SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene140

Length: 1308 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene140

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RC60_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	atp-dependent rna helicase	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	70%
Blast2go	plasmodesmata-mediated intercellular transport	GO:0010497	Biological Process	70%
Blast2go	plasmodesma organization	GO:0009663	Biological Process	70%
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRR8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 281 - 413

Fln protein: *GFREHMHRILEHVGKQKSAQDRQIQNKDEGNSRSSLSKTNERVERQIIMVSATMPPAVLRAANTWGHKPLLVRANSVVDIGSVHNMEAAVSDVSNSTIQGAIESLPPMLEHFYAVSQQQHKVDTFRKCIHALDAKSVIVFMNHNTQLKDTVFKLEARGLSAGALHGDLSKLERTNRLANFRKGELRILVTNELAARGLDIMNCDLVANLDLPTDSIHYAHRAGRTGRLGQKGTVVSICEQQEEFVLKKFQKQLGISISCCDFVGGQLTICKKPDEKIKN*

Protein Length: 282

Fln nts: TGAGGCTTCAGAGAGCACATGCACAGGATTTTGGAACATGTTGGGAAACAAAAATCTGCACAGGATCGACAAATTCAAAACAAAGATGAAGGTAACTCAAGGTCATCCCTGTCTAAAACTAACGAAAGAGTCGAGAGGCAGATTATTATGGTGTCTGCCACCATGCCACCAGCAGTCTTAAGAGCAGCAAATACCTGGGGTCATAAGCCATTACTTGTGAGGGCTAACAGTGTTGTTGATATTGGTTCAGTTCATAATATGGAAGCTGCAGTATCAGATGTTTCCAATTCAACCATTCAGGGTGCTATCGAAAGCTTGCCTCCAATGCTGGAACATTTCTATGCTGTTTCTCAACAACAGCACAAGGTAGACACTTTCAGAAAATGCATTCATGCTTTAGATGCAAAGTCAGTTATAGTCTTTATGAACCATAATACACAGCTTAAGGACACTGTCTTCAAGCTGGAGGCACGGGGGCTTTCAGCGGGTGCTTTACATGGGGACCTGAGCAAGCTAGAAAGGACCAACAGACTTGCAAATTTTAGGAAAGGGGAGCTCAGGATTTTAGTGACAAATGAGTTGGCAGCAAGGGGACTGGATATTATGAACTGTGATCTTGTCGCGAATCTGGACTTACCAACAGATTCAATTCATTATGCTCATAGGGCTGGCCGGACAGGCCGCCTTGGTCAAAAAGGTACAGTTGTTTCTATTTGCGAACAACAAGAGGAATTTGTTCTTAAAAAGTTTCAGAAGCAACTTGGCATTTCCATTAGTTGCTGTGATTTTGTTGGGGGCCAACTTACTATCTGCAAGAAACCTGACGAGAAAATTAAAAATTAA___GTACCTTTACAAATGATGGTGGAAGACTTTATAATTGGACTCAAAAATCAAGGGTTCACGTGGCATGGTAGTCAGCTTCTTACATTCATCTTGCTTTCTCAGGGGTATGTGAAACTACTGCATGTAGTAATGTTCTTATTTTCTTTGGAGCATGTACATGTGCTAAATGTGTGTGTTACAACATAAACCATCTTTTGACCCCTGTTTGTGGTTGATCGGTCAGTGTCAATTTTTGTTGCATTTAGAAAAGAAATAGAGGATCTCTTAGGAAGTGCAGATGGATTGCACTCGATTCCTGCATGAATTATGTGCAAAGAGCTGCTTGGGTAATTTTGATTATAAAAGAACACTATTTCAGCTGGAGGGTGTTCTTTCACTCTGCCAAAGAAAGTTTTAAAGTAATTTTCTATTTTAATGATTTCTTTATATATAAGGGTAACAGAGGCATGCCACATATCATATTCC

Fln Alignment:

Contig140___QIIMVSATMPPAVLRAANTWGHKP--LLVRANSVVDIGSVHNMEAAVSDVSNSTIQGAIESLPPMLEHFYA-VSQQQHKVDTFRKCIHALDAKSVIVFMNHNTQLKDTVFKLEARGLSAGALHGDLSKLERTNRLANFRKGELRILVTNELAARGLDIMNCDLVANLDLPTDSIHYAHRAGRTGRLGQKGTVVSICEQQEEFVLKKFQK
B8LRR8_____________QVGVFSATMPPEALEITRKFMSKPVRILVKRDEL-------------------TLEG--------IKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
850		11		88	0.923564
983		10		90	0.90298
987		10		90	0.90298
990	11		88		0.923564
991		11	77		0.968132
993			77	11	0.968132
994		88		11	0.923564
997			87	12	0.992554
1097		10		90	0.90298
1236		20		80	0.995493
1238	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain