SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene206

Length: 2694 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene206
ATGGGTGTTGATTTACAGAATTGGCATCACAGGCATTTCTTTGGAGTAGAGCTTTGGTGGGGTGGAGCCTGGAAATATATAAAGGAAAAGGGCCGAGGGTGACCTCCAGAGCGATTTTTATCTAGATTATGGTGAAAATCTAATGATGTAGATGTTTGCAAGCAGCCCTCAACAGCATTTCAAAGAAATACAGTAGTTAATAACCAAGCAGGTAGAAAATCTTAGCTGGGTATCGTGATTTGATCCTAGAGATCTTTCAGGAAGCAATGTCCTTAGCATCTCCATGCCAGGAATCGATGAGGGGAGATGACAACAGTTATCAGACTAGTTCTTGGTATCGTGGAAACTTCTCAGGTGTTCCCGAAATCTCCAAAAACATGGGGATGCAGTACATGCCTGGAGGAATCGGTCTGAATCTCCAACGTGGTTGGGGAAATTCCTTCAGATCTTGTTCGACAGATTTAAGCCCAAAACAGAATGGCAACTTTGCTATTGATCACACATCTACGACTGGTGAGCGTAGTGCTGGAACCCTGAAGATGATTGATCAGAGGTCTCCAATTTCTCCCCTTTCTCCTCAAGGGATTGGATCTGACGGTTTGCCTCAAACCAGTCAGAGTCAAAGACTTTATTCCAGTGAAAGAAACCAAATGCATGATGATCTAATCCACAGTTCTTCACACAATCATGGTTCTTTTAAAGATCAAGTATACATTCATGAAAGTTTTCCATGTAACAATGAACTTTCACACGAGAGCTCTATATGTATTCAATCTTCTGGTGGAAGTCCTTTGTCTTCACAGCATTCACAATCATATTCTTCGGATTCTAGATATTTCCATTCAGCAGAGGATGCAGCCGACCTAGTCGGAAATGCTTACAGTGGCAATGGGCAGCCAGCGAATTTGAAGATTTTAGAGGAAATAGAAACAGCACTGTTGGGACCTGATGGCGACGATCCTGTAGATATGGACTATGCCTATGGGGATCATACACTTAATTCTAATTCAGAATGGAGTTTGGAGGCGTTGAGTGACTTAAACGATTTTCTTGACCAAACCTCCAACCCTGGTTACCCCCAAATAAATAATGCAGATAGCTCCAGGGTGCCAGATAACTTGCAGCAGCTAACAAATCACGGGGATCGAAATGTTAAAGAAGAAACAGTGAATGAAGTTAACTTGAAAATTGAACACTTCTCAACCAGCAGTTCTGATGAGGAACAACCGGAGATCGAAGAGTTGGAGATTCCCCAGGGTGATGTAAAATCTTTGCTTATTGAATGTGCTAAAGCTATTGCAGATGGTCGTAATGCAGATAATTTGATTGCAGGGCTGAGACAAGTTGTAGATATATTTGGGGATCCATTGCATAGGTTAGCTGCATATATGGTAGAAGGTCTTGTAGCAAGGTTGCATTTCTCAGGAGGACATATTTACAAAACCCTAAAATGCAAGGAGCCTACCAGTTCCGAACTCCTTTCTTACATGCATATTCTATATGAAGTTTGTCCTTATTTCAAATTTGGGTATGTAGCTGCAAATGGTGCCATCGCGGAAGCATTTAAAGACAAAGACAGGGTGCACATTATTGATTTTCAGATCGCTCAAGGTAGCCAGTGGGTAACATTAATTCAAGCATTTGCAGCAAGACAAGGTGGTTCGCCTCATGTCCGCATCACAGGTGTGGATGATCCTCAATCAGAGTATGCTCGAGGTCAAGGATTAAATTTAGTTGGCGAAAGATTATCAAAGCTTGCAGAAAGCTACCAAGTTCCTTTCGAATTTCATGGTTTGTCTGTTTTTGGGTCTGACGTTCATGCTGAGATGCTTGAGATTCGGCCCGGGGAAGCTTTGGCTGTAAATTTTCCTTTGCAGCTCCATCATATGCCTGATGAGAGTGTGAATACAAGTAATCATCGAGATCGGCTTTTAAGAATGGTCAAAGGCTTGTCTCCAAATGTGGTAACGTTGGTGGAGCAAGAAGCCAACACTAATACTGCACCTTTCTTACCCAGGTTCATGGAGACTTTGAGTTATTACACTGCTATGTTTGAATCTTTGGATGTAACTTTGCAAAGGGATAGCAAAGAGCGGGTCAGCGTGGAGCAGCACTGCCTAGCACGTGATATAGTGAATGTTATTGCCTGTGAAGGTGATGAAAGAGTAGAGAGGCATGAGCTTTTTGGTAAGTGGAGGTCCCGTCTGACTATGGCTGGCTTTAAATCTTACCCGCTGAGTGCACATGTTAACTCCACTATCAAGGTTGTCTTGAACTCCTATAATGAAAATTACAGACTTATAGAAAAGGATGAAGCTCTTTATCTGGGCTGGTTAGACAGGGACTTGATCGTGGCTTCGGCATGGAAGTAACAATGTGTTAACATAGCCTCTCCCAATGAAGGAAAGCATTTGATTGTGATTTGGGCCCAACTTATTAGAAACATTTAGCAGTACATGTCCAATTTCATCGATAGGACTTGTATGAATGGAAAGAGTATCTTATCCACAAGGTTATCGAAGCTGTTAGAGCTAAATTCAAGAGCCGAAAACAAGGATATTCCCATTTGTATTTGGGAATGACCAGAACTGAAGGGCAAAGGTCTGGGAACTTCCCTTGTTTATTTTGAGTTGTCTTTGCTTCTGGCTTTAATGCACACGATTTTGTTAATAATTAATTGTTTCATTTACGACG

Ace file of the UniGene sp_v2.0_unigene206 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS	-	-	94%
FL-Next	sp=Scarecrow-like transcription factor PAT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	gras family transcription factor	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate phosphoribosyltransferase.	EC:2.4.2.18	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	81%
Blast2go	signal transduction	GO:0007165	Biological Process	81%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	81%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDL7

Fln msg: your sequence is longer than subject: 702 - 490

Fln protein: MSLASPCQESMRGDDNSYQTSSWYRGNFSGVPEISKNMGMQYMPGGIGLNLQRGWGNSFRSCSTDLSPKQNGNFAIDHTSTTGERSAGTLKMIDQRSPISPLSPQGIGSDGLPQTSQSQRLYSSERNQMHDDLIHSSSHNHGSFKDQVYIHESFPCNNELSHESSICIQSSGGSPLSSQHSQSYSSDSRYFHSAEDAADLVGNAYSGNGQPANLKILEEIETALLGPDGDDPVDMDYAYGDHTLNSNSEWSLEALSDLNDFLDQTSNPGYPQINNADSSRVPDNLQQLTNHGDRNVKEETVNEVNLKIEHFSTSSSDEEQPEIEELEIPQGDVKSLLIECAKAIADGRNADNLIAGLRQVVDIFGDPLHRLAAYMVEGLVARLHFSGGHIYKTLKCKEPTSSELLSYMHILYEVCPYFKFGYVAANGAIAEAFKDKDRVHIIDFQIAQGSQWVTLIQAFAARQGGSPHVRITGVDDPQSEYARGQGLNLVGERLSKLAESYQVPFEFHGLSVFGSDVHAEMLEIRPGEALAVNFPLQLHHMPDESVNTSNHRDRLLRMVKGLSPNVVTLVEQEANTNTAPFLPRFMETLSYYTAMFESLDVTLQRDSKERVSVEQHCLARDIVNVIACEGDERVERHELFGKWRSRLTMAGFKSYPLSAHVNSTIKVVLNSYNENYRLIEKDEALYLGWLDRDLIVASAWK*

Protein Length: 703

Fln nts: ATGGGTGTTGATTTACAGAATTGGCATCACAGGCATTTCTTTGGAGTAGAGCTTTGGTGGGGTGGAGCCTGGAAATATATAAAGGAAAAGGGCCGAGGGTGACCTCCAGAGCGATTTTTATCTAGATTATGGTGAAAATCTAATGATGTAGATGTTTGCAAGCAGCCCTCAACAGCATTTCAAAGAAATACAGTAGTTAATAACCAAGCAGGTAGAAAATCTTAGCTGGGTATCGTGATTTGATCCTAGAGATCTTTCAGGAAGCA_-_ATGTCCTTAGCATCTCCATGCCAGGAATCGATGAGGGGAGATGACAACAGTTATCAGACTAGTTCTTGGTATCGTGGAAACTTCTCAGGTGTTCCCGAAATCTCCAAAAACATGGGGATGCAGTACATGCCTGGAGGAATCGGTCTGAATCTCCAACGTGGTTGGGGAAATTCCTTCAGATCTTGTTCGACAGATTTAAGCCCAAAACAGAATGGCAACTTTGCTATTGATCACACATCTACGACTGGTGAGCGTAGTGCTGGAACCCTGAAGATGATTGATCAGAGGTCTCCAATTTCTCCCCTTTCTCCTCAAGGGATTGGATCTGACGGTTTGCCTCAAACCAGTCAGAGTCAAAGACTTTATTCCAGTGAAAGAAACCAAATGCATGATGATCTAATCCACAGTTCTTCACACAATCATGGTTCTTTTAAAGATCAAGTATACATTCATGAAAGTTTTCCATGTAACAATGAACTTTCACACGAGAGCTCTATATGTATTCAATCTTCTGGTGGAAGTCCTTTGTCTTCACAGCATTCACAATCATATTCTTCGGATTCTAGATATTTCCATTCAGCAGAGGATGCAGCCGACCTAGTCGGAAATGCTTACAGTGGCAATGGGCAGCCAGCGAATTTGAAGATTTTAGAGGAAATAGAAACAGCACTGTTGGGACCTGATGGCGACGATCCTGTAGATATGGACTATGCCTATGGGGATCATACACTTAATTCTAATTCAGAATGGAGTTTGGAGGCGTTGAGTGACTTAAACGATTTTCTTGACCAAACCTCCAACCCTGGTTACCCCCAAATAAATAATGCAGATAGCTCCAGGGTGCCAGATAACTTGCAGCAGCTAACAAATCACGGGGATCGAAATGTTAAAGAAGAAACAGTGAATGAAGTTAACTTGAAAATTGAACACTTCTCAACCAGCAGTTCTGATGAGGAACAACCGGAGATCGAAGAGTTGGAGATTCCCCAGGGTGATGTAAAATCTTTGCTTATTGAATGTGCTAAAGCTATTGCAGATGGTCGTAATGCAGATAATTTGATTGCAGGGCTGAGACAAGTTGTAGATATATTTGGGGATCCATTGCATAGGTTAGCTGCATATATGGTAGAAGGTCTTGTAGCAAGGTTGCATTTCTCAGGAGGACATATTTACAAAACCCTAAAATGCAAGGAGCCTACCAGTTCCGAACTCCTTTCTTACATGCATATTCTATATGAAGTTTGTCCTTATTTCAAATTTGGGTATGTAGCTGCAAATGGTGCCATCGCGGAAGCATTTAAAGACAAAGACAGGGTGCACATTATTGATTTTCAGATCGCTCAAGGTAGCCAGTGGGTAACATTAATTCAAGCATTTGCAGCAAGACAAGGTGGTTCGCCTCATGTCCGCATCACAGGTGTGGATGATCCTCAATCAGAGTATGCTCGAGGTCAAGGATTAAATTTAGTTGGCGAAAGATTATCAAAGCTTGCAGAAAGCTACCAAGTTCCTTTCGAATTTCATGGTTTGTCTGTTTTTGGGTCTGACGTTCATGCTGAGATGCTTGAGATTCGGCCCGGGGAAGCTTTGGCTGTAAATTTTCCTTTGCAGCTCCATCATATGCCTGATGAGAGTGTGAATACAAGTAATCATCGAGATCGGCTTTTAAGAATGGTCAAAGGCTTGTCTCCAAATGTGGTAACGTTGGTGGAGCAAGAAGCCAACACTAATACTGCACCTTTCTTACCCAGGTTCATGGAGACTTTGAGTTATTACACTGCTATGTTTGAATCTTTGGATGTAACTTTGCAAAGGGATAGCAAAGAGCGGGTCAGCGTGGAGCAGCACTGCCTAGCACGTGATATAGTGAATGTTATTGCCTGTGAAGGTGATGAAAGAGTAGAGAGGCATGAGCTTTTTGGTAAGTGGAGGTCCCGTCTGACTATGGCTGGCTTTAAATCTTACCCGCTGAGTGCACATGTTAACTCCACTATCAAGGTTGTCTTGAACTCCTATAATGAAAATTACAGACTTATAGAAAAGGATGAAGCTCTTTATCTGGGCTGGTTAGACAGGGACTTGATCGTGGCTTCGGCATGGAAGTAA___CAATGTGTTAACATAGCCTCTCCCAATGAAGGAAAGCATTTGATTGTGATTTGGGCCCAACTTATTAGAAACATTTAGCAGTACATGTCCAATTTCATCGATAGGACTTGTATGAATGGAAAGAGTATCTTATCCACAAGGTTATCGAAGCTGTTAGAGCTAAATTCAAGAGCCGAAAACAAGGATATTCCCATTTGTATTTGGGAATGACCAGAACTGAAGGGCAAAGGTCTGGGAACTTCCCTTGTTTATTTTGAGTTGTCTTTGCTTCTGGCTTTAATGCACACGATTTTGTTAATAATTAATTGTTTCATTTACGACG

Fln Alignment:

Contig206___STSSSDXXXXXXXXXXXXQGDVKSLLIECAKAIADG--RNADNLIAGLRQVVDIFGDPLHRLAAYMVEGLVARLHFSGGHIYKTL-KCKEPTSSELLSYMHILYEVCPYFKFGYVAANGAIAEAFKDKDRVHIIDFQIAQGSQWVTLIQAFAARQGGSPHVRITGVDDPQSEYARGQGLNLVGERLSKLAESYQVPFEFHGLSVFGSDVHAEMLEIRPGEALAVNFPLQLHHMPDESVNTSNHRDRLLRMVKGLSPNVVTLVEQEANTNTAPFLPRFMETLSYYTAMFESLDVTLQRDSKERVSVEQHCLARDIVNVIACEGDERVERHELFGKWRSRLTMAGFKSYPLSAHVNSTIKVVLNSYNENYRLIEKDEALYLGWLDRDLIVASAWK
Q9LDL7_____________STASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1619	33		66		1.0
1645	87			12	0.992554
1646			87	12	0.992554
1779		28		71	1.0
1814	12			87	0.992554
1815			87	12	0.992554
1872	33	66			1.0
1882	16		83		0.994512
1957	16			83	0.994512
2011		25		75	1.0
2078		11		88	0.923564
2086	12		87		0.992554
2105	88			11	0.923564
2106	11			88	0.923564
2124	87		12		0.992554
2501		28		71	1.0
2557	75	25			1.0
2562		87		12	0.992554
2563	75	12	12		0.975346
2564		85		14	0.993533
2565		85	14		0.993533
2566	85	14			0.993533
2567		28		71	1.0
2568	85	14			0.993533
2569	85		14		0.993533
2570		14		85	0.993533
2572	16			83	0.994512
2575	83		16		0.994512
2577	83	16			0.994512
2579	83	16			0.994512
2580	66		16		0.988813
2589			80	20	0.995493
2596	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain