SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene272

Length: 2713 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene272
ATGGGGAGGAAAATAGGCAACTATACAACCAAGTACAAGATCTGAAAGGAAGCATAAGAGTGTATTGTCGAGTCAGGCCATTCCTGCCTGGACAGGATGACAGACGATCTACAGTGGATTTTGTTGGAGAAAATGGCACTCTTATATTGTTAATCCCAACAAGCATGGAAAAGATGCACACAAGACATTTTCCTTCAACAAAGTGTTTGCATCATCTGCCACTCAAGAGGAAGTTTTTCTAGATACACAGCCTTTAATCAGATCTGTTTTGGATGGCTACAATGTTTGTATTTTTGCATATGGACAAACAGGCTCCGGAAAGACATATACCATGACTGGTCCACATGTAATTACGGAAGAGACTTGGGGAGTGAACTACAGGGCACTGAACGACTTATTTGAAATCTCTAAAAAGAGGACGGATGTGTTCACGTATCACGTTGGAGTTCAAATGATAGAGATATATAATGAGCAAGTGAGAGATCTTCTTGCCACGGACGGTTCCAACCGGAGGCTAGAAATCCGCAACAATTCTCAGCAGAATGGACTCAATGTACCCGATGCAAATTTGGTATCAGTTACATCCACATTCGACGTTATCAATTTGATGAACATTGGACAAAAGAATCGTGTCGTTGGAGCAACTGCTTTGAATGATCGTAGCAGTCGTTCACACAGTGTTTTGACAGTGCATGTCCAAGGAACAGATTTGACCACAGGGTCCATCCTTCGAGGATGCCTTCATTTGGTGGACCTTGCTGGAAGTGAGAGGGTAGATAAATCTGAGGCTACAGGAGACCGGTTGAAGGAAGCCCAACACATCAATAAATCCCTTTCAGCCCTAGGGGATGTCATTGCTGCACTTGCACAAAAGAGTTCACATGTCCCTTATCGGAATAGCAAGCTAACACAGTTACTTCAAGATTCCTTAGGGGGACAGGCAAAAGCTCTTATGTTTGCCCATATAAGTCCTGAAACAGATGCCTATAATGAGTCACTCAGCACCCTTAAGTTTGCAGAGCGAGTAGCTACCGTTGAACTTGGTGCAGCACGTTCCAATAAAGAAAGTGGAGAGATCCGAGAGCTCAAGGAGCAGATTTATAATTTAAGAGTTGCACTAGCAAAAAAGGAAGCTGAAGTAGAACAGTTCCAAAGTAATCGAAGCACTGAAAAACAAAGGATGAAGGTTGGAGTATCACCATTGCATTCACATAGGCAAAGCAGAGATATTCAAGCACTGTCAAACCGTAGACAGCCAATGGAAGAGGTTGGAAACATAGAGGTTAGAAGCAGTTCCACCGGAAGGCAGAGGAAACCAATCTATGGCAGGGATGTTTTAGGGGAGGGCGCTGATGCAAATTCTCCAAGACCAATCCGTCGATCTTCTCCAGAGAGAAGATCGTTATCTGTTGAAAGGAGATCATTGTCTGCTGATCGTGGAAATCACATAAGGAACAGAGTTAAGCATGATCCATTGGAAGAACAAGAAGTAAGAAAGTGGCAAGACAAGGTGACGGTCAATAAATATTTAACAATTCACACAGCAGCTTCACAGGATGATTCCTTGAGACCAATGGAAGCTTGTGAATTAGCAAAGCAAGACAGCATTTCTGATATGTTCTACCAAAGGTGCCATGCTAATCCAAGGAAAATATATCCAGAGAGAGAAGACAGACAATTCTCGATGGATCACAATGAAGGGTATGGAGGAGTAAAGAGGAATAAAGTTGATGTAAAAGGGAAGAATGAATATCAAGTGCGAAGAACTCCTCACCATGAAACATCAAATACAGATGAATCAGATGTAGATCTGTTTCGAACTAGTGATTTCTCTGAAGCAGATTTGTTGCAATTTAAGGAACTTAATCTTATTGACGTAGCTCCCATACAACATGTTCCACGAATCAGAAAGACAATGCAATCCTCTACAAGGACCACTCATCACATAGAGCGGAGAAGTCCAATCCAAGCAAAAAGCCCTTCTTCAGCAAGCAGATTTGAAACTAAGTTATATGGAGGTGGTGGGCAGCCAAAACCCCGAACAGTGAGGCAGTCAGTTTCTAACCTGCCTTATGTGGGAACAGATGGAAAGAGAACTTCACCTGGAGGGAAATTTAAACCTTGATATCAAGGTGGCTTCCAGTAAGTATCCATTTGACAGTCCATTCCAATGATTTCTACTTTTTGCTCTGGTTGCAATTTGCACCACTTTCACCTCAAGGATCATCTATCGAGTACTATGACATTGCGAGGCAGCCGGTTCTAACTCAGATTGGGGAGTTATCATCCAAACCATCAAAACGATGGCATGGCATGGCCCTGGGTGTTGTTGTTGAGTATCTTTACACATCTGAGCTCATTTGATTATTCTTTTCTTGACTATTTATTGGATCATAAAGAGGTCTAGAGTGCAGTGGAATAGATTATACAGTTTGGGTGTAAGAATGGAATTGCGTCTTATTTTTCCATGTTTTGTAGTGTGATGTACATAATTTGAGCCGACGCTATCGTTGTGATGCTCTTACAGAATCAGTCATATCAGGCTGTTTAAGTTAAGAGGCTTTTGTATTTTTTAGTAGTACACCGGTTATGATTCATTTTGTTGGAAATTTCCTTGGGATCAGTATCTCAACCTATATGCTGTGGTGATTTTGTAGTTGTATACAGTCTACCATCTACAGAAATATCAATCACTTTTTCAAAATTTGTACCT

Ace file of the UniGene sp_v2.0_unigene272 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin-related protein n=1 Tax=Gossypium hirsutum RepID=A4GU96_GOSHI	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	kinesin-4-like	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	aerobic respiration	GO:0009060	Biological Process	65%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	65%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-
Sma3	Telomere end binding protein	IPR011564	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 598 - 509

Fln protein: MTGPHVITEETWGVNYRALNDLFEISKKRTDVFTYHVGVQMIEIYNEQVRDLLATDGSNRRLEIRNNSQQNGLNVPDANLVSVTSTFDVINLMNIGQKNRVVGATALNDRSSRSHSVLTVHVQGTDLTTGSILRGCLHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKALMFAHISPETDAYNESLSTLKFAERVATVELGAARSNKESGEIRELKEQIYNLRVALAKKEAEVEQFQSNRSTEKQRMKVGVSPLHSHRQSRDIQALSNRRQPMEEVGNIEVRSSSTGRQRKPIYGRDVLGEGADANSPRPIRRSSPERRSLSVERRSLSADRGNHIRNRVKHDPLEEQEVRKWQDKVTVNKYLTIHTAASQDDSLRPMEACELAKQDSISDMFYQRCHANPRKIYPEREDRQFSMDHNEGYGGVKRNKVDVKGKNEYQVRRTPHHETSNTDESDVDLFRTSDFSEADLLQFKELNLIDVAPIQHVPRIRKTMQSSTRTTHHIERRSPIQAKSPSSASRFETKLYGGGGQPKPRTVRQSVSNLPYVGTDGKRTSPGGKFKP*

Protein Length: 599

Fln nts: ATGGGGAGGAAAATAGGCAACTATACAACCAAGTACAAGATCTGAAAGGAAGCATAAGAGTGTATTGTCGAGTCAGGCCATTCCTGCCTGGACAGGATGACAGACGATCTACAGTGGATTTTGTTGGAGAAAATGGCACTCTTATATTGTTAATCCCAACAAGCATGGAAAAGATGCACACAAGACATTTTCCTTCAACAAAGTGTTTGCATCATCTGCCACTCAAGAGGAAGTTTTTCTAGATACACAGCCTTTAATCAGATCTGTTTTGGATGGCTACAATGTTTGTATTTTTGCATATGGACAAACAGGCTCCGGAAAGACATATACC_-_ATGACTGGTCCACATGTAATTACGGAAGAGACTTGGGGAGTGAACTACAGGGCACTGAACGACTTATTTGAAATCTCTAAAAAGAGGACGGATGTGTTCACGTATCACGTTGGAGTTCAAATGATAGAGATATATAATGAGCAAGTGAGAGATCTTCTTGCCACGGACGGTTCCAACCGGAGGCTAGAAATCCGCAACAATTCTCAGCAGAATGGACTCAATGTACCCGATGCAAATTTGGTATCAGTTACATCCACATTCGACGTTATCAATTTGATGAACATTGGACAAAAGAATCGTGTCGTTGGAGCAACTGCTTTGAATGATCGTAGCAGTCGTTCACACAGTGTTTTGACAGTGCATGTCCAAGGAACAGATTTGACCACAGGGTCCATCCTTCGAGGATGCCTTCATTTGGTGGACCTTGCTGGAAGTGAGAGGGTAGATAAATCTGAGGCTACAGGAGACCGGTTGAAGGAAGCCCAACACATCAATAAATCCCTTTCAGCCCTAGGGGATGTCATTGCTGCACTTGCACAAAAGAGTTCACATGTCCCTTATCGGAATAGCAAGCTAACACAGTTACTTCAAGATTCCTTAGGGGGACAGGCAAAAGCTCTTATGTTTGCCCATATAAGTCCTGAAACAGATGCCTATAATGAGTCACTCAGCACCCTTAAGTTTGCAGAGCGAGTAGCTACCGTTGAACTTGGTGCAGCACGTTCCAATAAAGAAAGTGGAGAGATCCGAGAGCTCAAGGAGCAGATTTATAATTTAAGAGTTGCACTAGCAAAAAAGGAAGCTGAAGTAGAACAGTTCCAAAGTAATCGAAGCACTGAAAAACAAAGGATGAAGGTTGGAGTATCACCATTGCATTCACATAGGCAAAGCAGAGATATTCAAGCACTGTCAAACCGTAGACAGCCAATGGAAGAGGTTGGAAACATAGAGGTTAGAAGCAGTTCCACCGGAAGGCAGAGGAAACCAATCTATGGCAGGGATGTTTTAGGGGAGGGCGCTGATGCAAATTCTCCAAGACCAATCCGTCGATCTTCTCCAGAGAGAAGATCGTTATCTGTTGAAAGGAGATCATTGTCTGCTGATCGTGGAAATCACATAAGGAACAGAGTTAAGCATGATCCATTGGAAGAACAAGAAGTAAGAAAGTGGCAAGACAAGGTGACGGTCAATAAATATTTAACAATTCACACAGCAGCTTCACAGGATGATTCCTTGAGACCAATGGAAGCTTGTGAATTAGCAAAGCAAGACAGCATTTCTGATATGTTCTACCAAAGGTGCCATGCTAATCCAAGGAAAATATATCCAGAGAGAGAAGACAGACAATTCTCGATGGATCACAATGAAGGGTATGGAGGAGTAAAGAGGAATAAAGTTGATGTAAAAGGGAAGAATGAATATCAAGTGCGAAGAACTCCTCACCATGAAACATCAAATACAGATGAATCAGATGTAGATCTGTTTCGAACTAGTGATTTCTCTGAAGCAGATTTGTTGCAATTTAAGGAACTTAATCTTATTGACGTAGCTCCCATACAACATGTTCCACGAATCAGAAAGACAATGCAATCCTCTACAAGGACCACTCATCACATAGAGCGGAGAAGTCCAATCCAAGCAAAAAGCCCTTCTTCAGCAAGCAGATTTGAAACTAAGTTATATGGAGGTGGTGGGCAGCCAAAACCCCGAACAGTGAGGCAGTCAGTTTCTAACCTGCCTTATGTGGGAACAGATGGAAAGAGAACTTCACCTGGAGGGAAATTTAAACCTTGA___TATCAAGGTGGCTTCCAGTAAGTATCCATTTGACAGTCCATTCCAATGATTTCTACTTTTTGCTCTGGTTGCAATTTGCACCACTTTCACCTCAAGGATCATCTATCGAGTACTATGACATTGCGAGGCAGCCGGTTCTAACTCAGATTGGGGAGTTATCATCCAAACCATCAAAACGATGGCATGGCATGGCCCTGGGTGTTGTTGTTGAGTATCTTTACACATCTGAGCTCATTTGATTATTCTTTTCTTGACTATTTATTGGATCATAAAGAGGTCTAGAGTGCAGTGGAATAGATTATACAGTTTGGGTGTAAGAATGGAATTGCGTCTTATTTTTCCATGTTTTGTAGTGTGATGTACATAATTTGAGCCGACGCTATCGTTGTGATGCTCTTACAGAATCAGTCATATCAGGCTGTTTAAGTTAAGAGGCTTTTGTATTTTTTAGTAGTACACCGGTTATGATTCATTTTGTTGGAAATTTCCTTGGGATCAGTATCTCAACCTATATGCTGTGGTGATTTTGTAGTTGTATACAGTCTACCATCTACAGAAATATCAATCACTTTTTCAAAATTTGTACCT

Fln Alignment:

Contig272___YHVGVQMIEIYNEQVRDLLATDGSNRRLEIRNNSQQNGLNVPDANLVSVTSTFDVINLMNIGQKNRVVGATALNDRSSRSHSVLTV----HVQGTDLTTGSILRGCLHLVDLAGSER-VDKSEATGDRLKEAQHINKSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKALMFAHISPETDAYNESLSTLKFAERV
D5ACB2_____________FRLWLSFFEIYGGKLYDLL---GDRRKLCMREDARQQ-VCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTV-GKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
907	84		15		0.999986
974	10	90			0.90298
976	10			90	0.90298
978			10	90	0.90298
1092			85	14	0.993533
1188		20		80	0.995493
1190		20		80	0.995493
1311		83		16	0.994512
1563			85	14	0.993533
1635	50		50		1.0
1863	85		14		0.993533
1945		14		85	0.993533
1971	87		12		0.992554
1982		12	87		0.992554
1983	87	12			0.992554
1985			87	12	0.992554
2247	80			20	0.995493
2361		25		75	0.996473
2362	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
396	410	GCCAT GCCAT GCCAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain