SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene175

Length: 3163 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene175
ACAGAAACAGCGAATAGCAATCTCTAGAGCTATAGTTAAAAATCCAGCGATACTTCTCCTGGACGAGGCCACCAGTGCCTTGGATTCAGAATCTGAAAAAAGTGTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTTGGGATGTCGGGAGCAATATTTGCAGGAGGGCAAATACCCTTGTTTGCCCTGGGAGTCACTCAAGGCATGGTGGCCCTTTACAGTGCGGATTACGGTTACACCAAAAGTGAAATACGCAAAATCTGCTTGCTTTTTTGCACCGCTGCTGTGCTCACAGTCTTTGCACATGTGGTGGAACATGTCAACTTCGCAACAATGGGTGAACGTCTTACATTACGTGTGAGGGAGATGATGTTCGCAGCAATCCTGCGAAATGAAGTGGGGTGGTTTGATGATAACAGCAACAACAGTGGCCTGGTGTCTTCTCGGTTGGCGTCGGACGCAACATTAGTGAGAGGTTTGGTGGTAGACCGTGGGTCCATTCTACTGCAAAACTTGTCGCTCATTGTGACTGCAGTTATAATTGCATTCATCGAGCAATGGCGTATCACCCTGGTTATATTGGCCACTTACCCCTTCCTCGTCATTTCCCAGATGTGTGAGAGGTTCTTCATGACAGGATATGGGGGAAACCTGAGCAAAGCTTATCTAAAAGCCAATATGATGGCCACCGAAGGGGTGAGCAATATCAGAACAGTGGCGGCCTTTTGTGCTGAAGAGAAACTCATCGACATGTTCAGCAGAGAATTAGAGGAGCCACGAAAAAAATCTTTTATTCGTGGGCAAATAGCAGGATTCTTCTACGGAATTTCACAGTTCTCCATGTTCAGCTCCTATGGTTTGGCCCTGTGGTATGCCTCCACTCTCATCAAGAACTACGAAGCATCATTTGGGTCCGTGATGAAAACGTTCATGGTTCTCATAGTCACAGCCCTGGGCATGGCAGAGACCCTTGCAGTCTGCCCTGATTTAATCAAGGGCACAGATGCTGTGAGCTCTGTATTTGAAATTGTGGACAGGAAAACAGAAATTCCTCCAGACGACCCAAATGGCGAAGTTCTGACCCATGTACAAGGGGTGATCCAGTTGAAACATGTAGATTTCAGCTACCCTGCAAGGCCGGATGTGAAAATTTTTGAGGACTTCAACCTTGTAGTAAAATCTGGTCGATCTGTGGCACTGGTTGGTTCCAGTGGCTCGGGAAAAAGTTCAATTCTTGCTCTGATATTGAGATTCTACGATCCAACTGCAGGCAAGGTGATGGTCGATGGCATAGATATCAAGAAATTGAAGGTGAGGTCATTGCGTAAACACATAGGTCTAGTTCAGCAGGAACCTGCTCTGTTCGCCACTACCATATTCGATAATATCATCTATGGAAGAGATGGAGCCACTGAAGCTGAGGTTATTGAAGCTGCTAAATTGGCCAATGCCCACAACTTTATCAGTAGCCTGCCAGATGGGTATCGGACCGAGGTGGGTGAGAGGGGAGTTCAGTTGTCAGGGGGGCAGAAACAGAGAGTTGCCATTGCTAGAGCAGTGCTCAAAGATCCTGCTATTCTACTTTTAGATGAGGCCACCAGTGCCCTTGATGCTGAATCTGAGAATGTTGTGCAACAGGCATTGAACCAGCTGATGAAGAACAGGACTACTGTTATGGTAGCCCATCGTCTGTCTACTGTTCAGAATGCTGATGTCATTGCTGTTTTGCAGGATGGTAAAATTGTTGAGCAAGGCTCTCATTCCAGTCTTCTCAACAAGGATGGTGCCTATTCAAAGCTTGTCAGTCTTCAACAACATCAATGACTTCTACACAGGGTTAGGCTTCCAGTCTATATTTCATCTTGGGTTCAGTATGGTGCCTATTCAGAGCTTGTCAGTCCTCAACAACATCAATGATTTCTACATAGGGTTAGCTTTCCAATCTAGTTTTCATCTTGGGTTTCATAAAACATAGTTGGATGGGTTAAGCTTGAATTTAACAGTGATACATATTGTGTAGATGTTCTCTATACTATGATCACGTGAAAAAAATATTGGTCAGATAATGTGAAAACAACTGATACTCTGTTGTCTTCGGTGATTGGAATAAAAACACACATTGGATTCTCTGTCTGGGTATTAAGCAGTAAACAGATTGTAAAGACATGGAATCTCTTGATGGGCCGCACAGCAATAAGGTTGCAGGATAGGAGACTTGGTAGATTGCCAGTAGAGAATTAAACATTGATTCATGAGGTGTCATGCACGAGTGGCCGTGCTTTTGTATTTCAATAAATATGCAGTTTATCACTTTCTGGATTGCTGGTTGCATTTGATAAAAAGCTGAAAGTGCAAATAGCTCTGAATGAAGCTTCGATTAGTCCATGGAAACGTTTACAGATATGTAAGCTGATCTGAAATATGTAGCTGTGAATGAAATGTGCAGAGGCTTTGCAGAAAGTTGTTACATTATACGAAGAATTTAACTCAATTTAGATGAAATGAATATTGATTTCAAATATTAGATATTTGTGAGATGGTTTAATATTTAAATATTTGGTTGAATGGACACATTCAATTGTTGGTTGTGAAATATCAAATGTCTATTAAATAAGAGCACAGGGCCTTTGGTTGCATCTGTATGTAATGAAAGCCGAGGTATAAAATGTAGGATCTCTGCATGGGCTTTGGTTGTATCTGTATGTAATGAAAGCAGAGGTATAAAATGTAGGATCTCTGCAT

Ace file of the UniGene sp_v2.0_unigene175 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Ginkgo biloba RepID=E6Y0T2_GINBI	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	43%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	78%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 748 - 1316

Fln protein: QKQRIAISRAIVKNPAILLLDEATSALDSESEKSVQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGSALSRQKSAVVSRGGGGSISQRGGGGSISRTFSFAASDKESSLGAFSRPFGSETNEIAKTERVPFSRLVKMAAPDWMRAVLGMSGAIFAGGQIPLFALGVTQGMVALYSADYGYTKSEIRKICLLFCTAAVLTVFAHVVEHVNFATMGERLTLRVREMMFAAILRNEVGWFDDNSNNSGLVSSRLASDATLVRGLVVDRGSILLQNLSLIVTAVIIAFIEQWRITLVILATYPFLVISQMCERFFMTGYGGNLSKAYLKANMMATEGVSNIRTVAAFCAEEKLIDMFSRELEEPRKKSFIRGQIAGFFYGISQFSMFSSYGLALWYASTLIKNYEASFGSVMKTFMVLIVTALGMAETLAVCPDLIKGTDAVSSVFEIVDRKTEIPPDDPNGEVLTHVQGVIQLKHVDFSYPARPDVKIFEDFNLVVKSGRSVALVGSSGSGKSSILALILRFYDPTAGKVMVDGIDIKKLKVRSLRKHIGLVQQEPALFATTIFDNIIYGRDGATEAEVIEAAKLANAHNFISSLPDGYRTEVGERGVQLSGGQKQRVAIARAVLKDPAILLLDEATSALDAESENVVQQALNQLMKNRTTVMVAHRLSTVQNADVIAVLQDGKIVEQGSHSSLLNKDGAYSKLVSLQQHQ*

Protein Length: 749

Fln nts: ACAGAAACAGCGAATAGCAATCTCTAGAGCTATAGTTAAAAATCCAGCGATACTTCTCCTGGACGAGGCCACCAGTGCCTTGGATTCAGAATCTGAAAAAAGTGTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTTGGGATGTCGGGAGCAATATTTGCAGGAGGGCAAATACCCTTGTTTGCCCTGGGAGTCACTCAAGGCATGGTGGCCCTTTACAGTGCGGATTACGGTTACACCAAAAGTGAAATACGCAAAATCTGCTTGCTTTTTTGCACCGCTGCTGTGCTCACAGTCTTTGCACATGTGGTGGAACATGTCAACTTCGCAACAATGGGTGAACGTCTTACATTACGTGTGAGGGAGATGATGTTCGCAGCAATCCTGCGAAATGAAGTGGGGTGGTTTGATGATAACAGCAACAACAGTGGCCTGGTGTCTTCTCGGTTGGCGTCGGACGCAACATTAGTGAGAGGTTTGGTGGTAGACCGTGGGTCCATTCTACTGCAAAACTTGTCGCTCATTGTGACTGCAGTTATAATTGCATTCATCGAGCAATGGCGTATCACCCTGGTTATATTGGCCACTTACCCCTTCCTCGTCATTTCCCAGATGTGTGAGAGGTTCTTCATGACAGGATATGGGGGAAACCTGAGCAAAGCTTATCTAAAAGCCAATATGATGGCCACCGAAGGGGTGAGCAATATCAGAACAGTGGCGGCCTTTTGTGCTGAAGAGAAACTCATCGACATGTTCAGCAGAGAATTAGAGGAGCCACGAAAAAAATCTTTTATTCGTGGGCAAATAGCAGGATTCTTCTACGGAATTTCACAGTTCTCCATGTTCAGCTCCTATGGTTTGGCCCTGTGGTATGCCTCCACTCTCATCAAGAACTACGAAGCATCATTTGGGTCCGTGATGAAAACGTTCATGGTTCTCATAGTCACAGCCCTGGGCATGGCAGAGACCCTTGCAGTCTGCCCTGATTTAATCAAGGGCACAGATGCTGTGAGCTCTGTATTTGAAATTGTGGACAGGAAAACAGAAATTCCTCCAGACGACCCAAATGGCGAAGTTCTGACCCATGTACAAGGGGTGATCCAGTTGAAACATGTAGATTTCAGCTACCCTGCAAGGCCGGATGTGAAAATTTTTGAGGACTTCAACCTTGTAGTAAAATCTGGTCGATCTGTGGCACTGGTTGGTTCCAGTGGCTCGGGAAAAAGTTCAATTCTTGCTCTGATATTGAGATTCTACGATCCAACTGCAGGCAAGGTGATGGTCGATGGCATAGATATCAAGAAATTGAAGGTGAGGTCATTGCGTAAACACATAGGTCTAGTTCAGCAGGAACCTGCTCTGTTCGCCACTACCATATTCGATAATATCATCTATGGAAGAGATGGAGCCACTGAAGCTGAGGTTATTGAAGCTGCTAAATTGGCCAATGCCCACAACTTTATCAGTAGCCTGCCAGATGGGTATCGGACCGAGGTGGGTGAGAGGGGAGTTCAGTTGTCAGGGGGGCAGAAACAGAGAGTTGCCATTGCTAGAGCAGTGCTCAAAGATCCTGCTATTCTACTTTTAGATGAGGCCACCAGTGCCCTTGATGCTGAATCTGAGAATGTTGTGCAACAGGCATTGAACCAGCTGATGAAGAACAGGACTACTGTTATGGTAGCCCATCGTCTGTCTACTGTTCAGAATGCTGATGTCATTGCTGTTTTGCAGGATGGTAAAATTGTTGAGCAAGGCTCTCATTCCAGTCTTCTCAACAAGGATGGTGCCTATTCAAAGCTTGTCAGTCTTCAACAACATCAATGA___CTTCTACACAGGGTTAGGCTTCCAGTCTATATTTCATCTTGGGTTCAGTATGGTGCCTATTCAGAGCTTGTCAGTCCTCAACAACATCAATGATTTCTACATAGGGTTAGCTTTCCAATCTAGTTTTCATCTTGGGTTTCATAAAACATAGTTGGATGGGTTAAGCTTGAATTTAACAGTGATACATATTGTGTAGATGTTCTCTATACTATGATCACGTGAAAAAAATATTGGTCAGATAATGTGAAAACAACTGATACTCTGTTGTCTTCGGTGATTGGAATAAAAACACACATTGGATTCTCTGTCTGGGTATTAAGCAGTAAACAGATTGTAAAGACATGGAATCTCTTGATGGGCCGCACAGCAATAAGGTTGCAGGATAGGAGACTTGGTAGATTGCCAGTAGAGAATTAAACATTGATTCATGAGGTGTCATGCACGAGTGGCCGTGCTTTTGTATTTCAATAAATATGCAGTTTATCACTTTCTGGATTGCTGGTTGCATTTGATAAAAAGCTGAAAGTGCAAATAGCTCTGAATGAAGCTTCGATTAGTCCATGGAAACGTTTACAGATATGTAAGCTGATCTGAAATATGTAGCTGTGAATGAAATGTGCAGAGGCTTTGCAGAAAGTTGTTACATTATACGAAGAATTTAACTCAATTTAGATGAAATGAATATTGATTTCAAATATTAGATATTTGTGAGATGGTTTAATATTTAAATATTTGGTTGAATGGACACATTCAATTGTTGGTTGTGAAATATCAAATGTCTATTAAATAAGAGCACAGGGCCTTTGGTTGCATCTGTATGTAATGAAAGCCGAGGTATAAAATGTAGGATCTCTGCATGGGCTTTGGTTGTATCTGTATGTAATGAAAGCAGAGGTATAAAATGTAGGATCTCTGCAT

Fln Alignment:

Contig175___QKQRIAISRAIVKNPAILLLDEATSALDSESEKSVQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGSA-----------------LSRQKSAVVXXXXXXXXXXXXXXXXXXRTFSFAASDKESSLGAFSRPFGSETNEIAK---------------------TERVPFSRLVKMAAPDWMRAVLGMSGAIFAGGQIPLFALGVTQGMVALYSADYGYTKSEIRKICLLFCTAAVLTVFAHVVEHVNFATMGERLTLRVREMMFAAILRNEVGWFDDNSNNSGLVSSRLASDATLVRGLVVDRGSILLQNLSLIVTAVIIAFIEQWRITLVILATYPFLVISQMCERFFMTGYGGNLSKAYLKANMMATEGVSNIRTVAAFCAEEKLIDMFSRELEEPRKKSFIRGQIAGFFYGISQFSMFSSYGLALWYASTLIKNYEASFGSVMKTFMVLIVTALGMAETLAVCPDLIKGTDAVSSVFEIVDRKTEIPPDDPNGEVLTHVQGVIQLKHVDFSYPARPDVKIFEDFNLVVKSGRSVALVGSSGSGKSSILALILRFYDPTAGKVMVDGIDIKKLKVRSLRKHIGLVQQEPALFATTIFDNIIYGRDGA-TEAEVIEAAKLANAHNFISSLPDGYRTEVGERGVQLSGGQKQRVAIARAVLKDPAILLLDEATSALDAESENVVQQALNQLMKNRTTVMVAHRLSTVQNADVIAVLQDGKIVEQGSHSSLLNK-DGAYS
E6Y0T0_____________QKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDSKDPDELEIHQDDSKVLGRVSSQRSSFRRSISSGSSGIGGSRRSYSFSYAFPGTVGLQETGGMEEISQSKGNKRRKGLMSYFRSNTQKDVEGGQSDAEKDVSILRLASLNKPEIPVFILGSIAAAMNGMIFPVFGLLLSSVIKVFYEPPHELRK-DAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNENSSGAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRVKVNRSTIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKKRNGAYA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1849	16		83		0.994512
2050		20		80	0.995493
2051		20		80	0.995493
2052	20	80			0.995493
2053			80	20	0.995493
2309	88			11	0.923564
2450		16	83		0.994512
2451		16		83	0.994512
2452		16	83		0.994512
2454			83	16	0.994512
2572		16		83	0.994512
3051	10	90			0.90298
3052		10		90	0.90298
3054		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain