SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene213

Length: 3362 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene213
CGTCGTGACCTTGGCTGTCACTCAATTATGTACTTCCTTCTATGGTTATACTATTGGGACCAAGCCCAAACACACTCAATTAGATGACGCTATTTTGCCTGCGTACTTAGCACCGAAAGATTATTAAAGCAGCGCCCATTGTCTTTATGATTATTCTTCCGCCATTCGTCACGCTGTAATCGTTTGATATTCTCTTCGTCACGCTGCTCGGCTCAGCGTTCTGCAAAGCGAATCAGAGCAATGGGGGCGGATTTTGAGCCATATCGTCTACGATGTGAGCTCCGAGGTCACGAAGAAGACGTTCGTGGAATATGCATCTGTGGGGACAGTGGCATTGCCACAGGTTCAAGAGACAAGACTGTACGTTTTTGGTGTGTTGATGAAACAGAAAAAAGCAGATACACATTGTCAAAAACAATGGTGGGGCACAAAAGCTTTGTGGGACCTTTGGCCTGGATACCTGCTAATGAACGGTTTCCTGAAGGAGGGATCGTGTCAGGAGGAATGGATACTCTTGTCTTTGTATGGGATTTGAGCACAGGACAAGCAGTCCAGACCATGAAGGGCCATCAATTACAGGTCACAGGTGTTACTTTGGATGACCAGGGTGACATTCTATCTTCATCAATTGACTGCACTGTGAGGAGGTGGAGGAATGGGGATACTGTTGAATCCTGGCCGGCTCATCAAGCACCCATTCAGGCAATCTTGAAGTTACCTTCTGGAGAAGTTGCTACAGGCTCAACTGATACCACTGTGAAGCTCTGGAGCGGTTCAAAATGTCTTCATACTTTTATAGGACACACAGATACGGTTCGTGGATTGGGACTGATGCCAAATGTAGGAATTCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGGATAAAATTGGTGAAGTAGTGGATGGGCCTGACGATTTACAAGGGCGTAAAAAACTTGATGGTGTTGCATATGACTATGTATTTGATGTGGATATTGAAGATGGTGAACCCATTAGGAAGCTGCCATACAACCGTGGAGATAATCCCTACTTTGTTGCAGAACAATGGCTTTTGAAAGAAGGGCTTCCACTAACATATAGGGAACAGATTGTACAATTTATTTTGCAAAATACAGGGCAGGCAAATGTTCCATTGGACAATTCATTTGTTGATCCTTATACTGGTGCAAATGCTTATATGCCTGGACAGCCATCTTCATTTACGTCAGGTAGTCCCCCTGAAAAATATAACTTCAAGTATATTCCAAAGAGGGGAATGCTTTATTTTGACACAGCACAGTTTGATGGTATTCTTCGAAAGATTTCAGAATTCAATAATGCAATGACATCAGATGAGGGACAGCGACCACTTTCACTAAACGATGCAGAATCAATGCGACTTAATGCCATTGTGGCAATATTAAAAGACACTTCTCATTATCACACTAGTGCTTTTGCTGACACTGATATGAATATTTTAATCAAGATGCTTACTTCCTGGCCCGTTCAAATGTTATTTCCAGTGTTTGACATTGTGAAAATGATGATTTATCATCCGCATGGGGCAAACCTATTTGTCAACTGTCTGCAGAGTGGAAATGATTTTCTTATGGACGCTTTTAGGAGGGCTACAACTGCACCTGCTTTGGCTGCAAATCAGTTAACAAGTATTCGGGCAGTTGTAAATGCCTTTAGGCATGCATGTTTTAAAACATGGCTGGTTCATCATCGCAGTGAGATTCTTGACCTTTTTTCGGAGTGTTGTTCATCCTCAAACAAGAATATTCGGCTGTCATACTCTACCTTGATTCTGAACTATACAGTGTTACTAATTGATTCAAAAGATGAAGATGGTCAACAGCAAGTTCTTTCAGCTGCTATGGAGCTGGGAGATGCACAAGAACATGAAGTGGATGTAAGGTTCAGGGCACTTGTGGCAATTGGAACTCTTATGCTTGATGGACTGGTAAAACATCAAGCAATTCAATTGGATGCCAAAAGCATTGCTGAATCTGCAAAAAGTTCAAAGGAAGCCAAGATTGCAGAAGTTGGAGCAGATATTGAGCATCTGATCAAATCAGTGTGACATCATTTTGGATATAAAGATGATCTGTTAAAAATTATGATCATGATTTGTTTTTGCAATTTTGCACAGCTGAAGCCAATTTTGTTAAACGTTATATACAGCGTTGCATTAATATTTAGTGCCTTCAATTTATTGTCAATTTCTGGCAGAGAACTGCATGCGAATCCTCACAGAATATAATATTCTTGAGGTTGCATCCCGTCTATTGTTGGTCACAACTTATATCATTGTGGGTTAGCTATAAAATAAGTTCTATATTAGGTAGCCTCTTTTTTAAAATCTAGATGCAAGTTAACTATTCATTCCTTTTTAGGTAACTGCAATTAAGTGCTAGCAATTATTATGGGTCTTCGACATTCAAATGAATGAAATCCTTCAACATTATCAAGTGATTCATTTAATGGTCTTCTGTTTGCCATTCTGCCCTTAAATAAATCATAGATTATTGTAAGAATCGCAGCTTCAAATTCTTCCAAGAATTAATGATGACCTTAAACTCTATGAAGACGAATTTTCATGTTGACGGTACACTCCTGAACTAATTGTATCGTCAAGCATGTTTCTTTTCCACGTGGAATATGCTTAGAATAGCATTAAACCTAGAGTTTAATAGTTTGGCAGGTTTTAAATCCTGCTACTAAACGATAATGAATTATGATACCACGCAAAATCTTGATTTAAATTTCTACGTGTTTATTTTAGCAAGTTTAGAATATAACCTTGCCCTTAGAGATCATTTTAAATGTCAGAAGTTCGGACTAAGTTATTTCATGCATTCATGTACACTGAACTATTTTAGCAAGTTTAGAATATAACCTTGCTCTTAGAGATAC

Ace file of the UniGene sp_v2.0_unigene213 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase A-2-activating protein [Arabidopsis thaliana] gb\|AAK95297.1\|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] dbj\|BAB03095.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76160.1\| phospholipase A-2-activating protein [Arabidopsis t	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	phospholipase a-2-activating protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	PUL	IPR013535	-	-
Sma3	PLAA family ubiquitin binding, PFU	IPR015155	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 763 - 314

Fln protein: MGADFEPYRLRCELRGHEEDVRGICICGDSGIATGSRDKTVRFWCVDETEKSRYTLSKTMVGHKSFVGPLAWIPANERFPEGGIVSGGMDTLVFVWDLSTGQAVQTMKGHQLQVTGVTLDDQGDILSSSIDCTVRRWRNGDTVESWPAHQAPIQAILKLPSGEVATGSTDTTVKLWSGSKCLHTFIGHTDTVRGLGLMPNVGILSASHDGSIRLWALSGESLVEMVGHTSLVYSVAAHSSGVIASGSEDRYTKLWRDATCIQSIEHPGCVWDVKFLPNGDLVTACSDGVVRIWTTDADRMAGTPELDAFEAQLSFYKSNTKTVGGIKVSELPGLEALQQPGTKNGQTKVIREGDTGVAYSWNSTEYKWDKIGEVVDGPDDLQGRKKLDGVAYDYVFDVDIEDGEPIRKLPYNRGDNPYFVAEQWLLKEGLPLTYREQIVQFILQNTGQANVPLDNSFVDPYTGANAYMPGQPSSFTSGSPPEKYNFKYIPKRGMLYFDTAQFDGILRKISEFNNAMTSDEGQRPLSLNDAESMRLNAIVAILKDTSHYHTSAFADTDMNILIKMLTSWPVQMLFPVFDIVKMMIYHPHGANLFVNCLQSGNDFLMDAFRRATTAPALAANQLTSIRAVVNAFRHACFKTWLVHHRSEILDLFSECCSSSNKNIRLSYSTLILNYTVLLIDSKDEDGQQQVLSAAMELGDAQEHEVDVRFRALVAIGTLMLDGLVKHQAIQLDAKSIAESAKSSKEAKIAEVGADIEHLIKSV*

Protein Length: 764

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGTACTTCCTTCTATGGTTATACTATTGGGACCAAGCCCAAACACACTCAATTAGATGACGCTATTTTGCCTGCGTACTTAGCACCGAAAGATTATTAAAGCAGCGCCCATTGTCTTTATGATTATTCTTCCGCCATTCGTCACGCTGTAATCGTTTGATATTCTCTTCGTCACGCTGCTCGGCTCAGCGTTCTGCAAAGCGAATCAGAGCA_-_ATGGGGGCGGATTTTGAGCCATATCGTCTACGATGTGAGCTCCGAGGTCACGAAGAAGACGTTCGTGGAATATGCATCTGTGGGGACAGTGGCATTGCCACAGGTTCAAGAGACAAGACTGTACGTTTTTGGTGTGTTGATGAAACAGAAAAAAGCAGATACACATTGTCAAAAACAATGGTGGGGCACAAAAGCTTTGTGGGACCTTTGGCCTGGATACCTGCTAATGAACGGTTTCCTGAAGGAGGGATCGTGTCAGGAGGAATGGATACTCTTGTCTTTGTATGGGATTTGAGCACAGGACAAGCAGTCCAGACCATGAAGGGCCATCAATTACAGGTCACAGGTGTTACTTTGGATGACCAGGGTGACATTCTATCTTCATCAATTGACTGCACTGTGAGGAGGTGGAGGAATGGGGATACTGTTGAATCCTGGCCGGCTCATCAAGCACCCATTCAGGCAATCTTGAAGTTACCTTCTGGAGAAGTTGCTACAGGCTCAACTGATACCACTGTGAAGCTCTGGAGCGGTTCAAAATGTCTTCATACTTTTATAGGACACACAGATACGGTTCGTGGATTGGGACTGATGCCAAATGTAGGAATTCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGGATAAAATTGGTGAAGTAGTGGATGGGCCTGACGATTTACAAGGGCGTAAAAAACTTGATGGTGTTGCATATGACTATGTATTTGATGTGGATATTGAAGATGGTGAACCCATTAGGAAGCTGCCATACAACCGTGGAGATAATCCCTACTTTGTTGCAGAACAATGGCTTTTGAAAGAAGGGCTTCCACTAACATATAGGGAACAGATTGTACAATTTATTTTGCAAAATACAGGGCAGGCAAATGTTCCATTGGACAATTCATTTGTTGATCCTTATACTGGTGCAAATGCTTATATGCCTGGACAGCCATCTTCATTTACGTCAGGTAGTCCCCCTGAAAAATATAACTTCAAGTATATTCCAAAGAGGGGAATGCTTTATTTTGACACAGCACAGTTTGATGGTATTCTTCGAAAGATTTCAGAATTCAATAATGCAATGACATCAGATGAGGGACAGCGACCACTTTCACTAAACGATGCAGAATCAATGCGACTTAATGCCATTGTGGCAATATTAAAAGACACTTCTCATTATCACACTAGTGCTTTTGCTGACACTGATATGAATATTTTAATCAAGATGCTTACTTCCTGGCCCGTTCAAATGTTATTTCCAGTGTTTGACATTGTGAAAATGATGATTTATCATCCGCATGGGGCAAACCTATTTGTCAACTGTCTGCAGAGTGGAAATGATTTTCTTATGGACGCTTTTAGGAGGGCTACAACTGCACCTGCTTTGGCTGCAAATCAGTTAACAAGTATTCGGGCAGTTGTAAATGCCTTTAGGCATGCATGTTTTAAAACATGGCTGGTTCATCATCGCAGTGAGATTCTTGACCTTTTTTCGGAGTGTTGTTCATCCTCAAACAAGAATATTCGGCTGTCATACTCTACCTTGATTCTGAACTATACAGTGTTACTAATTGATTCAAAAGATGAAGATGGTCAACAGCAAGTTCTTTCAGCTGCTATGGAGCTGGGAGATGCACAAGAACATGAAGTGGATGTAAGGTTCAGGGCACTTGTGGCAATTGGAACTCTTATGCTTGATGGACTGGTAAAACATCAAGCAATTCAATTGGATGCCAAAAGCATTGCTGAATCTGCAAAAAGTTCAAAGGAAGCCAAGATTGCAGAAGTTGGAGCAGATATTGAGCATCTGATCAAATCAGTGTGA___CATCATTTTGGATATAAAGATGATCTGTTAAAAATTATGATCATGATTTGTTTTTGCAATTTTGCACAGCTGAAGCCAATTTTGTTAAACGTTATATACAGCGTTGCATTAATATTTAGTGCCTTCAATTTATTGTCAATTTCTGGCAGAGAACTGCATGCGAATCCTCACAGAATATAATATTCTTGAGGTTGCATCCCGTCTATTGTTGGTCACAACTTATATCATTGTGGGTTAGCTATAAAATAAGTTCTATATTAGGTAGCCTCTTTTTTAAAATCTAGATGCAAGTTAACTATTCATTCCTTTTTAGGTAACTGCAATTAAGTGCTAGCAATTATTATGGGTCTTCGACATTCAAATGAATGAAATCCTTCAACATTATCAAGTGATTCATTTAATGGTCTTCTGTTTGCCATTCTGCCCTTAAATAAATCATAGATTATTGTAAGAATCGCAGCTTCAAATTCTTCCAAGAATTAATGATGACCTTAAACTCTATGAAGACGAATTTTCATGTTGACGGTACACTCCTGAACTAATTGTATCGTCAAGCATGTTTCTTTTCCACGTGGAATATGCTTAGAATAGCATTAAACCTAGAGTTTAATAGTTTGGCAGGTTTTAAATCCTGCTACTAAACGATAATGAATTATGATACCACGCAAAATCTTGATTTAAATTTCTACGTGTTTATTTTAGCAAGTTTAGAATATAACCTTGCCCTTAGAGATCATTTTAAATGTCAGAAGTTCGGACTAAGTTATTTCATGCATTCATGTACACTGAACTATTTTAGCAAGTTTAGAATATAACCTTGCTCTTAGAGATAC

Fln Alignment:

Contig213___AKRIRAMGADFEPYRLRCELRGHEEDVRGICICGDSG-IATGSRDKTVRFWCVDETEKSRYTLSKTMVGHKSFVGPLAWIPANERFPEGGIVSGGMDTLVFVWDLSTGQAVQTMKGHQLQVTGVTLDDQGD-ILSSSIDCTVRRW--RNGDTVESWPAHQAPIQAILKLPSGE-VATGSTDTTVKLWSGS--KCLHTFI-GHTDTVRGLGLMPN-VGILSASHDGSIRLWAL-SGESLVEMVGHTSLVYSVAAHSS----GVIASGSEDRYTKLW--RDATCIQSIE-HPGCVWDVKFLPNGDLVTAC---SDGVVRIWTTD
A9NPC1_____________ASEAQGSGNSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKR-----ELQGHAEGVSDMAWSSDSHY-----VCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIWVQE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
2661	11		88		0.923564
2663	11	88			0.923564
2665			88	11	0.923564
2675		12		87	0.992554
2676		12		87	0.992554
2677		12	87		0.992554
2707		85		14	0.993533
2930	16		83		0.994512
2932	20			80	0.995493
2938	33		66		0.997452
3059	25	75			0.996473
3061		75		25	0.996473
3206	10		90		0.90298
3215	10			90	0.90298
3216	83	16			0.994512
3217	83	16			0.994512
3218		16		83	0.994512
3222	83		16		0.994512
3223	83			16	0.994512
3235		20	80		0.995493
3237		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain