SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene185

Length: 2346 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene185
CGTCGTGACCTTGGCTGTCACTCGTCGTACCTTGGCTGAAGAGCTTCTCCTCTGGCATCTGACTTTTCACAAGCTTCTTGGTTCTTTGTCTATACATTGCGGCTGATATTAGGCTTTTTGTTTTTCTCTTCCATCAAGTTCAATGGGATCGAGGTTCCCTTCACACCAGCTCAGCAATGGGCTATATGTTTCAGGCCGACCTGAGCAGTATAAGGAAAGACAACCTACCATGAGCTCCACAGCCATGCCTTACACTGGAGGTGACATTAAGAGGTCTGGGGAGCTTGGAAAAATGTTTGATATTCCCGTGGACAATTTGAAGTCGAAAAAATCTGGACCTGTTGGGAATGCCCCCATGAGGACTGGATCATTTGGTGGGGCTGCATCACATTCGGGGCCTCTCCCATCAAACCCTGGATCACGGTCTAACTTTTCAATATCAGGACCTGTATCATCTGTAGTTCCAGGTTCTGTGCCAGGAACAAGTTCAGCAAGGCAAAAATCCAACTCAGGACCACTCTCTAGGAATGGGGAATCTGTTAAGAAGACTTCTGGTCCTCTTTCTGGAGGGGTCCCAACAGCTTCCCGACAAAATTCTGGGCCTCTTGCCCCTTCACTACCTGCAACTGGGCTCATTACTTCTGGTCCGATTTCTTCAGGTCCTCTCAATTCCTCTGGAGCACCTAGAAAAGTATCTGGGCCTTTGGATTCATCTGCATCGGCTAAGCTGCATAGTGTATCTATGGTAAACAGTCAGTCTGTCACCAATCTCAGCCATGATCCAGGATATTCCTTCAAGAGAAACTACCCCAGAGTGATCCTTTGGACTGTTATTCCACTTTTTTTTGTGGGTTTCATAGCTGGGGGCTTCATTCTGGCGGCGGTTCGGAATGCAATTTTGCTTGTTGTAGTGGTGGTTCTCTTTTTGGCTGTCACAGTGCTTGTGATGTGGAACACTTGGTGGGGAAAGAGGGCAGTTACAGGGTTCGTGTCAGGATATCCACATGCAGAGCTGAGAACGGCAAAAGATGGGCAGTATGTCAAGGTCTCCGGGGTTGTCACATGTGGAGGTGTTCCACTTGAATCTTCATATCAAAGGGTTTCTAGATGTGTGTATACATCTACAGGTCTATATGAGTACAGAGGATGGGATTCAAAGGCTGCAAATGCTAACCATCGACATTTTACATGGGGGCTGAGATACTTAGAGAGGCATATTGTGGATTTCTACATATCAGACTTTCAATCAGGCTTAAGAGCATTGGTAAAAGTTGGATATGGTGCAAGAGTTACACCGTATGTGGACGAGAGTACTATCATCGACGTAAACAAAAATATCCGGGATCTACCGTCAAACTTTATACGATGGCTCGGGGAAAGAAATCTTTCCAGTGATGATCGTGTAATGCGTCTGAAAGAAGGTTATATCAAAGAAGGAAGTACAGTAAGTGTCATGGGAGTGGTTCAGCGAAATGACAGTGTTCTAATGATTGTTCCTCCCCCAGAACCAGTGTCTACTGGCTGCCAATGGGGAAAGTTCCTCCTACCAGCTAGCCTTGAAGGAATTATTTTGAAATGTGAAGATGCTTCTTCAAGGGCTGATACTATACACGTGTAGCACTTACTGAGCTATATTTTACCTGGCTTCATGGTTGAAAAATTACTGATAGGAGTTTACTATCTCTAGTTTTTTTCTTCAAGTACTTAAAAGGTCTTCGCTTCTTCAAAATGGGAATTTTATTCGTCATTATATTTGATAAGAAGGCATTGTCAAAGAGCTCAGGCATTGACCACATTGAGAATGTTTTATAAAGAACCTAGAAGATGGCACAGAGTTTTGGTATCTTCGAAGATTGCTTTGATGGGAATGTAATGCTTTTATACTATCAGTATTTGAGGTGGGTTATCTTACTGCCGGTGATAACATCAAAATTTAGGCGAAAGATGAAAGCTGATAAATACAGGTGGTACAGAAGCTCATTACCTATATATCTACTTGAACATTGGTTGTTTATCCCACCAGGAAAAAAGGCTGTGTCCTCTTCAACTTCGTATTCATGCATTGGATTGCAATGTGTTTTGTACAAGCTAATTATCATGTTTTTACAAATTTCATGTATTTCCTGATGTGCGGGAACTGCTGGACTCGTAGAGGTTGTACGCTTACTGCAAAAGCGTCCATTATATGTAATTTGTGATTAATGTTGTAAATAAAGCATAAGGGTCAAGTTCTACTGTAGGGTGAAATGTCTTTTTGTATGATATGTTTAGATTCGAAACTATTCCTACCAATAACCTGAATCATTGTTTTGGTCATTACGAAGTTTGTTCTTATTGACTTTTCTT

Ace file of the UniGene sp_v2.0_unigene185

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp\|Q9FZ45.1\|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb\|AAF99847.1\|AC051629_14 Unknown protein [Arabidopsis thaliana] gb\|AAK92824.1\| unknown protein	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	uncharacterized membrane protein at1g16860-like	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, UBP-type	IPR001607	-	-
Sma3	Pentaxin	IPR001759	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR84

Fln msg: your sequence is shorter than subject: 492 - 510

Fln protein: MGSRFPSHQLSNGLYVSGRPEQYKERQPTMSSTAMPYTGGDIKRSGELGKMFDIPVDNLKSKKSGPVGNAPMRTGSFGGAASHSGPLPSNPGSRSNFSISGPVSSVVPGSVPGTSSARQKSNSGPLSRNGESVKKTSGPLSGGVPTASRQNSGPLAPSLPATGLITSGPISSGPLNSSGAPRKVSGPLDSSASAKLHSVSMVNSQSVTNLSHDPGYSFKRNYPRVILWTVIPLFFVGFIAGGFILAAVRNAILLVVVVVLFLAVTVLVMWNTWWGKRAVTGFVSGYPHAELRTAKDGQYVKVSGVVTCGGVPLESSYQRVSRCVYTSTGLYEYRGWDSKAANANHRHFTWGLRYLERHIVDFYISDFQSGLRALVKVGYGARVTPYVDESTIIDVNKNIRDLPSNFIRWLGERNLSSDDRVMRLKEGYIKEGSTVSVMGVVQRNDSVLMIVPPPEPVSTGCQWGKFLLPASLEGIILKCEDASSRADTIHV*

Protein Length: 493

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTACCTTGGCTGAAGAGCTTCTCCTCTGGCATCTGACTTTTCACAAGCTTCTTGGTTCTTTGTCTATACATTGCGGCTGATATTAGGCTTTTTGTTTTTCTCTTCCATCAAGTTCA_-_ATGGGATCGAGGTTCCCTTCACACCAGCTCAGCAATGGGCTATATGTTTCAGGCCGACCTGAGCAGTATAAGGAAAGACAACCTACCATGAGCTCCACAGCCATGCCTTACACTGGAGGTGACATTAAGAGGTCTGGGGAGCTTGGAAAAATGTTTGATATTCCCGTGGACAATTTGAAGTCGAAAAAATCTGGACCTGTTGGGAATGCCCCCATGAGGACTGGATCATTTGGTGGGGCTGCATCACATTCGGGGCCTCTCCCATCAAACCCTGGATCACGGTCTAACTTTTCAATATCAGGACCTGTATCATCTGTAGTTCCAGGTTCTGTGCCAGGAACAAGTTCAGCAAGGCAAAAATCCAACTCAGGACCACTCTCTAGGAATGGGGAATCTGTTAAGAAGACTTCTGGTCCTCTTTCTGGAGGGGTCCCAACAGCTTCCCGACAAAATTCTGGGCCTCTTGCCCCTTCACTACCTGCAACTGGGCTCATTACTTCTGGTCCGATTTCTTCAGGTCCTCTCAATTCCTCTGGAGCACCTAGAAAAGTATCTGGGCCTTTGGATTCATCTGCATCGGCTAAGCTGCATAGTGTATCTATGGTAAACAGTCAGTCTGTCACCAATCTCAGCCATGATCCAGGATATTCCTTCAAGAGAAACTACCCCAGAGTGATCCTTTGGACTGTTATTCCACTTTTTTTTGTGGGTTTCATAGCTGGGGGCTTCATTCTGGCGGCGGTTCGGAATGCAATTTTGCTTGTTGTAGTGGTGGTTCTCTTTTTGGCTGTCACAGTGCTTGTGATGTGGAACACTTGGTGGGGAAAGAGGGCAGTTACAGGGTTCGTGTCAGGATATCCACATGCAGAGCTGAGAACGGCAAAAGATGGGCAGTATGTCAAGGTCTCCGGGGTTGTCACATGTGGAGGTGTTCCACTTGAATCTTCATATCAAAGGGTTTCTAGATGTGTGTATACATCTACAGGTCTATATGAGTACAGAGGATGGGATTCAAAGGCTGCAAATGCTAACCATCGACATTTTACATGGGGGCTGAGATACTTAGAGAGGCATATTGTGGATTTCTACATATCAGACTTTCAATCAGGCTTAAGAGCATTGGTAAAAGTTGGATATGGTGCAAGAGTTACACCGTATGTGGACGAGAGTACTATCATCGACGTAAACAAAAATATCCGGGATCTACCGTCAAACTTTATACGATGGCTCGGGGAAAGAAATCTTTCCAGTGATGATCGTGTAATGCGTCTGAAAGAAGGTTATATCAAAGAAGGAAGTACAGTAAGTGTCATGGGAGTGGTTCAGCGAAATGACAGTGTTCTAATGATTGTTCCTCCCCCAGAACCAGTGTCTACTGGCTGCCAATGGGGAAAGTTCCTCCTACCAGCTAGCCTTGAAGGAATTATTTTGAAATGTGAAGATGCTTCTTCAAGGGCTGATACTATACACGTGTAG___CACTTACTGAGCTATATTTTACCTGGCTTCATGGTTGAAAAATTACTGATAGGAGTTTACTATCTCTAGTTTTTTTCTTCAAGTACTTAAAAGGTCTTCGCTTCTTCAAAATGGGAATTTTATTCGTCATTATATTTGATAAGAAGGCATTGTCAAAGAGCTCAGGCATTGACCACATTGAGAATGTTTTATAAAGAACCTAGAAGATGGCACAGAGTTTTGGTATCTTCGAAGATTGCTTTGATGGGAATGTAATGCTTTTATACTATCAGTATTTGAGGTGGGTTATCTTACTGCCGGTGATAACATCAAAATTTAGGCGAAAGATGAAAGCTGATAAATACAGGTGGTACAGAAGCTCATTACCTATATATCTACTTGAACATTGGTTGTTTATCCCACCAGGAAAAAAGGCTGTGTCCTCTTCAACTTCGTATTCATGCATTGGATTGCAATGTGTTTTGTACAAGCTAATTATCATGTTTTTACAAATTTCATGTATTTCCTGATGTGCGGGAACTGCTGGACTCGTAGAGGTTGTACGCTTACTGCAAAAGCGTCCATTATATGTAATTTGTGATTAATGTTGTAAATAAAGCATAAGGGTCAAGTTCTACTGTAGGGTGAAATGTCTTTTTGTATGATATGTTTAGATTCGAAACTATTCCTACCAATAACCTGAATCATTGTTTTGGTCATTACGAAGTTTGTTCTTATTGACTTTTCTT

Fln Alignment:

Contig185___SRFPSHQLSNGLYVSGRPEQYKERQPTMSSTAMPYTGGDIKRSGELGKMFDIPVDNL-KSKKSGPVGNAPMRTGSFGGAASHSGPL--------------PSNPGSRSNFXXXXXXXXXXXXXXXXXXXARQKSNSGPLSRNGE-----------SVKKTSGPLSGGVPTASRQNSGPLAPSLPATGLITSGPISSGPLNSSGAPRKV-SGPLDSSASAKLHSVSMVNSQSVTNLSHDPGYSFKRNYPRVILWTVIPLFFVGFIAGGFIXXXXXXXXXXXXXXXXXXXXXXXXMWNTWWGKRAVTGFVSGYPHAELRTAKDGQYVKVSGVVTCGGVPLESSYQRVSRCVYTSTGLYEYRGWDSKAANANHRHFTWGLRYLERHIVDFYISDFQSGLRALVKVGYGARVTPYVDESTIIDVNKNIRDLPSNFIRWLGERNLSSDDRVMRLKEGYIKEGSTVSVMGVVQRNDSVLMIVPPPEPVSTGCQWGKFLLPASLEGIILKCEDAS
B8LR84_____________SRISAHQLSNGLYVSGRPEQYKDKQPTMSSTAVPYTGGDIKKSGELGKMFDIPVESTNKMKKSGSFQKAPAQ----GHGTSNSGPLTSGGAPRSAFSASGPINPGGISRQSTGAGNSQGSKSGPLSGNLGRQISQSGPLNRSGDMAVGPNPKAAPSSGKNSGPQSSA-PTIVRTNSGNL---LPATGLITSGPISSGPLSSSGALKKTTSGPLDPSG-APVKIVSINQNQAVSNLSNAEEYSFQKGFPKIILWMVILVFIMGFIAGGFLVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNKDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLERHVAEFYISDFQSGLRALVKAGYGAHVTPCVEESTIVDIGPKNKDLPSGFVRWLAERNLSGDDRVMRLKEGHIKEGSTVTVMGVVQRHENVLMIVPPRERVTTGCQLGKFLLPGNVEGLIIACNETS

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
535	40		60		1.0
574			80	20	0.995493
886			57	42	1.0
919		46	53		1.0
922		46		53	1.0
923		46	53		1.0
925		46	53		1.0
926	46			53	1.0
927		46		53	1.0
928		46		53	1.0
1572		12		87	0.992554
1573	12			87	0.992554
1589	83		16		0.994512
1620	87		12		0.992554
1623	87			12	0.992554
1624		87	12		0.992554
1626		12		87	0.992554
1629		12		87	0.992554
1630	12		87		0.992554
1652	87		12		0.992554
1653		12		87	0.992554
1727			75	25	0.996473
1728		80		20	0.995493
1730	80			20	0.995493
1731	80		20		0.995493
1732	80		20		0.995493
1733			20	80	0.995493
1773		87		12	0.992554
1906			11	88	0.923564
2091	87		12		0.992554
2249	11			88	0.923564
2250		11	88		0.923564
2252	88			11	0.923564
2253	88			11	0.923564
2259	12			87	0.992554
2260		12		87	0.992554
2311	11			88	0.923564
2312		11		88	0.923564
2313	11		88		0.923564
2326		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain