SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene285

Length: 1464 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene285 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL58 [Arabidopsis thaliana] sp\|Q570X5.1\|ATL58_ARATH RecName: Full=RING-H2 finger protein ATL58 dbj\|BAD94869.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE31599.1\| RING-H2 finger protein ATL58 [Arabidopsis thaliana]	-	-	7.0e-34	46%
FL-Next	tr=Putative uncharacterized protein Sb04g022820; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	51%
Blast2go	ring-h2 finger protein atl7-like	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5XUU4

Fln msg:

Fln protein: MTDKSSSCSSHCQPPLPELKLYQAFIFSIPILFYACSSVDFFYMLYLRRRRNAWAAAHMMVQYEARGFTSEPTECGLKKEFRDMLPTVVFNENVLIEDTQCAVCLGDYQINEKLQQLPVCGHTFHMECIDKWFANNTTCPLCRTSLLQAAKVVPLDSPAHIATPLQIDELPQVSFAQQVHPIQDMPSEESPQMEEESSSIDDRFSEEINTTRLDMHEAHIYVTDPQEVHSTGNADAVICAVC*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTCTTCATTTCCACCCGGTATCTTTCCTTTCCGTACATTTTTCTGCAATTGCTTTTGTGGGTATAAGGGGAGGCTGATTACTTTGATGCCCAGTTAGACAGAGCCTGGTAATACTTATTCAGAGCCCCAGAGATCTGCAAAAACCATGGACGGACATTAAGGTCTAAGTTCATCGTATGTATTTGTCCATGGTGATCATTAAACATTACTGGCACCCAGCGTTTGCCAGTTAAAGCCGCCCCAGCAATGTCGGCATTTAGTTTGGAGTTCTGATGATGGTAGGGCGGTGTTGGGGTCATCTATTCAGATTGATTATACCCACATTTGATCGGTAAGTTGTAGTGGCGTTTTAGATTATTAGGTGTGGGATCAGATCACGCCATATTTGGAGTAAAA_-_ATGACCGATAAATCTTCCTCATGTTCTTCACATTGCCAGCCACCTCTCCCCGAGCTTAAGCTGTACCAAGCATTCATATTTTCGATACCTATTCTTTTCTACGCTTGTTCTTCTGTTGACTTTTTCTATATGCTTTACTTGCGGAGGAGGAGAAATGCATGGGCAGCTGCACATATGATGGTTCAATATGAAGCTAGAGGATTCACCTCAGAGCCCACCGAATGCGGTTTGAAGAAGGAATTCAGAGATATGCTACCTACAGTGGTCTTCAATGAAAACGTTTTAATAGAAGACACACAATGTGCTGTGTGTCTTGGGGATTACCAGATAAATGAAAAGCTACAGCAACTACCTGTCTGTGGGCATACCTTTCACATGGAATGCATTGACAAGTGGTTTGCAAACAATACCACATGTCCACTTTGTCGGACTTCACTCCTCCAGGCTGCTAAGGTTGTTCCTTTGGATTCACCAGCACATATTGCAACACCTCTGCAGATTGATGAACTTCCCCAAGTTTCATTTGCACAGCAAGTTCATCCCATTCAAGACATGCCTTCTGAAGAAAGCCCTCAGATGGAGGAGGAGAGTAGCTCTATTGATGACAGATTCTCAGAGGAAATAAATACCACCCGTTTAGATATGCATGAAGCTCATATTTATGTGACAGATCCACAGGAGGTACACTCGACAGGCAATGCAGATGCTGTCATATGTGCAGTTTGCTGA___AATGTGATTCTGAAGGTGGTGGTTGGCCTTTTCCCTCTTTTACCCTTGTCTTATGTCCTGTGCTGCTATAATCTATGAGAGATTATCGTACATGGTTAGAAAGTTGAAAATTTATCACTACTGTTGGAAAGTACAGACCATCTAACACTGAAAATGTTATTTGTTAACATAGCATGACCAGAAAAACGAGATTAGATATGTTGCTTCAAAAAGTTGTGCATTGGAATATTTTGTTGGAAGTTAGAAAAATAAGGCACATGTAGAATTCAGTCCTCTTCTTGTTGTACATTATATCAAGTTATACTTTTCCAG

Fln Alignment:

Contig285___SCSS-----HCQPPLPELKLYQAFIFSIPILFYACSSVDFFYMLYLRRRRNAWAAAHMMVQYEARGFTSEPTECGLKKEFRDMLPTVVFNENVLIEDTQCAVCLGDYQINEKLQQLPVCGHTFHMECIDKWFANNTTCPLCRTSLLQAAKVVPLDSPAHIATPLQ
C5XUU4_____________SCTSPDPPDYCSAESPELKLYQAFIFSVPV-FFTFVLLLFFYLFYLRRRRANWQSLRMRTNNLIRGDNAR-LECGLKKEMREMLPVVIFKESFLIRETQCSVCLADYQPDERLQKIPPCGHTFHISCIDHWLSTNTTCPLCRVSLLPAPKATSIDLDLEAQTAVE

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
311	25		75		0.996473
347			80	20	0.995493
465	50	50			1.0
473	25		75		0.996473
549	80	20			0.999996
920	11		88		0.923564
921	88		11		0.923564
922	11		88		0.923564
1069			16	83	0.999991
1143	90		10		0.90298
1201		54		45	1.0
1263	45		45	9	1.0
1357	88		11		0.923564
1403			87	12	0.992554
1404			12	87	0.992554
1406		87	12		0.992554
1407			87	12	0.992554
1410	87	12			0.992554
1412			75	25	1.0
1413		12	87		0.992554
1414	87	12			0.992554
1415	75		25		1.0
1416	75			25	1.0
1418	87		12		0.992554
1419		12		75	0.975346
1421		66	33		0.997452
1423		33	66		0.997452
1424	33		66		0.997452
1425	33		66		0.997452
1429	66			33	0.997452
1430	66	33			0.997452
1432		33		66	0.997452
1435	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain