SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene234

Length: 1290 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene234 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM43_MARPO	-	-	74%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	43%
Blast2go	probably inactive leucine-rich repeat receptor-like protein kinase at3g28040-like	-	-	83%

Source	ECs	Term	Type	Identity
Blast2go	[Tau protein] kinase.	EC:2.7.11.26	-	83%
Blast2go	[G-protein-coupled receptor] kinase.	EC:2.7.11.16	-	83%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	83%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	tau-protein kinase activity	GO:0050321	Molecular Function	83%
Blast2go	receptor activity	GO:0004872	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	G-protein coupled receptor kinase activity	GO:0004703	Molecular Function	83%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 37 aas, putative chimeric sequence, your sequence is shorter than subject: 241 - 626

Fln protein: IQLLRRIKHPNLVNLQGYYWTPQLQLLIYDYIQSGSLYSRLHERSQTDPPLSWSSRFNIALGTARGLAHLHHSCRPPVIHYNIKSSNILLDENCNPKVADYGLAKLLPMLDRYILSSKIQSALGYMAPEFACQSLKINERCDVYGFGVLLLELVTGRRPVEYMEDDVVILCDNVRSLLDEGKALTCVDSSLSEYPEDEVIPVIKLGLICTSQVPSNRPSMSEVVHILELIRSPMESRETP*

Protein Length: 242

Fln nts: GATACAGCTATTGCGCAGAATCAAGCATCCAAATCTAGTGAATTTGCAAGGCTACTACTGGACACCACAATTACAGCTTCTTATATATGACTACATTCAAAGTGGAAGTTTGTATAGTCGACTTCATGAAAGATCCCAAACAGATCCCCCGTTAAGTTGGTCAAGCAGGTTTAATATTGCTTTGGGGACTGCAAGAGGGCTTGCACATCTTCACCATTCTTGCAGACCGCCAGTCATACACTACAACATAAAATCCAGCAATATTTTGCTGGATGAGAATTGCAACCCTAAAGTTGCAGATTATGGCCTTGCAAAGCTGCTTCCCATGCTTGATAGATACATTCTTAGTAGCAAAATACAGAGTGCATTAGGATATATGGCACCCGAATTTGCCTGTCAGAGCCTTAAGATTAATGAAAGATGTGATGTCTATGGATTTGGCGTGTTGCTGTTAGAACTTGTTACAGGCAGAAGGCCAGTTGAATACATGGAGGATGATGTTGTGATCTTATGTGACAATGTGCGGTCATTGCTAGATGAAGGGAAGGCACTGACTTGTGTGGATTCGAGTTTATCTGAATACCCAGAGGATGAGGTTATTCCTGTGATCAAGCTAGGATTGATTTGCACTTCACAAGTACCTTCAAACAGGCCATCCATGTCAGAGGTGGTACACATACTGGAGCTCATTAGATCACCGATGGAAAGTAGAGAGACTCCTTGA___AGGGGAGTCGAAGCTTTCCTTCAAAATAAAGTTTTCTCAAATTATGCTATAGGGGAATGTGAGCGACACTGTTGAAGAGGAGTTCAGTTATTCAACCCTCAATCTGAAAGCGTCCTGACATGAGTTTTGAATCTTTTTGCTTTACTGAACTTTTGTTTATGCTTGCAGCCTTCAAAAGACTTGGGAACCAATTTTAAAACTCGATTGAGGGAGAAAGTCCTTTTCACCAGTGCCAACTTCCATTCTTCTTCTCTGGGAAACCTTGAGATAAATTCCCTGCATTTATTTGATTATTATCATTGGCAGGTTCTACCATTGTGCCAGATGATATGATATCATATATAAATTTTCATTGAATGTTTCCAATAGAATCCTGTTATAAACAGAGGGCTTTTTTTAGAATTCTGTTTATAACTGTGTCTGTTGGAATATATAGCATCTTTTTCTCTGTTTTGTTTTTACCCTGTGGTAAAATGGTATAGTGAGGACTACATTTCCATGTAAGAACAGACTATTATTACAGGTATTCTCAATATCAAGATTCGGCATGCCACGCTAGTTTTTTT

Fln Alignment:

Contig234___IQLLRRIKHPNLVNLQGYYWTPQLQLLIYDYIQSGSLYSRLHERSQTDPPLSWSSRFNIALGTARGLAHLHHSCRPPVIHYNIKSSNILLDENCNPKVADYGLAKLLPMLDRYILSSKIQSALGYMAPEFACQSLKINERCDVYGFGVLLLELVTGRRPVE---YMEDDVVILCDNVRSLLDEGKALTCVDSSL-SEYPEDEVIPVIKLGLICTSQVPSNRPSMSEVVHILE
D5FY57_____________VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHV-TTAVRGTIGHIAPEYLSTG-KSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLIDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1010	12		87		0.992554
1021		87		12	0.992554
1207	88			11	0.923564
1213			87	12	0.992554
1214	87			12	0.992554
1231	14			85	0.993533
1235			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain