAGGCAAACAGTCTTTCTGGCACTGTTTCATCCGTGAGCTTGATCGGCAGCGAGGAAGAGGGCAGCTAGCTATTGAGTCCCCACTTTTATGGTCATCAGAGGAGTTAAACTATTTTACTGGTAGTCCAATGAAGGAAATTGTGTTGGAAAGGAGTGCAGGCATTAAGAAAGAATATGAAGAGCTTGATACCATCTGGTTTATGGCGGGTTCATTGTTTAAGCAATATCCCTATGACATCCCTACTGAGGCTTTTCCATTTGAAATTTTCAAGCAAGCATTTGTTGCAGTTCAGTCTTGTGTTGTGCACTTGCAGAATGTCAGTTTAGCACAAAGGTTTGCTTTGGTTCCACTAGGGCCACCTCTTCTATCCTACAAGAGCAACTGTAAAGCAATGTTGAAAGCTGTAGGTGATTTTGTCCAACTGGAAGTAGACCGTGAATACAAAGCAGGAGAACCAATTGTTGTCTGGTGTGGCCCTCAGCCAAATGCAAGATTGTTGTTGAATTATGGTTTTGTGGATGAAGATAACCCTCATGACCGTCTTATAGTGGAGGTATCACTGGATACAAAGGACCCTCTGTACCAGGACAAAAGAATTATTGCACAGAGAAATGGCAAACTGTCTGTGCAGACATTTAATATATACATTGGAAGGGAAAAGGAAGCTGTCTTAGATATACTTCCCTACTTACGACTTTCCTATGTATCAGATCCTTCTGAGATGCAGTCAGTTTTATCCTCGCAAGGTCCTGTCTGTCCAGTAAGCCCATGTACAGAAAGAGCAGTTTTGGACCAGTTATCCAGATACTTCAAAGAACGACTTGCGGGTTATCCAACAACTGCTAGCGAAGATGAAATAGTGCTTGCGGATCCGACAACAAACGCAAAAAGGAAGGTGGCAACGCAGTTGGTATTAATAGAGAAGAAAATGCTGAATTCATGTCTAGCAGCAGTTAATGAAATAATTGATCAGCTACCTGATCTTGCTGTGACTCCATGTCCAAGTCCTTACAGTCCTATAATGAAATGA___TTGTTGTTTGGGATCTAATTGTGACATGTCATGCAGTAAGGGCCTTGCTGTAGGTCATTTCATCCTGTCCGTATTGTAACAACAGATATCCAGAGGGTTTGTTTTTGGCTGAAGTCTTGGAATATAAAGCTTCCTCTACGTACAGGGATGTTTTCCTTAATATGCACATTGCAGTTAATGGAAAGGTACAAAGATATGCAAGTGAATTTCCTGAAAGAAGTGGAGAATAAATGATGACCCAATGCTTTGAAATGTTGGTGGTGAAAACATTAGAGGAATCATTTTCGTTGGAGTCGAAAAGTTTCCACGAGGTACTGTGGAAAGAAACCATCGATTTCCTCTAGTATTCTATTTCTAGAAAAGATTGAAATATGTATCTTTGCCTATTCATATATGAGGTCCATTTCAATCTTGTTGTAAAGATGGATATTCTAATAATACCATGTTTGCTTGTATATGAAATTTGCTTTCGTCTCTTAATGGCATGGAACACTACATGGGGAACCAGATATTTATTTCATCTTGGTGAACAGTACTCCCTTAAGGGTATTCTTTGGACTAATGCCAAATAAACTTCATTAAAGGCTATTTTGCAAATGCTGCTATAACAGCGTG

Fln Alignment:

Contig330___AMAMGFCSPTTAYIGRPSTGIFFNAGHPSRSRVRLPGRCVGLPMVVYSADTLTASSQHGENRKHAVRGTDEKVDLKSWMHRHGLPPCKVTLKERPSPDGKQKPIKYVAASEDLQPGDVAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKQSFWHCFIRELDRQRGRGQLAIESPLLWSSEELNYFTGSPMKEIVLERSAGIKKEYEELDTIWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVSLAQRFALVPLGPPLLSYKSNCKAMLKAVGDFVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDILPYLRLSYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFKERLAGYPTTASEDEIVLADPTTNAKRKVATQLVLIEKKMLNSCLAAVNEIIDQLPDLAVTPCPSPYSPIMK
A9NUD7_____________AVAMGFCSPTTTCIGRPRTGIFLNAGHPGRSRVRLPGRCVGFPMVVYSADTLTASSQHGEDKKDAIRGKEEEVDLKSWMHRHGLPPCRVMLKERPSPDGKHKPIKYVAASEDLQPGDVAFSIPNSLIVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGNQSFWRPFIRELDRQRGRGQLAVESPLLWSSEELKYFTGSPMKEIMLERNSGIKREYEELDTVWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVNLARRFALVPLGPPLLSYKSNCKAMLKAVGDSVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDMLPYLRLAYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFRERLAGYPTTASEDEIVLADPTTNPKRQVATQLVLIEKKMLNSCLAAVYEIIDQLPDLAVTPCPSPYSPILK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1400	10		90		0.90298
1475		12		87	0.992554
1526		85	14		0.993533
1528	85		14		0.993533
1529	12	87			0.992554
1533		12		87	0.992554
1534	87	12			0.992554
1537	87		12		0.992554
1542		12		87	0.992554
1543	12			87	0.992554
1544	87	12			0.992554
1547			12	87	0.992554
1648		16		83	0.994512
1778			90	10	0.90298
1779	90			10	0.90298
1832	11		88		0.923564
1833		11	88		0.923564
1834	11			88	0.923564
2193		50		50	1.0
2195	33	66			0.997452
2196		33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain