SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene177

Length: 894 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene177 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAE44475.1\| WD repeat protein [Arabidopsis thaliana] gb\|AEE85686.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	72%
Blast2go	acquisition of desiccation tolerance	GO:0048700	Biological Process	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
330	23	76			1.0
545	85		10		0.999793
583		14		85	0.993533
653		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain