SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene310

Length: 2112 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene310
TACTATGGGGACGGCGACGGGAATCCCGACGTTTCTTGTCTGTCAATTGACATCCGTCTGTCCTGACTGAGTTCTCCGCAAGAGGATATAGAGAGAGATATGGTGAAGCCATTGAATGAATAGTTTATGGAAGCCTTGAGAAGCTTCGGCCATGGATTCTTGTCTCACCGATGATCGAATCAGTTGTGTCTGATGCCTTAGTTTGTTGAAGGGAAAAATAGGATTTGCTGTTGAAGTTAGTGCAGAAGTATTTGGTGTTATGAGCTGTTTCAGGGTGTTTTCTGGTCATTTTTGCAGTGTAAAACAGAGAACTTTAACGTAACTTTGTTAATGTGTTCAAATTTATTGTAAATTTTTAGGGATTTGTGTGTTTCTGAAAGATTGGATGTGTTTTTGATCGGTTGGAGACGAAAACCGCTGTGGAAATGGTTATTTAGTGGTTTCTGCAGGCCTTTCTCTGTAAATAGGAAGTTTCTTCCAAATCCGGGTTTTTTTGTGAGGTTGGGGAGAAATATTAGAAGATTCATTCAACTTTAAACAGGAGGCCGTTAGGCCGTTACATTAGGTGCAGTTCTTTTAAAGATACGCGTGATACCAATACTTATTAAAAAAGATTCCTGTAAATTTGTCAAGATCCATGAAGTTTTAGATGGTCAAGCCCTGGTGTTTGGCTCATCGAAGCATAACGGCTGGGAAATCTGTATAGTGTAATAAAGACCTGAATGTGAATAGTGAAATGAAGAGCTTCGCTGCATTTGAAATAAGATGATACTGTCGGGATTTGCAGTTTCGAAATTATAGTTGACATTGTAAGAATGGCACTCAGCTTCGACTGTGTGTCGAGTCTTTTGTGTGGAGAGGATGCCAGCGAAGTCGCGTGGGACGACGAGGTAGGGAGTTCAAGAGTAGAAGACGAAAATGTCGAGCGTTTTCAGCAACTGGATCTTGCTTTCTTGCCAGACTTTCCGGTGGAGGACGATGAGACCATTGCTTTCCTGGTGCAAAAGGAGTGGGATCATCTGCCTCGAGAAGACTACCTGGAACGTTATCGGAACCGCGTTTTGGACGTTACGGCTCGGCAGGATGCCATAAGCTGGATTCGCAAGGTTCATTCTCATTACAATTTCAGACCGCTTACAGCTTATTTATCTGTAAACTACCTGGATCGATTCCTGTCGAACCACGAGTTACCGCAAGGTGTAGGCTGGCCGCTTCAGTTATTATCGGTTGCCTGCTTATCACTCGCCGCTAAAATGGAGGAAACAGAAGTTCCGCTTCTTCTTGATCTACAGGTTGGGGACTCGAAATTCGTATTCGAAGCTCGGACAATACGCAGAATGGAATTGTTGATCATGACTACATTAAAATGGATTTTACACTCCATTACGCCGTTTAACTTCATTGACTACTATTTGTACAGACTTCCCGGTCACAAATCTGTGCCCGGGGCCTTGATTTCTCGGGCAATGGAGCTCATTGTCAGTACTAATCGAGTCATCGATTTCTTGGACCATCGGCCATCGGCAATTGCTGGAGCAGCCGTTTTGTGCGCTGCGGAGGAAGTTTTGCAGATAGAATCCGCAGATTACAAAAATGCTATAATGTCTTCCATTGCCGTCAACAAAGAAAAGATCTTTAGCTGCTATGATCTGATGCAGGAACTTCTGATCGACTTCTGCTCAACACCAAAGAAGTCTCTAAGTGCCCCGCCGCAGAGTCCAGTAGGAGTGCTGGACGCGGCTGCCTGTGTTAGCTGTGACAGTACTGAAAACACAGCTGGTTCTGTGCAATTTATAGCGAAAAGAAGAAGAATAAATGGTCCATTACTATGCATGGATGCAGATCAAAGGTGGTAAAAACAGAAATCCAAAGGTGGTAAAAACAGAAATCCAAGTACTTTATTACAAGCCACGTTAAATTGCTAACTGGGATTTCAAATCTCGATCGGCACAACTCAGGCGTGAGATTGTTATTTATGTGATAATTATATCGTGATTGTGAATTATGAGTCATAAGTTATAAAAAGTATTGGCGTGGTGAGCTTGTTGTAGGCTGATTGGTATATTATACAGAGGCAGAGCAGGAGTTTTTGGGTTTGGTATTGTGAAAGGC

Ace file of the UniGene sp_v2.0_unigene310 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin D protein [Physcomitrella patens] emb\|CAD21955.1\| cyclin D [Physcomitrella patens]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cyclin d protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin D	IPR015451	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABS8

Fln msg: your sequence is longer than subject: 347 - 200

Fln protein: MALSFDCVSSLLCGEDASEVAWDDEVGSSRVEDENVERFQQLDLAFLPDFPVEDDETIAFLVQKEWDHLPREDYLERYRNRVLDVTARQDAISWIRKVHSHYNFRPLTAYLSVNYLDRFLSNHELPQGVGWPLQLLSVACLSLAAKMEETEVPLLLDLQVGDSKFVFEARTIRRMELLIMTTLKWILHSITPFNFIDYYLYRLPGHKSVPGALISRAMELIVSTNRVIDFLDHRPSAIAGAAVLCAAEEVLQIESADYKNAIMSSIAVNKEKIFSCYDLMQELLIDFCSTPKKSLSAPPQSPVGVLDAAACVSCDSTENTAGSVQFIAKRRRINGPLLCMDADQRW*

Protein Length: 348

Fln nts: TACTATGGGGACGGCGACGGGAATCCCGACGTTTCTTGTCTGTCAATTGACATCCGTCTGTCCTGACTGAGTTCTCCGCAAGAGGATATAGAGAGAGATATGGTGAAGCCATTGAATGAATAGTTTATGGAAGCCTTGAGAAGCTTCGGCCATGGATTCTTGTCTCACCGATGATCGAATCAGTTGTGTCTGATGCCTTAGTTTGTTGAAGGGAAAAATAGGATTTGCTGTTGAAGTTAGTGCAGAAGTATTTGGTGTTATGAGCTGTTTCAGGGTGTTTTCTGGTCATTTTTGCAGTGTAAAACAGAGAACTTTAACGTAACTTTGTTAATGTGTTCAAATTTATTGTAAATTTTTAGGGATTTGTGTGTTTCTGAAAGATTGGATGTGTTTTTGATCGGTTGGAGACGAAAACCGCTGTGGAAATGGTTATTTAGTGGTTTCTGCAGGCCTTTCTCTGTAAATAGGAAGTTTCTTCCAAATCCGGGTTTTTTTGTGAGGTTGGGGAGAAATATTAGAAGATTCATTCAACTTTAAACAGGAGGCCGTTAGGCCGTTACATTAGGTGCAGTTCTTTTAAAGATACGCGTGATACCAATACTTATTAAAAAAGATTCCTGTAAATTTGTCAAGATCCATGAAGTTTTAGATGGTCAAGCCCTGGTGTTTGGCTCATCGAAGCATAACGGCTGGGAAATCTGTATAGTGTAATAAAGACCTGAATGTGAATAGTGAAATGAAGAGCTTCGCTGCATTTGAAATAAGATGATACTGTCGGGATTTGCAGTTTCGAAATTATAGTTGACATTGTAAGA_-_ATGGCACTCAGCTTCGACTGTGTGTCGAGTCTTTTGTGTGGAGAGGATGCCAGCGAAGTCGCGTGGGACGACGAGGTAGGGAGTTCAAGAGTAGAAGACGAAAATGTCGAGCGTTTTCAGCAACTGGATCTTGCTTTCTTGCCAGACTTTCCGGTGGAGGACGATGAGACCATTGCTTTCCTGGTGCAAAAGGAGTGGGATCATCTGCCTCGAGAAGACTACCTGGAACGTTATCGGAACCGCGTTTTGGACGTTACGGCTCGGCAGGATGCCATAAGCTGGATTCGCAAGGTTCATTCTCATTACAATTTCAGACCGCTTACAGCTTATTTATCTGTAAACTACCTGGATCGATTCCTGTCGAACCACGAGTTACCGCAAGGTGTAGGCTGGCCGCTTCAGTTATTATCGGTTGCCTGCTTATCACTCGCCGCTAAAATGGAGGAAACAGAAGTTCCGCTTCTTCTTGATCTACAGGTTGGGGACTCGAAATTCGTATTCGAAGCTCGGACAATACGCAGAATGGAATTGTTGATCATGACTACATTAAAATGGATTTTACACTCCATTACGCCGTTTAACTTCATTGACTACTATTTGTACAGACTTCCCGGTCACAAATCTGTGCCCGGGGCCTTGATTTCTCGGGCAATGGAGCTCATTGTCAGTACTAATCGAGTCATCGATTTCTTGGACCATCGGCCATCGGCAATTGCTGGAGCAGCCGTTTTGTGCGCTGCGGAGGAAGTTTTGCAGATAGAATCCGCAGATTACAAAAATGCTATAATGTCTTCCATTGCCGTCAACAAAGAAAAGATCTTTAGCTGCTATGATCTGATGCAGGAACTTCTGATCGACTTCTGCTCAACACCAAAGAAGTCTCTAAGTGCCCCGCCGCAGAGTCCAGTAGGAGTGCTGGACGCGGCTGCCTGTGTTAGCTGTGACAGTACTGAAAACACAGCTGGTTCTGTGCAATTTATAGCGAAAAGAAGAAGAATAAATGGTCCATTACTATGCATGGATGCAGATCAAAGGTGGTAA___AAACAGAAATCCAAAGGTGGTAAAAACAGAAATCCAAGTACTTTATTACAAGCCACGTTAAATTGCTAACTGGGATTTCAAATCTCGATCGGCACAACTCAGGCGTGAGATTGTTATTTATGTGATAATTATATCGTGATTGTGAATTATGAGTCATAAGTTATAAAAAGTATTGGCGTGGTGAGCTTGTTGTAGGCTGATTGGTATATTATACAGAGGCAGAGCAGGAGTTTTTGGGTTTGGTATTGTGAAAGGC

Fln Alignment:

Contig310___MEETEVPLLLDLQVGDSKFVFEARTIRRMELLIMTTLKWILHSITPFNFIDYYLYRLPGHKSVPGALISRAMELIVSTNRVIDFLDHRPSAIAGAAVLCAAEEVLQIESADYKNAIMSSIAVNKEKIFSCYDLMQELLIDFCSTPKKSLSAPPQSPVGVLDAAACVSCDSTENTAGSVQFIAKRRRINGPLLCMDADQRW
D5ABS8_____________MEETEVPLLLDLQVGDAKFVFEARTIRRMELLIMTTLKWRLHSITPFNFIDYYLYRLPGNKTVPGTLISRAMELIVSTNRVIDFLDHRPSAIAGAAVLCAVEEVLQRESADYRSAIMASIAVNKERIFSCYDLMQELLIDFCSTPKKSLSAPPQSPVGVLDAAACVSCDSTENTAGSVQFIAKRRRINGPLLCMAEDQRW

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
264		50		50	1.0
275	14	85			0.993533
276	85		14		0.993533
278	14	85			0.993533
281			14	85	0.993533
282		14	85		0.993533
285	14			85	0.993533
286	85		14		0.993533
289	85	14			0.993533
292		14	85		0.993533
296		85	14		0.993533
303		16		83	0.994512
490			10	90	0.90298
491	10			90	0.90298
505		10	90		0.90298
507	90	10			0.90298
508		10	90		0.90298
509	90	10			0.90298
511	90		10		0.90298
645		80	20		0.995493
647		20		80	0.995493
648	20			80	0.995493
653	25	25	50		0.995533
658	66		33		0.997452
662	66	33			0.997452
664	33		66		0.997452
666		66	33		0.997452
791		20	80		0.995493
792	80			20	0.995493
794	20	80			0.995493
795			20	80	0.995493
800	75	25			0.996473
801	25			75	0.996473
802	75		25		0.996473
804		25	75		0.996473
805	75			25	0.996473
807			33	66	0.997452
808			33	66	0.997452
811	33		66		0.997452
812	66	33			0.997452
814	33			66	0.997452
816		66	33		0.997452
1621	80		20		0.995493
1622	80	20			0.995493
1623	80		20		0.995493
1660	80		20		0.995493
1866		90		10	0.90298
1867			10	90	0.90298
1868	10			90	0.90298
1869		90	10		0.90298
1875		10		90	0.90298
1879			10	90	0.90298
1883	90	10			0.90298
1884		90	10		0.90298
1896		16		33	1.0
1964	16		83		0.994512
1991	83	16			0.994512
1993		16		83	0.994512
1994	66	16			0.988813
1995		33		66	1.0
1996		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain