SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene205

Length: 2204 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene205
GTTTGAAAGAAGCAAGACACCTGTTACGCGACAAATTCCAAAGGTTCGAACAAGTGAGGCTTACGCCTGTATGAAAAGATCTCAAAGGCCTCCTAATTCGTCGGAATCTGAATGTAATATTACCCGACGAGTTGCTGCATCTGGTAATGAATCGGGCCAGCAAAAACATTTGGTAAAGGAATTGCAGGAAAAGGAAGAAAAACTTCAAAATGAACTTCTACTCGAGCAGGAAGAGCTAAATAGGGCACTGCATAAAGTTGCCGAGTTGGAGAAAGAGCTCAGCACGAAGTGTGGTGAAATTGAGTATTTGAATAAGATAATTGATTGTCTGAAAACCGAGAACTCTGCAAACGTAGTACAGCAGTCACAGAAAATGAAAGATTTGAAGGCTGAACTTACCCAATTGCGCGACTTGAACAAGGAACTTGAGCAGCAGAAAAGAGAAATGGCAAACAAGCTTGAAGCAGCGGAATCGCAGTTTCGTCCTTTAAGCCATGCCACTGAGGCCAAGATAAATGAACGACCTAACGGCATAGGGGTTTCCGTCCCTCTTCTATCAAAGACCATATCAACAGAGCTTGCGGGAAAATATCCTGAATCTAAAGTCAAACACGATTCGATGTTCCGTAGCCTTGAACATGGTAAGGTGGAAATGGCAAGGAAAACTATGGTAGAGAATGAAGCAATAGCTGTCAAGCAGCCTCCTTTGACAAAATTTATCTCATTAGAAGATGGAAACAAGCTATTAAACTTACACAAGCCTCCTCCAAAACCTCTGTCAGGAAATACCGCAGGCCTAACTATTGCATCTCCAAAAAGTGACAGCAGTGTGCCAGCACCACCGCCGCCGCCACCACCTCCTACTCATCACGCCCTTCATCCTAAGTTCACAGTTAGAAAAGATGTTGTGCAGAAAGCTCCAGAAGTAGTCAAGTTTTACCAGTCATTGATGAAACGAGATGCCAAAAAAGACACATGTGGAACTGGAATTTTTGATAATCAAGATGTAGCGATTGCTCACAGTGACATGATTGGAGAAATCAAGAATCGTTCTGCACATTTACTGGCAATCAAATCAGATGTGGAGACAAAAGGTCACTTTGTCCGATCCTTGATAAGAGAAGTGCAGGCTGCAGCATATACAGACATCGACGATGTTCTAGCTTTTGTTCAGTGGCTTGACGATGAGCTTGCTTCTCTTGTAGATGAGAGAGCAGTCCTGAAACATTTTGACTGGCCAGAGAAGAAAGCTGACATAATGCGGGAAGCTGCATTTGGATACCAGGATGCGAAAAAGCTGGAATCAGAAGTTTGGCAATATGAAGATGACCTTCGTCAGCCTTGTGATGTTGCCTTAAAGAAGATGACAGTATTATTAGAAAAGCTGGAGCAAAGTGTCTATAACCTGCTACGTAAAAGAGAAACATCAATTACCGTCTACAAACAGTTTCATATTCCAACTGATTGGATGCTTGACAGTGGCATGATAAGCAAGATAAAGGTGGCTTCTGTTAAACTAGCCAAAAAGTACATGAACCGAATATCTATCGAGCTTGAATCAATGGGAAACCCTGAGAAGGAACCTGCACTGGAGTTCTTGCTGCTTCAAGGCGTGCGTTTTGCTTATAGAGCTCATCAGTTTGCAGGAGGATTTGATGAAGAAACAATGCATGCTTTTGAGGAATTGAGAAAACTAGCCTGCATCCATGATGAAGAGCAACAAAATTTACAGTTGTCTGGTTTATCAGCTCAGTAGCCTTCCAAAGCAAACACCTATGATTCTTGAAAGATAATGATGTGTGTAATAAGACATTAAGTTCTATACAGCCACCATGAATTTCAAGAATAAACTCCGTCTCTCCAATTGGATTTGTTAGTTTGTTCTCATTTGCAAGGTCCTAGGACCAAATCACTGAGAGCACACTACTCTGCATATGCCAATGTGCCGTTATTCAGCCCTGTTGCATTGTATTGGACTTTTGAGTCTTGACAACTGCAGTTTTGGATGATCTCTATGGTTGTTGGTCCCTTCTATGTATGGGATGGGCCATGATGATGGACTGCTTTGAGTGAAACTGTAAGAGGATAGTCCCTGATCGAAAATTTTAGGTGTATTGTGTGCACCTCCCAAGCCACAATGAGAACGTGGGTACCTATTATGCATGGAGTTATATTTCAGCCCTGTGCTTTGCTAGATAAAATTG

Ace file of the UniGene sp_v2.0_unigene205

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spc7 multi-domain protein	-	-	2.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein chloroplastic-like	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: your sequence is longer than subject: 562 - 314

Fln protein: MKRSQRPPNSSESECNITRRVAASGNESGQQKHLVKELQEKEEKLQNELLLEQEELNRALHKVAELEKELSTKCGEIEYLNKIIDCLKTENSANVVQQSQKMKDLKAELTQLRDLNKELEQQKREMANKLEAAESQFRPLSHATEAKINERPNGIGVSVPLLSKTISTELAGKYPESKVKHDSMFRSLEHGKVEMARKTMVENEAIAVKQPPLTKFISLEDGNKLLNLHKPPPKPLSGNTAGLTIASPKSDSSVPAPPPPPPPPTHHALHPKFTVRKDVVQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELESMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLSGLSAQ*

Protein Length: 563

Fln nts: GTTTGAAAGAAGCAAGACACCTGTTACGCGACAAATTCCAAAGGTTCGAACAAGTGAGGCTTACGCCTGT_-_ATGAAAAGATCTCAAAGGCCTCCTAATTCGTCGGAATCTGAATGTAATATTACCCGACGAGTTGCTGCATCTGGTAATGAATCGGGCCAGCAAAAACATTTGGTAAAGGAATTGCAGGAAAAGGAAGAAAAACTTCAAAATGAACTTCTACTCGAGCAGGAAGAGCTAAATAGGGCACTGCATAAAGTTGCCGAGTTGGAGAAAGAGCTCAGCACGAAGTGTGGTGAAATTGAGTATTTGAATAAGATAATTGATTGTCTGAAAACCGAGAACTCTGCAAACGTAGTACAGCAGTCACAGAAAATGAAAGATTTGAAGGCTGAACTTACCCAATTGCGCGACTTGAACAAGGAACTTGAGCAGCAGAAAAGAGAAATGGCAAACAAGCTTGAAGCAGCGGAATCGCAGTTTCGTCCTTTAAGCCATGCCACTGAGGCCAAGATAAATGAACGACCTAACGGCATAGGGGTTTCCGTCCCTCTTCTATCAAAGACCATATCAACAGAGCTTGCGGGAAAATATCCTGAATCTAAAGTCAAACACGATTCGATGTTCCGTAGCCTTGAACATGGTAAGGTGGAAATGGCAAGGAAAACTATGGTAGAGAATGAAGCAATAGCTGTCAAGCAGCCTCCTTTGACAAAATTTATCTCATTAGAAGATGGAAACAAGCTATTAAACTTACACAAGCCTCCTCCAAAACCTCTGTCAGGAAATACCGCAGGCCTAACTATTGCATCTCCAAAAAGTGACAGCAGTGTGCCAGCACCACCGCCGCCGCCACCACCTCCTACTCATCACGCCCTTCATCCTAAGTTCACAGTTAGAAAAGATGTTGTGCAGAAAGCTCCAGAAGTAGTCAAGTTTTACCAGTCATTGATGAAACGAGATGCCAAAAAAGACACATGTGGAACTGGAATTTTTGATAATCAAGATGTAGCGATTGCTCACAGTGACATGATTGGAGAAATCAAGAATCGTTCTGCACATTTACTGGCAATCAAATCAGATGTGGAGACAAAAGGTCACTTTGTCCGATCCTTGATAAGAGAAGTGCAGGCTGCAGCATATACAGACATCGACGATGTTCTAGCTTTTGTTCAGTGGCTTGACGATGAGCTTGCTTCTCTTGTAGATGAGAGAGCAGTCCTGAAACATTTTGACTGGCCAGAGAAGAAAGCTGACATAATGCGGGAAGCTGCATTTGGATACCAGGATGCGAAAAAGCTGGAATCAGAAGTTTGGCAATATGAAGATGACCTTCGTCAGCCTTGTGATGTTGCCTTAAAGAAGATGACAGTATTATTAGAAAAGCTGGAGCAAAGTGTCTATAACCTGCTACGTAAAAGAGAAACATCAATTACCGTCTACAAACAGTTTCATATTCCAACTGATTGGATGCTTGACAGTGGCATGATAAGCAAGATAAAGGTGGCTTCTGTTAAACTAGCCAAAAAGTACATGAACCGAATATCTATCGAGCTTGAATCAATGGGAAACCCTGAGAAGGAACCTGCACTGGAGTTCTTGCTGCTTCAAGGCGTGCGTTTTGCTTATAGAGCTCATCAGTTTGCAGGAGGATTTGATGAAGAAACAATGCATGCTTTTGAGGAATTGAGAAAACTAGCCTGCATCCATGATGAAGAGCAACAAAATTTACAGTTGTCTGGTTTATCAGCTCAGTAG___CCTTCCAAAGCAAACACCTATGATTCTTGAAAGATAATGATGTGTGTAATAAGACATTAAGTTCTATACAGCCACCATGAATTTCAAGAATAAACTCCGTCTCTCCAATTGGATTTGTTAGTTTGTTCTCATTTGCAAGGTCCTAGGACCAAATCACTGAGAGCACACTACTCTGCATATGCCAATGTGCCGTTATTCAGCCCTGTTGCATTGTATTGGACTTTTGAGTCTTGACAACTGCAGTTTTGGATGATCTCTATGGTTGTTGGTCCCTTCTATGTATGGGATGGGCCATGATGATGGACTGCTTTGAGTGAAACTGTAAGAGGATAGTCCCTGATCGAAAATTTTAGGTGTATTGTGTGCACCTCCCAAGCCACAATGAGAACGTGGGTACCTATTATGCATGGAGTTATATTTCAGCCCTGTGCTTTGCTAGATAAAATTG

Fln Alignment:

Contig205___VQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELE-SMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLS
A9NUN1_____________VHRAPELVEFYQSLMKREAKKEAA-TMASAASNVADVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRASAYKNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNDPDKEPIKEFLLLQGVRFAFRVHQFAGGFDAESMNAFEDLRNR--VHGQAEETDKMS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1300			88	11	0.923564
1301		33	11	55	1.0
1318	11		88		0.923564
1321	88			11	0.923564
1373			87	12	0.992554
1612	88	11			0.923564
1614			88	11	0.923564
1619	11	88			0.923564
1620		11	88		0.923564
1621		11		88	0.923564
1624			11	88	0.923564
1629	88		11		0.923564
1632		11	88		0.923564
1648	88			11	0.923564
1725	14	85			0.993533
1726	85	14			0.993533
1804	12		87		0.992554
1805		12		87	0.992554
1806	12		87		0.992554
1808	87			12	0.992554
2028	11		88		0.923564
2029	11		88		0.923564
2031		88	11		0.923564
2032		88		11	0.923564
2091		14		85	0.993533
2093			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain