SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene313

Length: 1100 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SCQ6_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	cytochrome p450	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	suberin biosynthetic process	GO:0010345	Biological Process	71%
Blast2go	very long-chain fatty acid biosynthetic process	GO:0042761	Biological Process	71%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	71%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	71%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	71%
Blast2go	heme binding	GO:0020037	Molecular Function	71%
Blast2go	oxygen binding	GO:0019825	Molecular Function	71%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg: your sequence is shorter than subject: 278 - 528

Fln protein: IDAKLQSALKTIDQFVMEIVSSRRGELRMEKIGISDSRADLLSIFMRCRDKNGVPYSDTFMRGICLSFILAGSDTTSVALSWFFWLLLQHPHVEENILKEIQSILKNRSVDVKPGEPLCFSREELKEMHYLHACLSETMRLYPPVPLDRREAIEDEVLPDGTPMKKGTGIIYIAYAMGRMESIWGRDCMEFKPKRWLNDEGIFVNQSVYKYPVFHAGPRMCIGRDFAYLQMKHVAASILYRYSLKLVNKDEELKYKVGGLTLFMKNGLRVTLQAKGN*

Protein Length: 279

Fln nts: ATCGATGCGAAACTTCAGTCTGCTCTGAAGACCATCGACCAGTTTGTCATGGAGATCGTTTCGTCCAGAAGGGGGGAATTGCGTATGGAGAAAATTGGGATTTCAGATAGTCGTGCAGATTTATTGTCTATCTTTATGAGATGTCGAGACAAAAATGGAGTCCCGTATTCCGACACGTTCATGCGAGGCATTTGTCTGAGCTTCATTCTTGCCGGCAGCGACACAACGTCCGTGGCACTTTCCTGGTTCTTTTGGCTGCTGCTTCAACATCCCCATGTGGAAGAAAATATTCTGAAAGAGATACAAAGCATTTTAAAGAACAGATCAGTTGATGTCAAACCCGGTGAACCGCTTTGTTTCAGCAGGGAGGAGCTGAAAGAAATGCATTATCTGCATGCATGTTTGTCCGAGACAATGAGACTTTACCCTCCTGTGCCATTGGACAGAAGAGAAGCGATAGAGGACGAGGTATTGCCTGATGGGACGCCTATGAAGAAGGGTACTGGTATTATCTACATTGCTTATGCCATGGGACGAATGGAGAGCATCTGGGGCAGAGACTGCATGGAATTCAAGCCAAAAAGATGGCTTAATGATGAGGGTATTTTTGTGAACCAATCTGTTTACAAATATCCTGTTTTTCACGCAGGCCCTCGAATGTGTATAGGGAGAGATTTTGCATATTTACAGATGAAGCATGTAGCAGCATCCATTTTATATCGTTACAGTCTGAAACTGGTTAATAAAGATGAAGAGCTGAAATACAAGGTAGGTGGGTTGACCCTCTTTATGAAAAATGGGCTGCGGGTCACGTTACAAGCAAAGGGTAACTGA___GCCATCAGGGTTTATATGATATATTACAGACTCTCTACGTATATTTGTATTATGAGATTTAGTTCAAGTAATGTACTGTTGTCTTGTGGATCTAAATAACCCATTTATCCCATCCCGCACGTTATAAGCAAGGGTAACTGAGCAATCTGGGTTTATATGATATATTACAAAGTCTCTACGTGTGTTTGTATTATGAGATTTGGTTCAAGTAATGTACTGTTGTCTTGTGGATCAAAATAACCCTCACATGATGGGATTGTGTTTAC

Fln Alignment:

Contig313___IDAKLQSALKTIDQFVMEIVSSRRGELRMEKIGISDSRA--DLLSIFMRCRDKNGVPYSDTFMRGICLSFILAGSDTTSVALSWFFWLLLQHPHVEENILKEIQSILKNRSVDVKPG-EPLCFSREELKEMHYLHACLSETMRLYPPVPLDRREAIEDEVLPDGTPMKKGTGIIYIAYAMGRMESIWGRDCMEFKPKRWLNDEGIFVNQSVYKYPVFHAGPRMCIGRDFAYLQMKHVAASILYRYSLKLVNKDEELKYKVGGLTLFMKNGLRVTLQAK
B8LLC1_____________IDVKLQSALKIIDEFVMEIVSSRRKQFISAG---SDYKLPEDLLSVFMKSRDEHGFLYSETLLRDVCVNFILAGRDTTSVALSWFFWLLLQHPSVEDKIMEEIYSILEARPNQKQEGNDPVCFSKDELKQMHYLHACLSEAIRLYPPLPLDRKQVSENVVLPDGTPIKKGTVIFYIIYAMGRMESIWGNDCMEFKPERWLN-KGVFLSHPAPKFAVFNGGPRLCLGKDFAYLQMKYLAASVLYCFKVRAADSIESVESKL-GVTLYMKGGFRVTLHAR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
606	80		20		1.0
682			62	6	1.0
786		50		50	1.0
874	61		38		1.0
884	15		84		0.999986
938		71		28	1.0
948		77	22		0.999999
1007	80		20		0.995493
1019	20		80		0.995493
1028		20		80	0.995493
1043	20			80	0.995493
1044	20	80			0.995493
1047		20	80		0.995493
1072	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain