SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene251

Length: 2341 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene251
ATGGGGAACTTTGTTGGCGTCCGTCTCGTTTATTGGGTGGCTTTTCCTGTCGCAGAGGCTCGGCCTTGATAGACAGTCCTGACAAAATCTCAGTTCCCGAAAAAGACGGGAATGAATTTCTCCACGGTTTTCCCCTGAGTATATCTATATTTCAGATTTTTGCGGGGTGTTCGGCGACGGCATTGGCAACGCTATTAGGAGCCGAGCCGAACGAGTATTTCTATTGCGAATTTGGTGGTCCGAAAGTGGCTCGGCAAACATCGAGGGTTATCAAATCGTATCGGTCATTGTAGTTCTGCGACCCGGAATTATGCACTTGCCGGATGCGAAATTGAGGTTTTCTCACGGATATTCTACCGGGAGTTGAGGCGATCAGCAGAGAATGCCAGAGATCGATATGTTTTCCCTAGCTCCTATTTGACAAATAGTCATTCTTCGCGTCCTCTGTGGTCGAGAAACCCCAGAGACCTTGGCTATGGATTCATTAAGAAGGAAGCGAAAAGGAGCAGCAATAGATCTTGCCATTTTGGAACAGAGAGCTCGTCTATGTGATGATGGTGCATCTTCCACATCATTGGCCACACACCTTTCTTTCCAACAGCAGAGGAAGCGGAGGAAAGAAAAGATGAGGGACGAAGAATTGGGTTCCCGGCATCTGCATCCTACAGCAGCTGCTACTGCTCCTCCTCCAAGAAGGGGTTGTTTACCTAATTCACCAGGACGAGGGTTAAAGAGAAAGGTTGGCTGCATTGATCATGCTACTCGGACTGGCAGGAAGCGGAAGCTTGAAACTGATTATTCTTTAGGACTAGAATTGGGACGAGGCAAATTTGGTCTGGTAAGAATATGCACGAGCAAGGCTACTGGAGAAGAGCTGGCCTGCAAGACTCTGCCCAAAAAGACTGAAGAAAACGTGCATAAGGAAGTTGAGATTATGCAGCATCTTTCAGGCCATCCCAGTGTTGTCACACTCCAAGCTGTGTATGAAGATGCAGAATCTTTGCATCTTGTGATGGAATTATGCTCTGGTGGACGCCTGATCGATGAGATGTCTAGGAATGGATGCTACTCTGAGCACCAGGCTGCTAAATTGATCAAAGAATTAATAATGGTCATTAAGTACTGCCATGAGATGGGCGTCATCCATCGAGATATAAAGCCTGAGAATATTCTTCGAACTAGTACAGGACAACTGAAGCTAGCTGATTTTGGCTTGTCCATGCGGGTTGCAAAAGGACAAAACTTATCAGGTGTTGTGGGAAGCCCTGCGTATGTTGCTCCTGAAGTTTTGGCAGGGACCTATTCAGAAAAGGTTGATGTGTGGGCTGCTGGTGTCCTCCTGCATGCACTGTTGATAGGTGTATTACCATTTCGTGGGGAATCTGTTGAAGCCATATTTGAGGCAATAAAACAAGTCCAATTGGATTTTCATTCTGAAAAATGGCAGTCTATCTCAGGACTAGCAAAGGATTTGTTATCAAGGATGCTTTCCAGGGATGCTGGAAAGAGACTTTCTCCAGAAGAAGTTTTGAGCCACCCTTGGATCATGTTTTACACAGAATCTAATATAAAGGTGCGATCAAGCAGTTCAAAAAGGGAAAAACATACCTGTCCTGTCAAGGATGAATGGTCAGAATCCCTGCCTTCACTATCTCCACGTACAAGGGAGAGGAGAGCACAGTTCATAAATTCAATTCCGACAGAGCATGGAGAAGATGAATCTTTCTCTGGGTATTTGCTCTCACGTCCAAAGCAACCAGAGTATGATAGCCAAGCAGCAGGGAAATATGACCTTGTAGATGCTCTTGCATCTGCTATCTCCAGGATAAGATTATCGGAACCGAAAAGGAGCAGATTGTGTACCACTACATATCCTGTTCCACAGCAGTGTTCATCTAATCTAAAAAGCAGCTTGTGTACAGCATTTTGAAAAACATGCTGACTGTTACTGAACGGCAGTGCTCATTAATTACTGATTTTACGGCCCAAAATACTTTGACATTTCAAGAGTGACTGATAACACGAGTCATGCCATACACTGACTGAAGTAAGCATTGCGGCAGCTGCGTTTTGAAGATTAAAACTGATCTGAACATGAAATGACTCCATTGTTTGTGCCAGCCTAACTTGCAACCTACTATGGTGATCGGCAATTCTAATATCATTTTATGTACAGCTTCTAAAAGATTAGTTTGACTATCTGTATATATTGGGCTTCCCAATGAAGATGGAAAATGCAAGATATTAGAATTGCATTTTGTATAAAGCATAACAATATCTTCTATAACAATTTTTGGTGAAATACTGTTATTTCAATTTAAATCACTCTTGTTTGTCTTTT

Ace file of the UniGene sp_v2.0_unigene251 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase n=1 Tax=Triticum aestivum RepID=D2KHX1_WHEAT	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine threonine-protein kinase pepkr2	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV00

Fln msg:

Fln protein: MDSLRRKRKGAAIDLAILEQRARLCDDGASSTSLATHLSFQQQRKRRKEKMRDEELGSRHLHPTAAATAPPPRRGCLPNSPGRGLKRKVGCIDHATRTGRKRKLETDYSLGLELGRGKFGLVRICTSKATGEELACKTLPKKTEENVHKEVEIMQHLSGHPSVVTLQAVYEDAESLHLVMELCSGGRLIDEMSRNGCYSEHQAAKLIKELIMVIKYCHEMGVIHRDIKPENILRTSTGQLKLADFGLSMRVAKGQNLSGVVGSPAYVAPEVLAGTYSEKVDVWAAGVLLHALLIGVLPFRGESVEAIFEAIKQVQLDFHSEKWQSISGLAKDLLSRMLSRDAGKRLSPEEVLSHPWIMFYTESNIKVRSSSSKREKHTCPVKDEWSESLPSLSPRTRERRAQFINSIPTEHGEDESFSGYLLSRPKQPEYDSQAAGKYDLVDALASAISRIRLSEPKRSRLCTTTYPVPQQCSSNLKSSLCTAF*

Protein Length: 486

Fln nts: ATGGGGAACTTTGTTGGCGTCCGTCTCGTTTATTGGGTGGCTTTTCCTGTCGCAGAGGCTCGGCCTTGATAGACAGTCCTGACAAAATCTCAGTTCCCGAAAAAGACGGGAATGAATTTCTCCACGGTTTTCCCCTGAGTATATCTATATTTCAGATTTTTGCGGGGTGTTCGGCGACGGCATTGGCAACGCTATTAGGAGCCGAGCCGAACGAGTATTTCTATTGCGAATTTGGTGGTCCGAAAGTGGCTCGGCAAACATCGAGGGTTATCAAATCGTATCGGTCATTGTAGTTCTGCGACCCGGAATTATGCACTTGCCGGATGCGAAATTGAGGTTTTCTCACGGATATTCTACCGGGAGTTGAGGCGATCAGCAGAGAATGCCAGAGATCGATATGTTTTCCCTAGCTCCTATTTGACAAATAGTCATTCTTCGCGTCCTCTGTGGTCGAGAAACCCCAGAGACCTTGGCT_-_ATGGATTCATTAAGAAGGAAGCGAAAAGGAGCAGCAATAGATCTTGCCATTTTGGAACAGAGAGCTCGTCTATGTGATGATGGTGCATCTTCCACATCATTGGCCACACACCTTTCTTTCCAACAGCAGAGGAAGCGGAGGAAAGAAAAGATGAGGGACGAAGAATTGGGTTCCCGGCATCTGCATCCTACAGCAGCTGCTACTGCTCCTCCTCCAAGAAGGGGTTGTTTACCTAATTCACCAGGACGAGGGTTAAAGAGAAAGGTTGGCTGCATTGATCATGCTACTCGGACTGGCAGGAAGCGGAAGCTTGAAACTGATTATTCTTTAGGACTAGAATTGGGACGAGGCAAATTTGGTCTGGTAAGAATATGCACGAGCAAGGCTACTGGAGAAGAGCTGGCCTGCAAGACTCTGCCCAAAAAGACTGAAGAAAACGTGCATAAGGAAGTTGAGATTATGCAGCATCTTTCAGGCCATCCCAGTGTTGTCACACTCCAAGCTGTGTATGAAGATGCAGAATCTTTGCATCTTGTGATGGAATTATGCTCTGGTGGACGCCTGATCGATGAGATGTCTAGGAATGGATGCTACTCTGAGCACCAGGCTGCTAAATTGATCAAAGAATTAATAATGGTCATTAAGTACTGCCATGAGATGGGCGTCATCCATCGAGATATAAAGCCTGAGAATATTCTTCGAACTAGTACAGGACAACTGAAGCTAGCTGATTTTGGCTTGTCCATGCGGGTTGCAAAAGGACAAAACTTATCAGGTGTTGTGGGAAGCCCTGCGTATGTTGCTCCTGAAGTTTTGGCAGGGACCTATTCAGAAAAGGTTGATGTGTGGGCTGCTGGTGTCCTCCTGCATGCACTGTTGATAGGTGTATTACCATTTCGTGGGGAATCTGTTGAAGCCATATTTGAGGCAATAAAACAAGTCCAATTGGATTTTCATTCTGAAAAATGGCAGTCTATCTCAGGACTAGCAAAGGATTTGTTATCAAGGATGCTTTCCAGGGATGCTGGAAAGAGACTTTCTCCAGAAGAAGTTTTGAGCCACCCTTGGATCATGTTTTACACAGAATCTAATATAAAGGTGCGATCAAGCAGTTCAAAAAGGGAAAAACATACCTGTCCTGTCAAGGATGAATGGTCAGAATCCCTGCCTTCACTATCTCCACGTACAAGGGAGAGGAGAGCACAGTTCATAAATTCAATTCCGACAGAGCATGGAGAAGATGAATCTTTCTCTGGGTATTTGCTCTCACGTCCAAAGCAACCAGAGTATGATAGCCAAGCAGCAGGGAAATATGACCTTGTAGATGCTCTTGCATCTGCTATCTCCAGGATAAGATTATCGGAACCGAAAAGGAGCAGATTGTGTACCACTACATATCCTGTTCCACAGCAGTGTTCATCTAATCTAAAAAGCAGCTTGTGTACAGCATTTTGA___AAAACATGCTGACTGTTACTGAACGGCAGTGCTCATTAATTACTGATTTTACGGCCCAAAATACTTTGACATTTCAAGAGTGACTGATAACACGAGTCATGCCATACACTGACTGAAGTAAGCATTGCGGCAGCTGCGTTTTGAAGATTAAAACTGATCTGAACATGAAATGACTCCATTGTTTGTGCCAGCCTAACTTGCAACCTACTATGGTGATCGGCAATTCTAATATCATTTTATGTACAGCTTCTAAAAGATTAGTTTGACTATCTGTATATATTGGGCTTCCCAATGAAGATGGAAAATGCAAGATATTAGAATTGCATTTTGTATAAAGCATAACAATATCTTCTATAACAATTTTTGGTGAAATACTGTTATTTCAATTTAAATCACTCTTGTTTGTCTTTT

Fln Alignment:

Contig251___MDSLRRKRKGAAIDLAILEQRARLCDDGASSTSLATHLSFXXXXXXXXXXXXXXELGSRHLHXXXXXXXXXPRRGCLPNSPGRGLKRKVGCIDHATRTGRKRKLETDYSLGLELGRGKFGLVRICTSKATGEELACKTLPKKTEENVHKEVEIMQHLSGHPSVVTLQAVYEDAESLHLVMELCSGGRLIDEMSRNGCYSEHQAAKLIKELIMVIKYCHEMGVIHRDIKPENILRTSTGQLKLADFGLSMRVAKGQNLSGVVGSPAYVAPEVLAGTYSEKVDVWAAGVLLHALLIGVLPFRGESVEAIFEAIKQVQLDFHSEKWQSISGLAKDLLSRMLSRDAGKRLSPEEVLSHPWIMFYTESNIKVRSSSSKREKHTCPVKDEW-SESLPSLSPRTRERRAQFINSIPTEHGEDESFSGYLLSRPKQPEYDSQAAGKYDLVDALASAISRIRLSEPKRSRLCTTTYPVPQQCSSNLKSSLCTAF
A9NV00_____________MDSLRRKRKGAAVDLANLEQRARLCDDGASSTSLATHLSFQQQRKRRKEKMRDEELGSRHLHPTAAATAPPPRRGCLPNSPGRGLKRKVGCIDHATRTGRKRKLETDYYLGRELGQGKFGLVRICKSKATGEELACKTLPKKTVENVHKEVEIMQHLSGHPSVVTLQAVYEDAESLHLVMELCSGGRLFDEMSGNGCYSENQAAKLIKELIMVIKYCHEMGVIHRDIKPENILRTSTGQLKLADFGLSMRVTKGQTLSGVVGSPAYVAPEVLVGTYSEKVDVWAAGVLLHTLLIGVLPFRGESVEAIFESIKQVQLDFHSEKWQSISGLAKDLLSRMLSRDAGKRLSPEEVLSHPWVMFYTESNVKVRSSRSKRKKRTCPVKDEWLEESPPSLSLCTREIRAQFINPIPIEHGEDESFSGYLLPRPKQPEHDIQAAGKCDLVDALASAISRIRLSEPKRSRLCVTPYPVPQQCSSNLKSSLCTAF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1278	77	22			1.0
1660		20	80		0.995493
1665	20		80		0.995493
1666			20	80	0.995493
1667	80		20		0.995493
1668			80	20	0.995493
1672	20	80			0.995493
1673		20		80	0.995493
1830	75		25		0.996473
1841		20		80	0.995493
2121	80		20		0.995493
2229		66		33	0.997452
2285		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain