SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene242

Length: 3154 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene242
GTCCAAAGAAGCGTGTGATGTGTGGATCTTGATTGCTTGGCTTAATGGGAAGTATCGCCGAATACATTAAAGTACTTACAGTGAAAGAGACGATCTCTTTGTTTTTTGCGGCGAAATGGATGTGGGTTCACAATGAAGACGAGTGGTGGGATTCGCATGCAGAAGAAGGCCATGATTTTAATGTGACGGGTGATCTATAAATTGAAGTGACACCTTATCGATGAACGCCCATCGCTCTTGCTTGGGAATTTAACAAGCGCAGGAAATCAGATAAAGTCAGGGCGAAAGTGTTCCGATTCTGTTCATTAGATTCATGGAGAATTTTCTGCTTGTACTGTTTTGTATTGGGATTGGGGTGTTTTTTAACGGGGGGTCCTTAGTTCAATCCGCCGGATCCTTCCCCTGCGATCCCAGCACTGGACTCAACTCGTTTCCTTTCTGCAATACCTCGCTGCCCATTGGAGACAGAGTGAAGGATCTCGTTGGACGTCTTACTTTGCAGGAGAAAGTGCAGCAGTTGGTCGATCAGACCACCGCCATTCCCAGGCTTGGAATTCCTGTGTATCTATGGTGGTCTGAGGCTTTGCATGGCGTGTCCAATGTAGGTCATGGAACAAAGTTTGGAGGCTCAATTCCTGGGGCTACCAGTTTTCCACAAGTTATACTCACGGCTGCTTCCTTCAATACTTCTCTATGGAAAGAGATCGGCCAGGTGGTATCGACGGAGGCGCGGGCTATGTATAATGCCGGACAGGCGGGGTTGACGTTCTGGAGTCCCAACGTGAATATTTTCCGTGACCCTCGATGGGGAAGAGGACAGGAAACCCCCGGCGAGGACCCCCTTGTCGCCAGCCTGTATGCCACCAACTACGTCCAAGGTCTACAAGAAACCAACGGTGGTGACCCCAACCGTTTGAAAGTAGCTGCCTGCTGTAAGCATTACACGGCGTATGACGTGGACAACTGGAAGGGGTTTCAGCGGTACACGTTCGATGCCATCGTGTCGCAACAAGATCTGGAGGACACGTATGACGTTCCATTCAAAAGCTGTGTGTTGAATGGCAACGTGGCCAGCGTAATGTGCTCTTATAATAAGGTGAACGGCGTTCCTACCTGCGCTGACAAGAATCTGCTCGCGGGCACTATCAGAGGAAATTGGAGCTTGAACGGGTACATTGTCTCAGATTGTGACTCTGTTTCTGTATACTATAACCAACAGCACTATGGAGCAACTCCTGAAGACGCAGCTGCCTATGCTATAAACGCAGGATTGGATCTGGACTGCGGGAGCTTCCTTGCTCAGCACACAGAGGCAGCTGTGAATGAGAGCAAAGTGACAGAGTCTGCGGTTGATCAAGCCCTCATTAATACCTTCACAGTACTGATGCGCCTCGGCCGGTTCGACGGTGATCCGGCTCAGCAGCCATATGGGAACTTGGGACCGAATGACGTCTGCACTAATGACAATCAGCAGTTAGCTCTGGAAGCTGCCAGGGAAGGAATAGTACTGCTAAAGAATGATGGCTCACTGCCACTGGCTGCTAAGAATATCAGCTCCTTGGCTGTCATTGGCCCCAATGCAAATGTCACCAACACAATGATAGGAAACTATGCTGGCATCCCCTGTAAGTACACAACGCCCTTTCAAGGCCTTTCAGCTTACACTCAAACACTCTACGCCCCTGGGTGTGCAAATGTTGCCTGCATTGCAAACGATAGTTTAATTGCTGAGGCGGTCCAGACAGCCAGCAGTGCCGATGCAACAGTGTTAATAGTAGGTGGAGACTTGTCACTGGAGGCAGAGTCTTTAGACCGAACAAGTTTGTTGTTACCTGGGCAGCAACAGCAGCTGATAACCCAAGTTGCAGATGCATCCAAGGGACCTGTAATTCTTGTGATTATGTCAGGGGGTCCTTTTGATATTTCATTTGCTAAGAATAGTGACAAGATTTCAGGTATTCTCTGGGTGGGCTATCCGGGACAAGCTGGAGGAGCTGCCATTGCAGATGTTATATTTGGAGAATACAATCCAGGTGGTAGATTGCCTGTGACTTGGTATCCAGAGGAGTTTTCTATCAATGTTAACATGACCAACATGACCATGAGGGCGGATCCTGCCACAGGTTACCCTGGCAGGACTTACAGATTCTATACTGGACAAACTGTCTTTGAATTTGGAGATGGAATGAGCTACACAAGTTTTAACATCACTGTTGTCCATGCACCCGAACTCATCTCTGTTCCTCTGGATGAAAAATACACATGTACTCCCACACAATCAGAATCTTGTGAGACTGTCAGCTTGACCAACACTAAATGCGAGAACATGTCCCTGCAAGTTGATGTTGATGTGAATAACATTGGTAACAGAGATGGCAGCCATGTATTGTTTCTGTTCTCTACAGCTCCATCCAATAATGTCGATGCCCCCATTAAGCAACTGATTGATTTCAAAAAGGTCTATGTCGAAGCAGGTGCCACAGAAAGAGTCATTTTCACTCCTGATGTATGCAATGACCTCAGCATTGTTGAGCAGACTGGAACCAGGGTGTTGCCAGTGGGATCTCATCTTCTTCACATTGGTGATCTGGAACACTCTGTTTCTTTGCAGATAAGCAGCTGATTCCCACTAAAGTGAAATTTGGCTGTCTGCTTCCTCAAGGAGGAGGGCAGCTCTGCTAATGATTCCTTTTCCAAGTGAGAATAATTATTGATTGTGATTCTTGCTACAATTATTTTTTCATTGATTGTATTTCCTGCTACAAAATTGCATTAACAACCCCTGGCAGAAGCTATGTTAGATTCCTATAGTACCATGCTTTTCATGCAAGTTTGCTCATTTGCTGGGAGGCTTTGAATTTAAACAAATTAACCTCTCCAGAACTCAATATACTGTTTGTTTATTATTAGTTTGGTTCTCCAAAGGCAATTGTCAGGAGGCAGATTCAGGTTAGGTAGTAAACATTGACTTTTGAATGCATTATCACCGGAGAAAGGGACATTTCCTAGCACAAAGATCTAGGATTGTAACCTACATTATCAGTATGTGATAAATATCACAAAACATAAAGTTGTTTCCCATTTTTTCAAATAAAGCTTTGTTAATTGCAATTGAAATTACTTGGAAACCAAGGCAAAACTTCAATAAGACTAC

Ace file of the UniGene sp_v2.0_unigene242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	OSJNBb0079B02.3 protein n=3 Tax=Oryza sativa RepID=Q7X6F6_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	76%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	76%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	cell wall	GO:0005618	Cellular Component	76%
Blast2go	apoplast	GO:0048046	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 770 - 304

Fln protein: MENFLLVLFCIGIGVFFNGGSLVQSAGSFPCDPSTGLNSFPFCNTSLPIGDRVKDLVGRLTLQEKVQQLVDQTTAIPRLGIPVYLWWSEALHGVSNVGHGTKFGGSIPGATSFPQVILTAASFNTSLWKEIGQVVSTEARAMYNAGQAGLTFWSPNVNIFRDPRWGRGQETPGEDPLVASLYATNYVQGLQETNGGDPNRLKVAACCKHYTAYDVDNWKGFQRYTFDAIVSQQDLEDTYDVPFKSCVLNGNVASVMCSYNKVNGVPTCADKNLLAGTIRGNWSLNGYIVSDCDSVSVYYNQQHYGATPEDAAAYAINAGLDLDCGSFLAQHTEAAVNESKVTESAVDQALINTFTVLMRLGRFDGDPAQQPYGNLGPNDVCTNDNQQLALEAAREGIVLLKNDGSLPLAAKNISSLAVIGPNANVTNTMIGNYAGIPCKYTTPFQGLSAYTQTLYAPGCANVACIANDSLIAEAVQTASSADATVLIVGGDLSLEAESLDRTSLLLPGQQQQLITQVADASKGPVILVIMSGGPFDISFAKNSDKISGILWVGYPGQAGGAAIADVIFGEYNPGGRLPVTWYPEEFSINVNMTNMTMRADPATGYPGRTYRFYTGQTVFEFGDGMSYTSFNITVVHAPELISVPLDEKYTCTPTQSESCETVSLTNTKCENMSLQVDVDVNNIGNRDGSHVLFLFSTAPSNNVDAPIKQLIDFKKVYVEAGATERVIFTPDVCNDLSIVEQTGTRVLPVGSHLLHIGDLEHSVSLQISS*

Protein Length: 771

Fln nts: GTCCAAAGAAGCGTGTGATGTGTGGATCTTGATTGCTTGGCTTAATGGGAAGTATCGCCGAATACATTAAAGTACTTACAGTGAAAGAGACGATCTCTTTGTTTTTTGCGGCGAAATGGATGTGGGTTCACAATGAAGACGAGTGGTGGGATTCGCATGCAGAAGAAGGCCATGATTTTAATGTGACGGGTGATCTATAAATTGAAGTGACACCTTATCGATGAACGCCCATCGCTCTTGCTTGGGAATTTAACAAGCGCAGGAAATCAGATAAAGTCAGGGCGAAAGTGTTCCGATTCTGTTCATTAGATTC_-_ATGGAGAATTTTCTGCTTGTACTGTTTTGTATTGGGATTGGGGTGTTTTTTAACGGGGGGTCCTTAGTTCAATCCGCCGGATCCTTCCCCTGCGATCCCAGCACTGGACTCAACTCGTTTCCTTTCTGCAATACCTCGCTGCCCATTGGAGACAGAGTGAAGGATCTCGTTGGACGTCTTACTTTGCAGGAGAAAGTGCAGCAGTTGGTCGATCAGACCACCGCCATTCCCAGGCTTGGAATTCCTGTGTATCTATGGTGGTCTGAGGCTTTGCATGGCGTGTCCAATGTAGGTCATGGAACAAAGTTTGGAGGCTCAATTCCTGGGGCTACCAGTTTTCCACAAGTTATACTCACGGCTGCTTCCTTCAATACTTCTCTATGGAAAGAGATCGGCCAGGTGGTATCGACGGAGGCGCGGGCTATGTATAATGCCGGACAGGCGGGGTTGACGTTCTGGAGTCCCAACGTGAATATTTTCCGTGACCCTCGATGGGGAAGAGGACAGGAAACCCCCGGCGAGGACCCCCTTGTCGCCAGCCTGTATGCCACCAACTACGTCCAAGGTCTACAAGAAACCAACGGTGGTGACCCCAACCGTTTGAAAGTAGCTGCCTGCTGTAAGCATTACACGGCGTATGACGTGGACAACTGGAAGGGGTTTCAGCGGTACACGTTCGATGCCATCGTGTCGCAACAAGATCTGGAGGACACGTATGACGTTCCATTCAAAAGCTGTGTGTTGAATGGCAACGTGGCCAGCGTAATGTGCTCTTATAATAAGGTGAACGGCGTTCCTACCTGCGCTGACAAGAATCTGCTCGCGGGCACTATCAGAGGAAATTGGAGCTTGAACGGGTACATTGTCTCAGATTGTGACTCTGTTTCTGTATACTATAACCAACAGCACTATGGAGCAACTCCTGAAGACGCAGCTGCCTATGCTATAAACGCAGGATTGGATCTGGACTGCGGGAGCTTCCTTGCTCAGCACACAGAGGCAGCTGTGAATGAGAGCAAAGTGACAGAGTCTGCGGTTGATCAAGCCCTCATTAATACCTTCACAGTACTGATGCGCCTCGGCCGGTTCGACGGTGATCCGGCTCAGCAGCCATATGGGAACTTGGGACCGAATGACGTCTGCACTAATGACAATCAGCAGTTAGCTCTGGAAGCTGCCAGGGAAGGAATAGTACTGCTAAAGAATGATGGCTCACTGCCACTGGCTGCTAAGAATATCAGCTCCTTGGCTGTCATTGGCCCCAATGCAAATGTCACCAACACAATGATAGGAAACTATGCTGGCATCCCCTGTAAGTACACAACGCCCTTTCAAGGCCTTTCAGCTTACACTCAAACACTCTACGCCCCTGGGTGTGCAAATGTTGCCTGCATTGCAAACGATAGTTTAATTGCTGAGGCGGTCCAGACAGCCAGCAGTGCCGATGCAACAGTGTTAATAGTAGGTGGAGACTTGTCACTGGAGGCAGAGTCTTTAGACCGAACAAGTTTGTTGTTACCTGGGCAGCAACAGCAGCTGATAACCCAAGTTGCAGATGCATCCAAGGGACCTGTAATTCTTGTGATTATGTCAGGGGGTCCTTTTGATATTTCATTTGCTAAGAATAGTGACAAGATTTCAGGTATTCTCTGGGTGGGCTATCCGGGACAAGCTGGAGGAGCTGCCATTGCAGATGTTATATTTGGAGAATACAATCCAGGTGGTAGATTGCCTGTGACTTGGTATCCAGAGGAGTTTTCTATCAATGTTAACATGACCAACATGACCATGAGGGCGGATCCTGCCACAGGTTACCCTGGCAGGACTTACAGATTCTATACTGGACAAACTGTCTTTGAATTTGGAGATGGAATGAGCTACACAAGTTTTAACATCACTGTTGTCCATGCACCCGAACTCATCTCTGTTCCTCTGGATGAAAAATACACATGTACTCCCACACAATCAGAATCTTGTGAGACTGTCAGCTTGACCAACACTAAATGCGAGAACATGTCCCTGCAAGTTGATGTTGATGTGAATAACATTGGTAACAGAGATGGCAGCCATGTATTGTTTCTGTTCTCTACAGCTCCATCCAATAATGTCGATGCCCCCATTAAGCAACTGATTGATTTCAAAAAGGTCTATGTCGAAGCAGGTGCCACAGAAAGAGTCATTTTCACTCCTGATGTATGCAATGACCTCAGCATTGTTGAGCAGACTGGAACCAGGGTGTTGCCAGTGGGATCTCATCTTCTTCACATTGGTGATCTGGAACACTCTGTTTCTTTGCAGATAAGCAGCTGA___TTCCCACTAAAGTGAAATTTGGCTGTCTGCTTCCTCAAGGAGGAGGGCAGCTCTGCTAATGATTCCTTTTCCAAGTGAGAATAATTATTGATTGTGATTCTTGCTACAATTATTTTTTCATTGATTGTATTTCCTGCTACAAAATTGCATTAACAACCCCTGGCAGAAGCTATGTTAGATTCCTATAGTACCATGCTTTTCATGCAAGTTTGCTCATTTGCTGGGAGGCTTTGAATTTAAACAAATTAACCTCTCCAGAACTCAATATACTGTTTGTTTATTATTAGTTTGGTTCTCCAAAGGCAATTGTCAGGAGGCAGATTCAGGTTAGGTAGTAAACATTGACTTTTGAATGCATTATCACCGGAGAAAGGGACATTTCCTAGCACAAAGATCTAGGATTGTAACCTACATTATCAGTATGTGATAAATATCACAAAACATAAAGTTGTTTCCCATTTTTTCAAATAAAGCTTTGTTAATTGCAATTGAAATTACTTGGAAACCAAGGCAAAACTTCAATAAGACTAC

Fln Alignment:

Contig242___LIAEAVQTASSADATVLIVGGDLSLEAESLDRTSLLLPGQQQQLITQVADASKGPVILVIMSGGPFDISFAKNSDKISGILWVGYPGQAGGAAIADVIFGEYNPGGRLPVTWYPEEFSINVNMTNMTMRADPATGYPGRTYRFYTGQTVFEFGDGMSYT--SFNITVVHAPELISVPLDEKYTCTPTQSESCETVSLTNTKCENMSLQVDVDVNNIGNRDGSHVLFLFSTAPSNNVDAPIKQLIDFKKVYVEAGATERVIFTPDVCNDLSIVEQTGTRVLPVGSHLLHIGDLEHSVSL
D5ABI5_____________MFGEAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFEALGNRGKG--HVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
671	14		85		0.993533
808	30		70		1.0
1304	11		88		0.923564
1970		20	80		0.999996
2012			25	75	1.0
2102		84		15	0.999986
2331	11			88	0.923564
2333	11	88			0.923564
2334		88		11	0.923564
2336		12	87		0.992554
2462	16	83			0.994512
2695		87		12	0.992554
2747	12		87		0.992554
2840	87			12	0.992554
2856		25		75	1.0
2874	14	85			0.993533
2893	66	33			1.0
2983			50	50	1.0
2984	83		16		0.994512
2988		50	50		1.0
3065	83		16		0.994512
3068	16			83	0.994512
3069	83		16		0.994512
3071	83	16			0.994512
3072	16		83		0.994512
3088		25		75	0.996473
3100	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain