SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene216

Length: 3928 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene216
ATGGGGGGCACGTCAAGCCCTTATTGGATCCACCACTTTTAAAGGCGATCAAGGTAGGCAAGGCGGGGTGGGCACCCTGACATCACAGGAAGGTTTGGATCTTACAGTATGTAATTATTTTTGCACCGTCCACGGGGTTCCGGCCCGACCTTCTCGTTCTCAGTCGCCCTCACAATAAAATTCCCTTTCAAAACTCAAAATTCAGCACAGGAACCGGGAGAAAAGAAGCATGGACATGATTTGAGGGAGGGGGTTTATAAGTTGAATATAGAGAGAGCAGAGCAAAAGGGGAAGCGGGTGCGGGCACTGGCGCTGCCGCTGACATTGGATCTGGAAGACAATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTATCCCCTGGTTGTTGTGGATGTTGTAGAAGAAGATGGTACTGTTGATGCAACCAAACCCAACCCCAATGGCGTCGAGTTTGACAATCTTTATCTGGATATGAATGGAATTATTCATCCATGCTTTCATCCAGAAGACAGGCCTGCTCCATCAACATATGATGAAATTTTTAAGAACATGTTTGATTACATAGACCGCCTATTTTTAATAGTGAGGCCAAGGAAGCTTTTGTACATGGCAATTGATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGCGCTGCAAAAGATGCAGCTGAAGCAAGTGCAGAAGAAGAAAGATTGAGAAAAGAGTTTGAGGCAGAAGGTAAAGTTATGGCCTTAAAAGAGAAATCAGAAGTCCATGACTCAAATGTCATTACCCCTGGGACAGAATTTATGGCCACACTGTCTGTAGCTATGCAGTACTATGTACATTTAAGATTAAACAATGACCCGGGATGGCAGAAAATAAAGGTTATACTGTCTGATGCAAATGTTCCTGGTGAGGGGGAACACAAAGTCATGTCCTATATACGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACGCGTCACTGCTTGTATGGATTAGATGCAGATTTAATTATGCTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCGTCGCTTTCCCTGGTCAGCAAGAAAAATGCTACCTTTGTGGTCAGGTTGGTCATTTGGCAGCTGATTGTGAAGGAAATCCAGCAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTTCCTAAAAAACCCTATCAGTTTCTCAACATCTGGACCTTGCGAGAGTACTTGGAGTATGACATGAAGATACCAAATCCTCCATTTAAGGTGGACTTTGAACGGCTTGTGGATGATTTTGTCTTTATTTGCTTTTTTGTGGGGAATGATTTCCTTCCGCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGCGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGCATATAGACTCAAATTGAAGAACTTAAATATTTCAGATTCTGATCCTCAACTAGGTGATAAGGCAATGGAAAATGTGGATTCACAGAGACTCAAAATTAAGAACTTAAATAGTTCAGATTCTGTAGGACCGCTGGGTGAGAAGGCACTGGATATATCAAGACTTAAAATGAAAAATGTAAAAAGTTCAGATTCCTATCAGCCTCAGGGTGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATATTATACTGAAAAGTTTGGAGCACAAACACCGGAGGCCATTGAAGATGTCAAAAGAGATGTTGTCTTGAAGTATACAGAAGGTCTTGTGTGGGTTATGCGCTACTATTACCAAGGAGTGTGCTCATGGCTATGGTTTTATCCATACCATTTTGCTCCATTTGCATCTGATCTGAAAGGTCTGAATGAGTTGGAGATTACCTTTTTTCCTGGGAAACCTTTCAAACCGTTTGATCAGCTAATGGGTACTCTTCCAGCTGCAAGTGCAAATGCTCTTCCTGAACATTATAGGTCCTTGATGATTGATCCAAACTCACCTATTATTGATTTTTATCCTACTGATTTTGAGATAGACATGAATGGTAAACGCTTTGCCTGGCAGGGTGTTGCTAAATTGCCATTTATTGATGAAGCTCGCCTTCTTGCAGAGACTAAGAAGGTTGAAGGCACTTTAACGAAGGAAGAAATGCGTCGAAATAGTTTTAAATTGGACTTGCTTTTTGTGTGCATGAGTCACACACTGGCGTCATATATAATCCTTCTCCATCAACGCTGTGATTGCATTTCACAGCAGGAGAGAGCCAATATCAAAGAAGAAATCAACACAATTGCAAGTGATGGAATGAATGGGTTTTTATGCCCTTGTGAAGGAGATTTTTTTCCACCAAAACTCCCTTCACCCATCAAAGGAATGGAAGACATTGAAAGCAATCAAGTACTGCATGTAAATTATGCGAACCCACCTACACATAGACACATTCCAAGACCACCCGAGGAAGTAATTATGCCAAAAAAGAGTATAAGTGAACAAGATATAAAACCAACACCAACATTATGGCATGAGGATAATGGCCGTAGGCAACAGGTTAAAGAAAGGCCACCTGTTCCTGGGGCTATTTCAGGCCCTCATCTTGGAGAGGCAGCACACCGTCTCTTGACCAATAGTCTACAGTTAAAGAGTAACAACTCAAGAGATCTGCAGCCCGGGCAGCTATTGGTATCACAAACACTTAGTAGCACTGCTGGTATACTTCCAGTGTCCTCTGTCTACCAAGGCACTACAAGTTCCAAGCCAAGGCCAGCTGGACCTCCTGGTTATGAACGAGGGTTTGCTTCATATGGAACCCAACCAAGGCCAACTGGTCCTCCAGGCTATGACCTTTCATTTGCCTCTTATGGGTTTCAAAATTCTCATAATTGCACATATAACAATGTTCAGACTAATGATCAAGATTGCATTGCCCCTGCCTTGGCACCCTTTCCTGCTTACCTGGGAATGCAAGACCAGACACAACCTACTATGCCTATCAATGGATATTACTCTTCCCAGATCAATTATCAAGGCATGACAAATGGTGATTCAGGTTTCCCAGTTCAAGGTGTGCAACCGGTTAATCGACAACAATATGGCATGTATCAGGGTGGTCGTGGTCCTGGAAATTCATATCAAAATTCTCAGCCAAATCAGCTTCCAATGCCACCACCAACATGGGTTGCTGGGGGAGGAACGAATAACCCACAGCTCTATTTGAGGCCTCAAGATGTGATGCCCAACAGAGGTTCAGTTTTGTATAATGATGGAAACAGCCTCCATCAATATAGGGGAAGAGCTCCTTCCCGAAGGCCTACTGGTTCTGGTCGCTAGTAGTTTCAAACACAATCCAGGCACCAAAAATCAAATTTATGTTGTATTTTGTGCCCCTTAAAGATCTGCTATAAAATCTTGGGAGGGACTGCATGATTTGTACAACAAGAAACAATTCTGTATATTAAGAAATCACTGACCATCTTTTGTTCTCTCACGGGCTTCAATTTGTAGATTCTGACATTGAATAGTTGTATCCATACAAATTTCAGCACTATTATGATTGGGTGAAAAAGTATACTGCTGCCAGAGTGTACTATAAATCATTCAGATTATTTGTCCAATTGGAACCCTTAGCAGAATGGCAGGCTTTGTTGTTCTAACGTCTAATGGCATATGGCATAGAGATAATGGCATATGGCATAGAGATATGTAGTGCACAGGTGCGTTTCATATAATCTTTTTCTGAACTTTAAAGCGAGTGTAAATATTCCTTCAGTGTGAGAAATAGTATAACTACCATAATTTAGT

Ace file of the UniGene sp_v2.0_unigene216 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exoribonuclease 2 n=2 Tax=Arabidopsis thaliana RepID=XRN2_ARATH	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE57

Fln msg: your sequence is longer than subject: 1039 - 117

Fln protein: MGVPAFYRWLSDRYPLVVVDVVEEDGTVDATKPNPNGVEFDNLYLDMNGIIHPCFHPEDRPAPSTYDEIFKNMFDYIDRLFLIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAAEASAEEERLRKEFEAEGKVMALKEKSEVHDSNVITPGTEFMATLSVAMQYYVHLRLNNDPGWQKIKVILSDANVPGEGEHKVMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLALATHEIHFSILREVVAFPGQQEKCYLCGQVGHLAADCEGNPAELDEEGNEQSPVPKKPYQFLNIWTLREYLEYDMKIPNPPFKVDFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLLMVVYKKEFGEMGGYLTDAGEVNLTRVEHFIQSVAFYEERIFQKRARLKQAQENADAYRLKLKNLNISDSDPQLGDKAMENVDSQRLKIKNLNSSDSVGPLGEKALDISRLKMKNVKSSDSYQPQGDKVKLGESGWKERYYTEKFGAQTPEAIEDVKRDVVLKYTEGLVWVMRYYYQGVCSWLWFYPYHFAPFASDLKGLNELEITFFPGKPFKPFDQLMGTLPAASANALPEHYRSLMIDPNSPIIDFYPTDFEIDMNGKRFAWQGVAKLPFIDEARLLAETKKVEGTLTKEEMRRNSFKLDLLFVCMSHTLASYIILLHQRCDCISQQERANIKEEINTIASDGMNGFLCPCEGDFFPPKLPSPIKGMEDIESNQVLHVNYANPPTHRHIPRPPEEVIMPKKSISEQDIKPTPTLWHEDNGRRQQVKERPPVPGAISGPHLGEAAHRLLTNSLQLKSNNSRDLQPGQLLVSQTLSSTAGILPVSSVYQGTTSSKPRPAGPPGYERGFASYGTQPRPTGPPGYDLSFASYGFQNSHNCTYNNVQTNDQDCIAPALAPFPAYLGMQDQTQPTMPINGYYSSQINYQGMTNGDSGFPVQGVQPVNRQQYGMYQGGRGPGNSYQNSQPNQLPMPPPTWVAGGGTNNPQLYLRPQDVMPNRGSVLYNDGNSLHQYRGRAPSRRPTGSGR*

Protein Length: 1040

Fln nts: ATGGGGGGCACGTCAAGCCCTTATTGGATCCACCACTTTTAAAGGCGATCAAGGTAGGCAAGGCGGGGTGGGCACCCTGACATCACAGGAAGGTTTGGATCTTACAGTATGTAATTATTTTTGCACCGTCCACGGGGTTCCGGCCCGACCTTCTCGTTCTCAGTCGCCCTCACAATAAAATTCCCTTTCAAAACTCAAAATTCAGCACAGGAACCGGGAGAAAAGAAGCATGGACATGATTTGAGGGAGGGGGTTTATAAGTTGAATATAGAGAGAGCAGAGCAAAAGGGGAAGCGGGTGCGGGCACTGGCGCTGCCGCTGACATTGGATCTGGAAGACA_-_ATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTATCCCCTGGTTGTTGTGGATGTTGTAGAAGAAGATGGTACTGTTGATGCAACCAAACCCAACCCCAATGGCGTCGAGTTTGACAATCTTTATCTGGATATGAATGGAATTATTCATCCATGCTTTCATCCAGAAGACAGGCCTGCTCCATCAACATATGATGAAATTTTTAAGAACATGTTTGATTACATAGACCGCCTATTTTTAATAGTGAGGCCAAGGAAGCTTTTGTACATGGCAATTGATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGCGCTGCAAAAGATGCAGCTGAAGCAAGTGCAGAAGAAGAAAGATTGAGAAAAGAGTTTGAGGCAGAAGGTAAAGTTATGGCCTTAAAAGAGAAATCAGAAGTCCATGACTCAAATGTCATTACCCCTGGGACAGAATTTATGGCCACACTGTCTGTAGCTATGCAGTACTATGTACATTTAAGATTAAACAATGACCCGGGATGGCAGAAAATAAAGGTTATACTGTCTGATGCAAATGTTCCTGGTGAGGGGGAACACAAAGTCATGTCCTATATACGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACGCGTCACTGCTTGTATGGATTAGATGCAGATTTAATTATGCTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCGTCGCTTTCCCTGGTCAGCAAGAAAAATGCTACCTTTGTGGTCAGGTTGGTCATTTGGCAGCTGATTGTGAAGGAAATCCAGCAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTTCCTAAAAAACCCTATCAGTTTCTCAACATCTGGACCTTGCGAGAGTACTTGGAGTATGACATGAAGATACCAAATCCTCCATTTAAGGTGGACTTTGAACGGCTTGTGGATGATTTTGTCTTTATTTGCTTTTTTGTGGGGAATGATTTCCTTCCGCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGCGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGCATATAGACTCAAATTGAAGAACTTAAATATTTCAGATTCTGATCCTCAACTAGGTGATAAGGCAATGGAAAATGTGGATTCACAGAGACTCAAAATTAAGAACTTAAATAGTTCAGATTCTGTAGGACCGCTGGGTGAGAAGGCACTGGATATATCAAGACTTAAAATGAAAAATGTAAAAAGTTCAGATTCCTATCAGCCTCAGGGTGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATATTATACTGAAAAGTTTGGAGCACAAACACCGGAGGCCATTGAAGATGTCAAAAGAGATGTTGTCTTGAAGTATACAGAAGGTCTTGTGTGGGTTATGCGCTACTATTACCAAGGAGTGTGCTCATGGCTATGGTTTTATCCATACCATTTTGCTCCATTTGCATCTGATCTGAAAGGTCTGAATGAGTTGGAGATTACCTTTTTTCCTGGGAAACCTTTCAAACCGTTTGATCAGCTAATGGGTACTCTTCCAGCTGCAAGTGCAAATGCTCTTCCTGAACATTATAGGTCCTTGATGATTGATCCAAACTCACCTATTATTGATTTTTATCCTACTGATTTTGAGATAGACATGAATGGTAAACGCTTTGCCTGGCAGGGTGTTGCTAAATTGCCATTTATTGATGAAGCTCGCCTTCTTGCAGAGACTAAGAAGGTTGAAGGCACTTTAACGAAGGAAGAAATGCGTCGAAATAGTTTTAAATTGGACTTGCTTTTTGTGTGCATGAGTCACACACTGGCGTCATATATAATCCTTCTCCATCAACGCTGTGATTGCATTTCACAGCAGGAGAGAGCCAATATCAAAGAAGAAATCAACACAATTGCAAGTGATGGAATGAATGGGTTTTTATGCCCTTGTGAAGGAGATTTTTTTCCACCAAAACTCCCTTCACCCATCAAAGGAATGGAAGACATTGAAAGCAATCAAGTACTGCATGTAAATTATGCGAACCCACCTACACATAGACACATTCCAAGACCACCCGAGGAAGTAATTATGCCAAAAAAGAGTATAAGTGAACAAGATATAAAACCAACACCAACATTATGGCATGAGGATAATGGCCGTAGGCAACAGGTTAAAGAAAGGCCACCTGTTCCTGGGGCTATTTCAGGCCCTCATCTTGGAGAGGCAGCACACCGTCTCTTGACCAATAGTCTACAGTTAAAGAGTAACAACTCAAGAGATCTGCAGCCCGGGCAGCTATTGGTATCACAAACACTTAGTAGCACTGCTGGTATACTTCCAGTGTCCTCTGTCTACCAAGGCACTACAAGTTCCAAGCCAAGGCCAGCTGGACCTCCTGGTTATGAACGAGGGTTTGCTTCATATGGAACCCAACCAAGGCCAACTGGTCCTCCAGGCTATGACCTTTCATTTGCCTCTTATGGGTTTCAAAATTCTCATAATTGCACATATAACAATGTTCAGACTAATGATCAAGATTGCATTGCCCCTGCCTTGGCACCCTTTCCTGCTTACCTGGGAATGCAAGACCAGACACAACCTACTATGCCTATCAATGGATATTACTCTTCCCAGATCAATTATCAAGGCATGACAAATGGTGATTCAGGTTTCCCAGTTCAAGGTGTGCAACCGGTTAATCGACAACAATATGGCATGTATCAGGGTGGTCGTGGTCCTGGAAATTCATATCAAAATTCTCAGCCAAATCAGCTTCCAATGCCACCACCAACATGGGTTGCTGGGGGAGGAACGAATAACCCACAGCTCTATTTGAGGCCTCAAGATGTGATGCCCAACAGAGGTTCAGTTTTGTATAATGATGGAAACAGCCTCCATCAATATAGGGGAAGAGCTCCTTCCCGAAGGCCTACTGGTTCTGGTCGCTAG___TAGTTTCAAACACAATCCAGGCACCAAAAATCAAATTTATGTTGTATTTTGTGCCCCTTAAAGATCTGCTATAAAATCTTGGGAGGGACTGCATGATTTGTACAACAAGAAACAATTCTGTATATTAAGAAATCACTGACCATCTTTTGTTCTCTCACGGGCTTCAATTTGTAGATTCTGACATTGAATAGTTGTATCCATACAAATTTCAGCACTATTATGATTGGGTGAAAAAGTATACTGCTGCCAGAGTGTACTATAAATCATTCAGATTATTTGTCCAATTGGAACCCTTAGCAGAATGGCAGGCTTTGTTGTTCTAACGTCTAATGGCATATGGCATAGAGATAATGGCATATGGCATAGAGATATGTAGTGCACAGGTGCGTTTCATATAATCTTTTTCTGAACTTTAAAGCGAGTGTAAATATTCCTTCAGTGTGAGAAATAGTATAACTACCATAATTTAGT

Fln Alignment:

Contig216___MPINGYYSSQINYQGMTNGDSGF---PVQGVQPVNXXXXXXXXXXXXXGNSYQNSQPNQLPMPPPTWVAGGGTNNPQLYLRPQDVMPNRGSVLYNDGNSLHQYRGRAPSRRPTGSGR
D5AE57_____________MPINGYYTSQINCQGMTNGDSGFLVQGVQGVQGVNRQQYGMYQGNRGPGNLYQNSQPNQLPMPPPTWVGGGGISNTQIYLRPQDVMPNRGSALYNDGNSLHQVRGRAPPRRPTGSGR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
3798	10		90		0.90298
3823	88			11	0.923564
3824		88	11		0.923564
3825	11			88	0.923564
3828	88		11		0.923564
3830		11	88		0.923564
3832			11	88	0.923564
3837	88		11		0.923564
3838		88	11		0.923564
3841		11		88	0.923564
3842	11	88			0.923564
3844			11	88	0.923564
3845	25		75		1.0
3846		12		87	0.992554
3862	80			20	0.995493
3863		80	20		0.995493
3864	20	80			0.995493
3865		80	20		0.995493
3866		60		40	1.0
3868	20	80			0.995493
3869	20	80			0.995493
3870	20			80	0.995493
3875	25			75	0.996473
3877		75	25		0.996473
3878		75	25		0.996473
3880		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain