SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene307

Length: 1807 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene307

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ACT domain-containing protein 3 [Arabidopsis thaliana] ref\|NP_849896.1\| ACT domain-containing protein 3 [Arabidopsis thaliana] ref\|NP_849897.1\| ACT domain-containing protein 3 [Arabidopsis thaliana] ref\|NP_001031289.1\| ACT domain-containing protein 3 [Ara	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	act domain-containing protein 3	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	77%
Blast2go	amino acid binding	GO:0016597	Molecular Function	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NND6

Fln msg:

Fln protein: MDSVCWPYFDPEYENMEIRMNPPSVSIDNDTCPDYTVIKVDSRNKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGPKRVTSSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISAVLTIFGCNVVAAESWTHNMRVACVVYVTDELSNRPIEDEVRLSTIKERLSNVLKGNDNDTKGVKTDFSMGLTHRERRLHQLMFADRDYECSSDSSDPTLLDENKKPVITIENCNDKGYSVVNIQCRDRPKLLFDTVCTLTDMQYVVFHASITCNLPYALQEYYIRHMDGCTLDTKDEKHRVVKCLEAAIERRASEGLSLELCASDRVGLLSDVTRMFRENGLSVTRADVTTRGDKAINVFYVRDAYSGNLAMNIDMKVVEAMRREIGHTMFLQVKNMPGDIANSLPVDSGSKFRFSFVSLFKAQLDRLSYNFRMIKF*

Protein Length: 467

Fln nts: TTGCTTGTGGTGATACACGTAACGTTCGTACATATGCAGGGGAGCTTATCTTGGCATTCTCAGACTTGGGATATTTATCTCTGAGTCGCTGACGCTGCTGAGAGCAGCATCCCTGGTCGTGCTAGCGCTAGTGCTAGTTCTAGTGGTTGCAGAG_-_ATGGACAGTGTTTGTTGGCCTTATTTTGATCCAGAATATGAAAATATGGAGATTAGGATGAATCCTCCAAGTGTATCAATTGACAATGATACCTGCCCAGACTATACTGTGATTAAGGTGGATAGTAGGAACAAGCATGGTATACTTCTTGAAGTGGTCCAACTTTTGACTGATCTAGATCTAACCATTTCGAAAGCATATATTTCCTCAGATGGTGGATGGTTTATGGATGTGTTTCATGTGACAGACCAGCTAGGGGATAAACTTACAGATGAAAGCATCATTGAATACATACAGCAGTCCTTGGGACCAAAGCGTGTCACTTCCAGTAGAGAGGTGAAGACTTGTTTAGGTAGGATTGTAGGTGTACAATCCATTGGAGAATACACAGCAATAGAGTTGACTGGGACAGATCGCCCTGGTCTTCTTTCAGAAATTTCGGCAGTGCTTACAATCTTTGGTTGCAATGTAGTAGCAGCAGAATCTTGGACCCATAATATGAGAGTAGCATGTGTTGTATATGTAACTGATGAATTATCAAACCGGCCTATAGAGGATGAAGTTCGTCTGTCTACCATTAAGGAACGACTTTCAAACGTGCTTAAAGGGAATGACAATGACACCAAAGGAGTCAAGACAGATTTTTCCATGGGCTTAACTCACCGAGAGAGGCGTCTGCACCAGCTGATGTTTGCTGACAGGGACTATGAGTGTTCTTCTGATTCCTCAGACCCCACTTTGTTGGATGAAAACAAGAAGCCTGTCATTACCATCGAGAACTGCAATGACAAAGGCTATTCTGTGGTTAATATCCAGTGTAGAGACAGGCCAAAGTTGCTGTTTGATACAGTCTGTACTCTGACAGACATGCAGTATGTTGTCTTTCATGCTTCAATCACTTGCAATTTACCTTATGCATTGCAGGAATATTACATTCGGCATATGGATGGTTGTACCCTAGACACAAAAGATGAGAAACACAGAGTTGTCAAGTGCTTGGAGGCTGCAATAGAACGCAGGGCATCTGAGGGCCTGAGTCTTGAGCTGTGTGCAAGCGATAGAGTAGGCCTTCTTTCGGATGTCACTCGCATGTTCCGTGAAAATGGTCTCTCAGTGACAAGAGCAGATGTGACAACCAGAGGGGATAAAGCGATCAATGTATTCTATGTCAGGGATGCTTATTCAGGAAATCTTGCCATGAATATCGATATGAAGGTAGTCGAAGCTATGAGGAGAGAAATTGGCCATACCATGTTTCTGCAGGTTAAGAATATGCCAGGTGACATTGCTAACTCTCTCCCAGTCGATTCCGGATCGAAATTCAGATTTTCTTTTGTTAGTTTATTCAAGGCCCAACTCGATCGTCTCTCATACAATTTTCGTATGATCAAGTTCTGA___ATCTCAATGGCAGAATGCTTACTACTACTAATGCTTCTACTCCTTCTTTGCTGAACTTGATTCCGTGGCCACTTTCGAACCCAATGCTGCTTCATTCGCTTTGTATCTTATAGTGGCAGGCAAGATTATCAGACGAACTTATGTTTGGAGTTATTTAACCTGTATGTATGAATGACTGACTTGGGATAGAAAGGTGTTTCAGACAAGCTCGCTTGTAATGATATCTTACTGGTTATTATCATGCAAAAACTTGTC

Fln Alignment:

Contig307___MDSVCWPYFDPEYENMEIRMNPPSVSIDNDTCPDYTVIKVDSRNKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGPKRVTSSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISAVLTIFGCNVVAAESWTHNMRVACVVYVTDELSNRPIEDEVRLSTIKERLSNVLKGNDNDTKGVKTDFSMGLTHRERRLHQLMFADRDYECSSDSSDPTLLDENKKPVITIENCNDKGYSVVNIQCRDRPKLLFDTVCTLTDMQYVVFHASITCNLPYALQEYYIRHMDGCTLDTKDEKHRVVKCLEAAIERRASEGLSLELCASDRVGLLSDVTRMFRENGLSVTRADVTTRGDKAINVFYVRDAYSGNLAMNIDMKVVEAMRREIGHTMFLQVKNMPGDIA-NSLPVDSGSKFRFSFVSLFKAQLDRLSYNFRMIKF
A9NND6_____________MESVSWPYFDPEYENLERRINPPSVSIDNDTCPDCTLIKVDSANKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGAKRVISSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISAVLTSFSCNVVAAESWTHNMRVACVVYVTDESSNRPIEDEVRLSTIKGQLSNVLKGNDDSTKGVKTDFSMGLTHRERRLHQLMFADRDYECSSDSSNPSLLDENMKPVITVENCNEKGYSVVNIQCRDRPKLLFDTVCTLTDMQYVVFHASITCNLPYALQEYYIRHMDGCTLDTEGEKHRVIKCLEAAIGRRASEGLSLELSASDRIGLLSDVTRMFRENGLSVTRADVTTRGDKAINVFYVRDASSGNLAINIDMKVVEAMRREIGHTMFLQVKNMPGDIAYNSLPIDSRSKFRFSFASLFKAQLDRISYNFRMIKF

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
370	25		75		0.996473
406		80		20	0.995493
466	20	80			0.995493
530		90	10		0.90298
531		90		10	0.90298
537	90			10	0.90298
543		90	10		0.90298
544	90		10		0.90298
555	10		90		0.90298
558		10	90		0.90298
570	10			90	0.90298
597			88	11	0.923564
611			11	88	0.923564
763			87	12	0.992554
765			87	12	0.992554
779	14	85			0.993533
782	85			14	0.993533
783	85			14	0.993533
792			85	14	0.993533
793	85			14	0.993533
916		33	66		0.997452
976	87		12		0.992554
998			20	80	0.995493
1012	83		16		0.994512
1017			83	16	0.994512
1141	20		80		0.995493
1363	16		83		1.0
1401		84		15	1.0
1408	83		16		1.0
1414		81		12	0.999943
1419		13	86		0.999973
1459		18	81		1.0
1512	85		14		0.993533
1515		85		14	0.993533
1518		14		85	0.993533
1545	16			16	0.988813
1581		25		75	1.0
1595	25	75			1.0
1597		85		14	0.993533
1601		66	33		1.0
1604		33		66	1.0
1606		66		33	1.0
1617		33		66	1.0
1620	33		66		1.0
1639	80		20		0.995493
1642		80		20	0.995493
1719	40		60		1.0
1747	60		40		1.0
1763		50		50	1.0
1765		50		50	1.0
1773	50			50	1.0
1780		50		50	1.0
1800	66	33			0.997452
1802	66			33	0.997452
1803	66		33		0.997452
1804	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain